Rroxscaffold_1G00031640

Transposase-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000178
Physical Location & Seq
Forward (+)
44848181 .. 44849653
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031640.1

Sequence Viewer

Length: 429 bp
ATGTCGATTGATAAATCTTGGATGCAATTAAGTAGATCAGACCCAAAGTATGATCAAGGAGTTATAGAGTTTCTTGATTTTGCATATAGCCATGATAAGTGGGTAGAGGATGACATGATAATGTGTCCATGCAAAGTATGTGGTTTAAATAGAGACAGACTTGTGCGGTCTGAATTCCTAGCTTGTTCCGGCATAGATCGCATGTTGGTGTGGTGGGCATCCCTGTCACCTCCCAAGCAATCCAGGAGCTCGATCAGCGGTGTGAAGTATGACCGGGAAAGCACGGCCATGCTCAAGCTCCTCCTTCACCTTCTTCCACCATCTCAAACCTCCCTTCCTTCCTTCTCTTCGGCTTCGTCTCCGCAACACCAAAACGCTACGCTTCACAAACAATGCTCCTCCAATAGCTCTCCACGCCGGAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

8.31

Isoelectric Point (pI)

71.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 5 - 50 1.4e-09 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 166, 258, 362
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 173
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 4 cut(s) 182, 249, 298, 408
AluI AGCT 4 cut(s) 182, 249, 298, 408
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 147, 363
AoxI GGCC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 219, 299
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BccI CCATC 1 cut(s) 328
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 1 cut(s) 52
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 147, 363
BfaI CTAG 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 244, 275
BmrFI CCNGG 2 cut(s) 244, 275
BmsI GCATC 2 cut(s) 12, 227
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 3 cut(s) 27, 115, 218
BseRI GAGGAG 2 cut(s) 290, 388
BshFI GGCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 3 cut(s) 189, 274, 418
BsmAI GTCTC 2 cut(s) 147, 363
BsmBI CGTCTC 1 cut(s) 363
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 4 cut(s) 35, 52, 196, 252
BspACI CCGC 3 cut(s) 166, 258, 362
BspANI GGCC 1 cut(s) 287
BssMI GATC 4 cut(s) 35, 52, 196, 252
Bst2UI CCWGG 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 352
BstF5I GGATG 3 cut(s) 27, 115, 218
BstKTI GATC 4 cut(s) 38, 55, 199, 255
BstMAI GTCTC 2 cut(s) 147, 363
BstMBI GATC 4 cut(s) 35, 52, 196, 252
BstMWI GCNNNNNNNGC 3 cut(s) 198, 255, 414
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 242, 273
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 27, 115, 218
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 5 cut(s) 92, 115, 129, 202, 289
CviJI RGCY 7 cut(s) 90, 182, 249, 287, 298, 353, 408
CviKI_1 RGCY 7 cut(s) 90, 182, 249, 287, 298, 353, 408
DpnI GATC 4 cut(s) 37, 54, 198, 254
DpnII GATC 4 cut(s) 35, 52, 196, 252
DraI TTTAAA 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 5 cut(s) 95, 118, 132, 205, 292
FatI CATG 5 cut(s) 91, 114, 128, 201, 288
FbaI TGATCA 1 cut(s) 52
FokI GGATG 3 cut(s) 34, 122, 205
FriOI GRGCYC 1 cut(s) 251
FspBI CTAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 189, 274, 418
Hin1II CATG 5 cut(s) 95, 118, 132, 205, 292
HpaII CCGG 3 cut(s) 189, 274, 418
HphI GGTGA 2 cut(s) 219, 299
Hpy188I TCNGA 2 cut(s) 40, 172
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 5 cut(s) 314, 320, 344, 348, 352
HpyCH4V TGCA 3 cut(s) 25, 83, 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 255, 414
Hsp92II CATG 5 cut(s) 95, 118, 132, 205, 292
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 4 cut(s) 35, 52, 196, 252
LmnI GCTCC 3 cut(s) 246, 303, 401
LpnPI CCDG 5 cut(s) 202, 229, 236, 256, 287
LweI GCATC 2 cut(s) 12, 227
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 225
MalI GATC 4 cut(s) 37, 54, 198, 254
MboI GATC 4 cut(s) 35, 52, 196, 252
MboII GAAGA 2 cut(s) 305, 339
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 26, 173
MnlI CCTC 5 cut(s) 100, 240, 311, 340, 409
MseI TTAA 2 cut(s) 29, 146
MslI CAYNNNNRTG 3 cut(s) 119, 206, 287
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 3 cut(s) 189, 274, 418
MspR9I CCNGG 2 cut(s) 244, 275
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 198, 255, 414
NciI CCSGG 1 cut(s) 275
NdeII GATC 4 cut(s) 35, 52, 196, 252
NlaIII CATG 5 cut(s) 95, 118, 132, 205, 292
NmuCI GTSAC 1 cut(s) 225
NspI RCATGY 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
RseI CAYNNNNRTG 3 cut(s) 119, 206, 287
SacI GAGCTC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 29, 146
Sau3AI GATC 4 cut(s) 35, 52, 196, 252
ScrFI CCNGG 2 cut(s) 244, 275
SduI GDGCHC 1 cut(s) 251
SetI ASST 7 cut(s) 184, 232, 251, 300, 312, 332, 410
SfaNI GCATC 2 cut(s) 12, 227
SmiMI CAYNNNNRTG 3 cut(s) 119, 206, 287
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 26, 173
SsiI CCGC 3 cut(s) 166, 258, 362
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 242, 273
TaqI TCGA 2 cut(s) 5, 251
TasI AATT 2 cut(s) 26, 173
Tru1I TTAA 2 cut(s) 29, 146
Tru9I TTAA 2 cut(s) 29, 146
TseFI GTSAC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 225
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 205
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.