Rroxscaffold_7G00215470

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000178
Physical Location & Seq
Reverse (-)
66100170 .. 66105949
5780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215470.1

Sequence Viewer

Length: 1527 bp
ATGTATTTCAAGCGGTGGCGCTATTCCCAAATTTTCACAAAGCGGTCTCCCAAAGTTATAAGCGCGCTATTCCCAAATTTTCACACAGCGGTCTCCCAAAGTTATAAGCGCCCTATTTCGTGTTCTTCACCTAACTCAAATTCATCTTCTCCTCCTCCACTCCTATTGCGTTCTTCACCTTCCATCTTCTCCTCCACTCATATCCGCTCCCTGCTTAAAGACGAGGTTGCTGGGCTTTTCATATTTCTGGTTCAAGGTTCAGCTAGAGACGAGAAGAAGGATTGGTTTTTGGAGTTCTGGGTTGGAAATGAAGAATTTGTGAATATGTACTCGAAGAGGCTTTGTGACGCTGGCTATACTACGTTCAAGCTTGCTCGAACTGTTATTACCTTTAATCAGTCCCTTTCCCCCTCGGTTCAAACTTTAGACACATTGGACTTGTTTGGCATCATTCCTTTTGCTGTTAAATTTGTTGAAGTTGATGTTGAAGAGACGTCATTACATAGAGATGACATGGAAATGATCGTTGTTGATTTGAATGCTAAAGATAGCGATGCAAAAGATGGCGACTTTAATGATGAAGATAATGAGTTGATGTCTTATGATGATATCGAGGACGACTCTACCACAAGCACCGGCAGCCCCATTGCACTCATCAGAAATGCTATTATCACTTCCATTCCTACTCATGTTCCAAAACATAATTGTCCACCTCAAGTTCAATCATCACCACTTATGCGAATGCTAAGATCAGGTTCAATCATCACCACTCATGTTCGAAAAAATGTTCCATTGCAAATTAAGAAGTGGTCTGAGCTCTCAAGAGATGATGTTGCATTGCTAATTCGTCATGCCCGTGAAAAATTCAAGTTGAGCAATGAGTCTCATGTGGATGAGGCAATTGAGAAACATATGATGAGATATTTTACCACTTGGCGCTATAATTTGCGTAAGAAATTTCTGAAATATGACTCAATAGAGGAAGCTATAGAAAATCGACCTGAAGATGTGGAAGAGGAAGATTGGAACTATTTGATTGCAAATCTGTGGCAAGATGGAAAGTGGCTGGAAACAAGTGAAAAAAACAGGAAAAATAGAGATAAGTTGGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGCCTTAGAACTGAAAATCGAAATTCTGAGAATGGAGAGGAAGTTGGTCGTATTGACCTTTTCAAGCTCACACGATATAGCGAAAAGAAATCTGCATGGGTTGGTGATACTGCAAAGAATGCTTTTGCAAATCAAAGGGCAGATCAAGCAGAAAGACGAGCAATGCAGCTTGCAGAGGAGTTGATGGCTGTGAAGTCTACTGCAGCTCAGCAAAATGAGGAGTTAAAGACAGTCAAAGCTGGTGCAGCTCAGCAAAATGAAGAGTTAGAAGCAGTAAAGGCTAGAGCCACTCAACAAAATGAAGAGTTAGAGGCACTAAAGGCAAGACAAAATCAGACCGACACACTTTTACTTAAATTGATGGCACAATTATCCCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

508

Amino Acids

58.36

Weight (kDa)

