Rh5AG128300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000178
Physical Location & Seq
Forward (+)
12498547 .. 12507744
9198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG128300.1

Sequence Viewer

Length: 654 bp
ATGGCCAACAATGATCTGGAGTTCAGGAGAAACACAACAAAACCTCTAGGCCAAGTTGAAGATCATTTATATTCATATGGAATGGTTATGCATTACATTAAGTGGACAAAACATGGGGAAGAAGAGTCTGATGATGAATTGGAAAATGATGACATAATAGAAGAGGATATTGGAGAGGATGTTGAGGAAGATGTTGATGCTGTAGTTGAAATGATACATGAATATCAGGCTGGTGCTTTTGCTAGTGACGGGGTATCTCAAGAGCATTCTCATAATAGAGAAGAAAATAGACATTATGTGGAAGCACTTTCAAGCCCATTACGGTTATCTCCTAGAAAGCATTCAAAGACACAGCCTTCCACAAATCGATCAATACATCCTCGTCGACCTGCTATCCAGTCATCAAGAACTCCATCTCCTCCTTCCCCATATGTTATGAGATCATCTCCGCTTTCCCCTTCACCTCCACATATGCGCACAGTCTTATCAACCTCTAATCAGCACACATCAACTCCAAGTGCACACGAAGAGATAGCTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGTAGAGAACATTGGTGCTTATGAAGTGCCCAAAACTTGTCATAGTCTGGAAGAAACGATTTGTGAAGAGTGGTCCAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.55

Weight (kDa)

5.05

Isoelectric Point (pI)

77.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 385
AciI CCGC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 4 cut(s) 59, 209, 312, 345
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 1 cut(s) 536
AluI AGCT 1 cut(s) 536
Alw21I GWGCWC 1 cut(s) 523
Alw44I GTGCAC 1 cut(s) 519
AoxI GGCC 2 cut(s) 3, 49
ApaLI GTGCAC 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 642
BaeGI GKGCMC 2 cut(s) 523, 600
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 1 cut(s) 421
BfaI CTAG 3 cut(s) 47, 243, 333
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 642
BmsI GCATC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 243, 531
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 645
BsaXI ACNNNNNCTCC 6 cut(s) 165, 195, 400, 430, 496, 526
Bse1I ACTGG 1 cut(s) 397
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 3 cut(s) 184, 376, 556
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 2 cut(s) 523, 600
BshFI GGCC 2 cut(s) 5, 51
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 523
BsmI GAATGC 2 cut(s) 265, 340
BsnI GGCC 2 cut(s) 5, 51
Bsp1286I GDGCHC 2 cut(s) 523, 600
Bsp143I GATC 4 cut(s) 13, 61, 368, 440
BspACI CCGC 1 cut(s) 449
BspANI GGCC 2 cut(s) 5, 51
BspDI ATCGAT 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 4 cut(s) 13, 61, 368, 440
BssT1I CCWWGG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 324, 481
Bst6I CTCTTC 4 cut(s) 117, 156, 522, 630
BstDEI CTNAG 1 cut(s) 568
BstF5I GGATG 3 cut(s) 184, 376, 556
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 4 cut(s) 16, 64, 371, 443
BstMBI GATC 4 cut(s) 13, 61, 368, 440
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 2 cut(s) 523, 600
Bsu15I ATCGAT 1 cut(s) 367
BsuRI GGCC 2 cut(s) 5, 51
BsuTUI ATCGAT 1 cut(s) 367
BtsCI GGATG 3 cut(s) 184, 376, 556
BveI ACCTGC 1 cut(s) 397
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 642
ClaI ATCGAT 1 cut(s) 367
CviAII CATG 2 cut(s) 113, 218
CviJI RGCY 6 cut(s) 5, 51, 230, 315, 355, 536
CviKI_1 RGCY 6 cut(s) 5, 51, 230, 315, 355, 536
DdeI CTNAG 1 cut(s) 568
DpnI GATC 4 cut(s) 15, 63, 370, 442
DpnII GATC 4 cut(s) 13, 61, 368, 440
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 117, 156, 522, 630
EarI CTCTTC 4 cut(s) 117, 156, 522, 630
Eco130I CCWWGG 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 642
EcoT14I CCWWGG 1 cut(s) 645
EcoT22I ATGCAT 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 2 cut(s) 116, 221
FatI CATG 2 cut(s) 112, 217
FauNDI CATATG 3 cut(s) 76, 430, 471
FblI GTMKAC 1 cut(s) 385
FokI GGATG 3 cut(s) 191, 363, 543
FspAI RTGCGCAY 1 cut(s) 476
FspBI CTAG 3 cut(s) 47, 243, 333
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 1 cut(s) 476
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 5, 51
HhaI GCGC 1 cut(s) 477
Hin1II CATG 2 cut(s) 116, 221
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HinfI GANTC 2 cut(s) 125, 539
HphI GGTGA 1 cut(s) 453
Hpy166II GTNNAC 3 cut(s) 105, 386, 521
Hpy188I TCNGA 2 cut(s) 130, 653
Hpy188III TCNNGA 5 cut(s) 17, 25, 260, 405, 617
Hpy8I GTNNAC 3 cut(s) 105, 386, 521
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 3 cut(s) 366, 432, 468
HpyCH4III ACNGT 2 cut(s) 324, 481
HpyCH4V TGCA 2 cut(s) 91, 521
HpyF3I CTNAG 1 cut(s) 568
Hsp92II CATG 2 cut(s) 116, 221
HspAI GCGC 1 cut(s) 475
Kzo9I GATC 4 cut(s) 13, 61, 368, 440
LpnPI CCDG 7 cut(s) 2, 10, 212, 216, 402, 410, 602
LweI GCATC 1 cut(s) 187
MaeI CTAG 3 cut(s) 47, 243, 333
MaeIII GTNAC 1 cut(s) 245
MalI GATC 4 cut(s) 15, 63, 370, 442
MboI GATC 4 cut(s) 13, 61, 368, 440
MhlI GDGCHC 2 cut(s) 523, 600
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 9 cut(s) 54, 157, 169, 178, 390, 429, 474, 502, 570
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 340
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 2 cut(s) 265, 340
NdeI CATATG 3 cut(s) 76, 430, 471
NdeII GATC 4 cut(s) 13, 61, 368, 440
NlaIII CATG 2 cut(s) 116, 221
NmuCI GTSAC 1 cut(s) 245
NsbI TGCGCA 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 93
PctI GAATGC 2 cut(s) 265, 340
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 539
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 642
SalI GTCGAC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 4 cut(s) 13, 61, 368, 440
Sau96I GGNCC 1 cut(s) 642
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 2 cut(s) 523, 600
SetI ASST 7 cut(s) 46, 391, 466, 494, 538, 569, 651
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 642
SmlI CTYRAG 2 cut(s) 258, 546
SmoI CTYRAG 2 cut(s) 258, 546
Sse9I AATT 1 cut(s) 137
SsiI CCGC 1 cut(s) 449
SspMI CTAG 3 cut(s) 47, 243, 333
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 324, 481
TaqI TCGA 2 cut(s) 367, 385
TasI AATT 1 cut(s) 137
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 63, 150, 234, 606
VneI GTGCAC 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 642
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 3 cut(s) 47, 243, 333
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.