Rh5DG138400

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000178
Physical Location & Seq
Forward (+)
13936018 .. 13936638
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG138400.1

Sequence Viewer

Length: 621 bp
ATGGACCGAAGTTGGATGTACTTGAAACATAGATTTCAACCAGAATTTACCAATGGTCTCAAATTATTTATGGATGCTGCAAAAGAACACCTGAACAGAGAAAATAAGACATGTTGCCCTTGTCGTGATTGTAAAAATGGAGAACTTTTTACATTAACAGAGATACGTAGACATATACTGTCGAAGGGGTTTCAATTGTATTATTCTGTATGGACTGAGCATGGGGAAGATATTAATGATGTAGCAAATAGCCAAATAGATGATGAATTTGTCTTTGATGGTGAGGATGATGGTGAGGATGACGACAATGCTTCAATGATGGACATGTTAAATGATGTTCAAGGGCCTTTACATATGGAGATAGATGATGAGACAAGTAATCGTGGTGACAGTACACATGCTAGCAAATATGATTATTTGTTTGGCGAGGCTCAAAGAGAACTGTACCCGGGTTGTACAAAGTTCTCAGCATTAAGTTTTATTTTAAAGCTAATGCATATAAAGGTACTTGGTCGTTGGAGCAATAAAAGTTTCAACGCTTTGTTGAAAACGCTAAAAGATTCTCACCCAAATGGAGCAGCTATCCCATCATCGCATTATGAAGCCAAAAAAATGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

206

Amino Acids

23.77

Weight (kDa)

5.23

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 4.3e-22 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 44, 266
AfaI GTAC 5 cut(s) 20, 394, 446, 457, 507
AflIII ACRYGT 2 cut(s) 110, 324
AgsI TTSAA 7 cut(s) 25, 38, 194, 315, 341, 535, 547
AluBI AGCT 2 cut(s) 490, 581
AluI AGCT 2 cut(s) 490, 581
Alw26I GTCTC 2 cut(s) 62, 365
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 77, 578
ApoI RAATTY 2 cut(s) 44, 266
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 4, 344
AsuC2I CCSGG 2 cut(s) 449, 450
AsuHPI GGTGA 4 cut(s) 293, 305, 398, 557
AsuNHI GCTAGC 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 64, 590
BccI CCATC 4 cut(s) 272, 284, 313, 595
BcnI CCSGG 2 cut(s) 449, 450
BcoDI GTCTC 2 cut(s) 62, 365
BfaI CTAG 1 cut(s) 402
BisI GCNGC 2 cut(s) 78, 579
BlsI GCNGC 2 cut(s) 79, 580
Bme1390I CCNGG 2 cut(s) 449, 450
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 4, 344
BmrFI CCNGG 2 cut(s) 449, 450
BmsI GCATC 1 cut(s) 64
BmtI GCTAGC 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 449, 450
BsaAI YACGTR 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 448
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 4 cut(s) 21, 79, 292, 304
BseMII CTCAG 2 cut(s) 207, 480
BseXI GCAGC 2 cut(s) 64, 590
BshFI GGCC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 62, 365
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 448
Bsp1407I TGTACA 1 cut(s) 455
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 2 cut(s) 208, 479
BspOI GCTAGC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 180, 392, 444
BstAUI TGTACA 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 216, 466
BstF5I GGATG 4 cut(s) 21, 79, 292, 304
BstMAI GTCTC 2 cut(s) 62, 365
BstNSI RCATGY 3 cut(s) 114, 328, 401
BstSCI CCNGG 2 cut(s) 447, 448
BstSNI TACGTA 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 64, 590
BsuRI GGCC 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 576
BtsCI GGATG 4 cut(s) 21, 79, 292, 304
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 4, 344
Cfr9I CCCGGG 1 cut(s) 448
Csp6I GTAC 5 cut(s) 19, 393, 445, 456, 506
CviAII CATG 4 cut(s) 111, 221, 325, 398
CviJI RGCY 6 cut(s) 252, 346, 431, 490, 581, 605
CviKI_1 RGCY 6 cut(s) 252, 346, 431, 490, 581, 605
CviQI GTAC 5 cut(s) 19, 393, 445, 456, 506
DdeI CTNAG 2 cut(s) 216, 466
DraI TTTAAA 1 cut(s) 486
Eco105I TACGTA 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 498
FaeI CATG 4 cut(s) 114, 224, 328, 401
FatI CATG 4 cut(s) 110, 220, 324, 397
FauNDI CATATG 1 cut(s) 354
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 78, 579
FokI GGATG 4 cut(s) 28, 86, 299, 311
Fsp4HI GCNGC 2 cut(s) 78, 579
FspBI CTAG 1 cut(s) 402
GluI GCNGC 2 cut(s) 78, 579
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 449
Hin1II CATG 4 cut(s) 114, 224, 328, 401
HinfI GANTC 1 cut(s) 560
HpaII CCGG 1 cut(s) 449
HphI GGTGA 4 cut(s) 293, 305, 398, 557
Hpy166II GTNNAC 2 cut(s) 170, 395
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 170, 395
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 180, 392, 444
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 80, 496
HpyF3I CTNAG 2 cut(s) 216, 466
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 4 cut(s) 114, 224, 328, 401
LmnI GCTCC 2 cut(s) 519, 575
LpnPI CCDG 3 cut(s) 54, 104, 462
Lsp1109I GCAGC 2 cut(s) 64, 590
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 386
MboII GAAGA 1 cut(s) 239
MfeI CAATTG 1 cut(s) 194
MluCI AATT 4 cut(s) 44, 62, 194, 266
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 3 cut(s) 277, 289, 421
Mph1103I ATGCAT 1 cut(s) 498
MseI TTAA 5 cut(s) 155, 234, 329, 473, 485
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 449, 450
MunI CAATTG 1 cut(s) 194
NciI CCSGG 2 cut(s) 449, 450
NdeI CATATG 1 cut(s) 354
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 4 cut(s) 114, 224, 328, 401
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 3 cut(s) 114, 328, 401
PciI ACATGT 2 cut(s) 110, 324
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 2 cut(s) 79, 580
Ppu21I YACGTR 1 cut(s) 167
PscI ACATGT 2 cut(s) 110, 324
PshBI ATTAAT 1 cut(s) 234
PspPI GGNCC 2 cut(s) 4, 344
RsaI GTAC 5 cut(s) 20, 394, 446, 457, 507
RsaNI GTAC 5 cut(s) 19, 393, 445, 456, 506
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 5 cut(s) 155, 234, 329, 473, 485
SatI GCNGC 2 cut(s) 78, 579
Sau96I GGNCC 2 cut(s) 4, 344
ScrFI CCNGG 2 cut(s) 449, 450
SetI ASST 5 cut(s) 93, 169, 492, 507, 583
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 570
SnaBI TACGTA 1 cut(s) 167
Sse9I AATT 4 cut(s) 44, 62, 194, 266
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 447, 448
TaaI ACNGT 3 cut(s) 180, 392, 444
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 182
TaqII GACCGA 1 cut(s) 21
TasI AATT 4 cut(s) 44, 62, 194, 266
TatI WGTACW 3 cut(s) 18, 392, 455
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 5 cut(s) 155, 234, 329, 473, 485
Tru9I TTAA 5 cut(s) 155, 234, 329, 473, 485
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 77, 578
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 279, 615
TspMI CCCGGG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 2 cut(s) 44, 266
XceI RCATGY 3 cut(s) 114, 328, 401
XmaI CCCGGG 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 169
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.