Rh6DG207400

Domain of unknown function (DUF4216)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
36846963 .. 36850316
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG207400.1

Sequence Viewer

Length: 657 bp
ATGGCTAAGGGTTACACTAAGTGGACAGATCATGGAGAAAATGATGATGATTTTGAACTAGAAGATGATATTTTGGAATCTGAAAATGAAGAGGATGTTGATGATGTAGTTGAAATGTTAAATGATTTCCAAGCTCATGATGATAGGGAATCTCAAGAACATGGAGCAGTTGATGATGTTCTCAGCCTAACTGACTTTACAAGGATTCGATGGGAACATAAAGCAGAACTTGAGAGGCAAAATATTCCAAACATAGAAAAAGAACAACAACAGAAGTTTCATAAATGGTTTTTGCGACGTGTTCAACAGATGCAAGTTGAGGGTTCAACAGAAGATGTTGAATCCTTACTATACTTAGCCAGTGGACCTCAACGTGAAGTGGCACGATATAGTGGGTGTATCGTCAATGGCATAAGGTTTCATACTCAGAAAAGCGATGCAAATAAAAAAACTCAAAACTATGGAGTGGTAGTCAAAAGAGAGCATCGTGGTAAAAGTATCGACTTTTATGGTGTTTTGAAAGATATAATTGTGTTATCATACCTTGGAAATAATCAGGTGGTCGTTTTCAAATGTGATTGGCTGGATCTCAATGCAAGAAGGGGAATTCAAGTTGATGAGAACCAGTTTACAAGTGTTAATTTTACCAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

25.5

Weight (kDa)

4.88

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 179 - 218 6.8e-09 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 594
AcsI RAATTY 1 cut(s) 606
AdeI CACNNNGTG 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 8 cut(s) 56, 113, 305, 327, 341, 520, 571, 611
AjiI CACGTC 1 cut(s) 299
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 1 cut(s) 594
ApoI RAATTY 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 365
BccI CCATC 1 cut(s) 204
BfaI CTAG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 365
BmsI GCATC 3 cut(s) 300, 427, 493
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 2 cut(s) 138, 251
BsaJI CCNNGG 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bse1I ACTGG 2 cut(s) 360, 625
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 196, 440
BseNI ACTGG 2 cut(s) 360, 625
Bsp143I GATC 2 cut(s) 28, 586
BspCNI CTCAG 2 cut(s) 195, 439
BspHI TCATGA 1 cut(s) 136
BspPI GGATC 1 cut(s) 594
BsrI ACTGG 2 cut(s) 360, 625
BssECI CCNNGG 1 cut(s) 544
BssMI GATC 2 cut(s) 28, 586
BssT1I CCWWGG 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 84
BstDEI CTNAG 5 cut(s) 6, 18, 182, 355, 426
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 31, 589
BstMBI GATC 2 cut(s) 28, 586
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 367
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 3 cut(s) 32, 137, 161
CviJI RGCY 5 cut(s) 5, 134, 186, 359, 583
CviKI_1 RGCY 5 cut(s) 5, 134, 186, 359, 583
DdeI CTNAG 5 cut(s) 6, 18, 182, 355, 426
DpnI GATC 2 cut(s) 30, 588
DpnII GATC 2 cut(s) 28, 586
DraIII CACNNNGTG 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 3 cut(s) 35, 140, 164
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 3 cut(s) 31, 136, 160
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 59
Hin1II CATG 3 cut(s) 35, 140, 164
HinfI GANTC 4 cut(s) 77, 149, 205, 341
Hpy166II GTNNAC 3 cut(s) 24, 365, 630
Hpy188I TCNGA 2 cut(s) 82, 429
Hpy188III TCNNGA 2 cut(s) 137, 155
Hpy8I GTNNAC 3 cut(s) 24, 365, 630
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 594
HpyCH4IV ACGT 2 cut(s) 298, 373
HpyCH4V TGCA 3 cut(s) 313, 440, 596
HpyF3I CTNAG 5 cut(s) 6, 18, 182, 355, 426
HpySE526I ACGT 2 cut(s) 298, 373
Hsp92II CATG 3 cut(s) 35, 140, 164
Kzo9I GATC 2 cut(s) 28, 586
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 4 cut(s) 373, 542, 569, 638
LweI GCATC 3 cut(s) 300, 427, 493
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 298, 373
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 30, 588
MboI GATC 2 cut(s) 28, 586
MboII GAAGA 3 cut(s) 74, 101, 344
MflI RGATCY 1 cut(s) 586
MluCI AATT 3 cut(s) 528, 606, 640
MnlI CCTC 4 cut(s) 85, 228, 313, 378
MseI TTAA 2 cut(s) 119, 639
NdeII GATC 2 cut(s) 28, 586
NlaIII CATG 3 cut(s) 35, 140, 164
PagI TCATGA 1 cut(s) 136
PfeI GAWTC 4 cut(s) 77, 149, 205, 341
PspPI GGNCC 1 cut(s) 365
PsuI RGATCY 1 cut(s) 586
SaqAI TTAA 2 cut(s) 119, 639
Sau3AI GATC 2 cut(s) 28, 586
Sau96I GGNCC 1 cut(s) 365
SetI ASST 7 cut(s) 136, 301, 370, 376, 419, 546, 561
SfaNI GCATC 3 cut(s) 300, 427, 493
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 153, 230
SmoI CTYRAG 2 cut(s) 153, 230
Sse9I AATT 3 cut(s) 528, 606, 640
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 544
TaiI ACGT 2 cut(s) 301, 376
TaqI TCGA 2 cut(s) 208, 501
TasI AATT 3 cut(s) 528, 606, 640
TfiI GAWTC 4 cut(s) 77, 149, 205, 341
Tru1I TTAA 2 cut(s) 119, 639
Tru9I TTAA 2 cut(s) 119, 639
TscAI CASTG 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 102, 269, 410
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 606
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.