Rroxscaffold_7G00199620

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000178
Physical Location & Seq
Forward (+)
46507354 .. 46508935
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199620.1

Sequence Viewer

Length: 453 bp
ATGCGCACAGCCTTATCAACCTCTAATCAGCACACATCAACTCCAAGTGCACATGAAGAGATAGCTGAATCTTCTCATGTTGCTCATCCTCCTACCTTAGAAGAGAACATTGATGCCGCCCGTAAGAAACGACGTGGTGAGACTCGAGGTCTTGGGATAGCCAAGAAGAAACGACCTAGTAATCAAATAGAGATTGATATTCCGAGCATGGATGATGTTGCTACGATGGTTCGTCTTGTCCGTGAGAAATTCAAATTGGGGAATGAACCACACGTGAATGAGGCTGTTGAGGTAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTGCATAAAACGTTTTTGCAATATGAATCAATGGAGGAGGCACTTGAGAACAGACCTGAAAATGTGGGAGAAGATGACTGGGATTTCTCATCAATTGGTGGCACGATGACGAGTGGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

150

Amino Acids

17.14

Weight (kDa)

5.88

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 117
AclI AACGTT 1 cut(s) 341
AcsI RAATTY 1 cut(s) 248
AcvI CACGTG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 147
AjiI CACGTC 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 134
Alw44I GTGCAC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmeRI GACNNNNNGTC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 144
BmgBI CACGTC 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bse1I ACTGG 1 cut(s) 413
BseGI GGATG 2 cut(s) 85, 217
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 52
BspACI CCGC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 51, 96
BstBAI YACGTR 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 85, 217
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 52
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 85, 217
CfoI GCGC 1 cut(s) 6
CviAII CATG 4 cut(s) 53, 77, 208, 298
CviJI RGCY 5 cut(s) 11, 65, 161, 284, 447
CviKI_1 RGCY 5 cut(s) 11, 65, 161, 284, 447
DdeI CTNAG 1 cut(s) 97
DriI GACNNNNNGTC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 51, 96
Eam1105I GACNNNNNGTC 1 cut(s) 147
EarI CTCTTC 2 cut(s) 51, 96
Eco72I CACGTG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 144
FaeI CATG 4 cut(s) 56, 80, 211, 301
FaiI YATR 7 cut(s) 54, 78, 209, 299, 312, 336, 354
FatI CATG 4 cut(s) 52, 76, 207, 297
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 72, 224
Fsp4HI GCNGC 1 cut(s) 117
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 177
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 56, 80, 211, 301
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 3 cut(s) 68, 142, 356
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 50, 295
Hpy188I TCNGA 1 cut(s) 204
Hpy8I GTNNAC 2 cut(s) 50, 295
Hpy99I CGWCG 1 cut(s) 135
HpyCH4IV ACGT 3 cut(s) 133, 273, 341
HpyCH4V TGCA 3 cut(s) 50, 334, 349
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 3 cut(s) 133, 273, 341
Hsp92II CATG 4 cut(s) 56, 80, 211, 301
HspAI GCGC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 394, 399, 433
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 177
MaeII ACGT 3 cut(s) 133, 273, 341
MboII GAAGA 6 cut(s) 63, 68, 113, 178, 318, 413
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 4 cut(s) 248, 254, 328, 423
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 7 cut(s) 31, 99, 140, 274, 283, 358, 361
MslI CAYNNNNRTG 1 cut(s) 276
MunI CAATTG 1 cut(s) 423
NlaIII CATG 4 cut(s) 56, 80, 211, 301
NsbI TGCGCA 1 cut(s) 5
PaeR7I CTCGAG 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PfeI GAWTC 2 cut(s) 68, 356
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 136
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 341
PspCI CACGTG 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 1 cut(s) 117
SchI GAGTC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 1 cut(s) 103
Sfr274I CTCGAG 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 144, 374
SmoI CTYRAG 2 cut(s) 144, 374
Sse9I AATT 4 cut(s) 248, 254, 328, 423
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 177
TaiI ACGT 3 cut(s) 136, 276, 344
TaqI TCGA 1 cut(s) 145
TasI AATT 4 cut(s) 248, 254, 328, 423
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 68, 356
TspDTI ATGAA 4 cut(s) 69, 279, 314, 369
TspGWI ACGGA 1 cut(s) 230
VneI GTGCAC 1 cut(s) 48
XapI RAATTY 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.