FvH4_7g03653

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000178
Physical Location & Seq
Reverse (-)
4101302 .. 4102453
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03653.t1

Sequence Viewer

Length: 726 bp
ATGTGGTACTTGTTCTACAGGCAAGGAGAAGCGTTATGCTCTGAAGGGTCTCGTAAGGCTTCAAGGAGTGGTTTAGAAAGATTGAGAAGGCAGCTCCACATGTCCACCCTATTAAGAAGAGCGATTCTCACAATCAAAGAAGCTCCAACCAGTAATACAATGTCGGTTGATAAATCATGGATGATGCTCGGACTGTCTGATCTTAAGTATTTTGAAAGAGTCACAGATTTCATAGAATATGCTACTAGCCATGTAAAAGACAGCGATGGAATAATATATTGTTCATGTCGAGATTGTTTAAATGGAGATAGACTAGCACCAACAACATTACACCAACATCTTCTGTATAGAGTTTTTATGCCGGACTACACAGTATGGCGAAAACATGAGGAGAATGAAGACACTGATGATAGTGACGATACAGATAGTCGGAATCATAGTGAGGAAAGTGCGGCTCCCCACTTTGATCAGTGTGATGATATGCAAGAACTTATAGAAGAACTTATCCAACAAGATCCGAATGATAATGTGCAGAAGTTTTACAAGTTGTTGGATAAATCAAATGTGTCATTGTATCTCGGGTGCGAGAAATATTCCAACTTGTCCTTTGTTGTTAATTTGATGCACATCAAGAGTGATGGAAATATGAACAACAAAGGGTTTGTCCAGTTATTGGAATTGTTGGAAAATTCATTTCCCATGCGTGAAAAATTGCTGACAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

242

Amino Acids

28.13

Weight (kDa)

5.2

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 58 - 131 2.3e-14 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 673
AciI CCGC 1 cut(s) 452
AclWI GGATC 1 cut(s) 509
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 673
AflII CTTAAG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 63, 215
AluBI AGCT 2 cut(s) 94, 143
AluI AGCT 2 cut(s) 94, 143
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 578
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 688
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
AvaI CYCGRG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 260, 632
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 246, 314
BfmI CTRYAG 1 cut(s) 16
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 92, 453
BlsI GCNGC 2 cut(s) 93, 454
BmeT110I CYCGRG 1 cut(s) 578
BmiI GGNNCC 1 cut(s) 456
BmsI GCATC 2 cut(s) 174, 612
BpiI GAAGAC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BsaBI GATNNNNATC 1 cut(s) 626
BsaI GGTCTC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 150, 667
Bse8I GATNNNNATC 1 cut(s) 626
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 626
BseLI CCNNNNNNNGG 1 cut(s) 673
BseNI ACTGG 2 cut(s) 150, 667
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 578
Bsp143I GATC 3 cut(s) 199, 466, 514
BspACI CCGC 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 509
BspQI GCTCTTC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 54
BsrI ACTGG 2 cut(s) 150, 667
BssMI GATC 3 cut(s) 199, 466, 514
Bst4CI ACNGT 2 cut(s) 195, 373
Bst6I CTCTTC 1 cut(s) 112
BstAFI CTTAAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 3 cut(s) 202, 469, 517
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 199, 466, 514
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 402, 476
Csp6I GTAC 1 cut(s) 7
CviAII CATG 6 cut(s) 100, 177, 251, 285, 386, 700
CviJI RGCY 5 cut(s) 59, 94, 143, 249, 455
CviKI_1 RGCY 5 cut(s) 59, 94, 143, 249, 455
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 201, 468, 516
DpnII GATC 3 cut(s) 199, 466, 514
DraI TTTAAA 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 578
FaeI CATG 6 cut(s) 103, 180, 254, 288, 389, 703
FatI CATG 6 cut(s) 99, 176, 250, 284, 385, 699
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 92, 453
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 92, 453
FspBI CTAG 2 cut(s) 246, 314
GluI GCNGC 2 cut(s) 92, 453
HapII CCGG 1 cut(s) 362
Hin1II CATG 6 cut(s) 103, 180, 254, 288, 389, 703
HinfI GANTC 3 cut(s) 124, 219, 433
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 43, 191, 199, 432, 519
Hpy188III TCNNGA 2 cut(s) 290, 631
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 38, 81
HpyCH4III ACNGT 2 cut(s) 195, 373
HpyCH4V TGCA 3 cut(s) 484, 532, 625
Hsp92II CATG 6 cut(s) 103, 180, 254, 288, 389, 703
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 3 cut(s) 199, 466, 514
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 3 cut(s) 99, 148, 460
LpnPI CCDG 4 cut(s) 4, 163, 375, 680
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 174, 612
MaeI CTAG 2 cut(s) 246, 314
MaeIII GTNAC 2 cut(s) 220, 413
MalI GATC 3 cut(s) 201, 468, 516
MboI GATC 3 cut(s) 199, 466, 514
MboII GAAGA 4 cut(s) 129, 332, 410, 509
MflI RGATCY 1 cut(s) 514
MluCI AATT 4 cut(s) 616, 677, 688, 710
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 6 cut(s) 170, 410, 531, 532, 621, 663
MnlI CCTC 2 cut(s) 382, 436
MseI TTAA 4 cut(s) 113, 204, 299, 615
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 362
NdeII GATC 3 cut(s) 199, 466, 514
NlaIII CATG 6 cut(s) 103, 180, 254, 288, 389, 703
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 2 cut(s) 220, 413
NspI RCATGY 1 cut(s) 103
PciI ACATGT 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 124, 433
PflMI CCANNNNNTGG 1 cut(s) 673
PkrI GCNGC 2 cut(s) 93, 454
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 456
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 4 cut(s) 113, 204, 299, 615
SatI GCNGC 2 cut(s) 92, 453
Sau3AI GATC 3 cut(s) 199, 466, 514
SchI GAGTC 1 cut(s) 228
SetI ASST 2 cut(s) 96, 145
SfaNI GCATC 2 cut(s) 174, 612
SfcI CTRYAG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 4 cut(s) 616, 677, 688, 710
SsiI CCGC 1 cut(s) 452
SspI AATATT 1 cut(s) 593
SspMI CTAG 2 cut(s) 246, 314
TaaI ACNGT 2 cut(s) 195, 373
TaqI TCGA 1 cut(s) 289
TasI AATT 4 cut(s) 616, 677, 688, 710
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 2 cut(s) 124, 433
Tru1I TTAA 4 cut(s) 113, 204, 299, 615
Tru9I TTAA 4 cut(s) 113, 204, 299, 615
TscAI CASTG 2 cut(s) 409, 476
TseFI GTSAC 2 cut(s) 220, 413
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 2 cut(s) 220, 413
TspDTI ATGAA 5 cut(s) 220, 273, 411, 662, 681
TspRI CASTG 2 cut(s) 409, 476
Van91I CCANNNNNTGG 1 cut(s) 673
Vha464I CTTAAG 1 cut(s) 203
XapI RAATTY 1 cut(s) 688
XceI RCATGY 1 cut(s) 103
XspI CTAG 2 cut(s) 246, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.