6.15

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 339 - 445 2.6e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 59, 105
AatII GACGTC 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 1340
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 13, 43, 89, 205
AcsI RAATTY 8 cut(s) 30, 76, 139, 314, 467, 863, 956, 1165
AcuI CTGAAG 1 cut(s) 1023
AcyI GRCGYC 1 cut(s) 494
AdeI CACNNNGTG 1 cut(s) 1121
AfaI GTAC 1 cut(s) 329
AluBI AGCT 9 cut(s) 263, 370, 817, 986, 1210, 1312, 1349, 1382, 1391
AluI AGCT 9 cut(s) 263, 370, 817, 986, 1210, 1312, 1349, 1382, 1391
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 5 cut(s) 51, 97, 261, 485, 888
ApeKI GCWGC 4 cut(s) 639, 1309, 1346, 1388
ApoI RAATTY 8 cut(s) 30, 76, 139, 314, 467, 863, 956, 1165
AspLEI GCGC 5 cut(s) 21, 65, 67, 111, 939
AsuHPI GGTGA 5 cut(s) 120, 168, 720, 757, 1259
AsuII TTCGAA 1 cut(s) 778
BanII GRGCYC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 4 cut(s) 651, 1321, 1358, 1400
BccI CCATC 5 cut(s) 191, 557, 1049, 1321, 1498
BcoDI GTCTC 5 cut(s) 51, 97, 261, 485, 888
BfaI CTAG 3 cut(s) 264, 1425, 1525
BfmI CTRYAG 2 cut(s) 987, 1344
BfoI RGCGCY 3 cut(s) 22, 112, 940
BisI GCNGC 4 cut(s) 640, 1310, 1347, 1389
BlpI GCTNAGC 2 cut(s) 1350, 1392
BlsI GCNGC 4 cut(s) 641, 1311, 1348, 1390
BmsI GCATC 2 cut(s) 456, 544
BplI GAGNNNNNCTC 2 cut(s) 605, 637
Bpu1102I GCTNAGC 2 cut(s) 1350, 1392
Bpu14I TTCGAA 1 cut(s) 778
BpuEI CTTGAG 2 cut(s) 699, 805
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 2 cut(s) 51, 97
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 1170, 1200
Bse118I RCCGGY 1 cut(s) 635
Bse3DI GCAATG 5 cut(s) 645, 791, 836, 883, 1311
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 898
BseMI GCAATG 5 cut(s) 645, 791, 836, 883, 1311
BseMII CTCAG 4 cut(s) 804, 1161, 1364, 1406
BsePI GCGCGC 1 cut(s) 63
BseRI GAGGAG 5 cut(s) 141, 144, 181, 1334, 1376
BseXI GCAGC 4 cut(s) 651, 1321, 1358, 1400
BseYI CCCAGC 1 cut(s) 230
BsgI GTGCAG 2 cut(s) 1143, 1407
Bsh1236I CGCG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 819
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 2 cut(s) 385, 1141
BsmAI GTCTC 5 cut(s) 51, 97, 261, 485, 888
BsmBI CGTCTC 2 cut(s) 261, 485
BsmFI GGGAC 2 cut(s) 385, 1141
BsmI GAATGC 3 cut(s) 544, 747, 1267
Bso31I GGTCTC 2 cut(s) 51, 97
Bsp119I TTCGAA 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 819
Bsp143I GATC 3 cut(s) 522, 749, 1285
Bsp1720I GCTNAGC 2 cut(s) 1350, 1392
BspACI CCGC 4 cut(s) 13, 43, 89, 205
BspCNI CTCAG 4 cut(s) 805, 1162, 1363, 1405
BspFNI CGCG 1 cut(s) 65
BspMAI CTGCAG 1 cut(s) 1348
BspT104I TTCGAA 1 cut(s) 778
BspTNI GGTCTC 2 cut(s) 51, 97
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 5 cut(s) 645, 791, 836, 883, 1311
BsrFI RCCGGY 1 cut(s) 635
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 411
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 3 cut(s) 522, 749, 1285
BssNI GRCGYC 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 382, 1375
Bst6I CTCTTC 5 cut(s) 329, 483, 1008, 1398, 1440
BstACI GRCGYC 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 778
BstC8I GCNNGC 4 cut(s) 65, 352, 372, 1314
BstDEI CTNAG 6 cut(s) 746, 813, 1148, 1170, 1350, 1392
BstF5I GGATG 1 cut(s) 898
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 3 cut(s) 22, 112, 940
BstHHI GCGC 5 cut(s) 21, 65, 67, 111, 939
BstKTI GATC 3 cut(s) 525, 752, 1288
BstMAI GTCTC 5 cut(s) 51, 97, 261, 485, 888
BstMBI GATC 3 cut(s) 522, 749, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 639, 1262, 1289, 1388, 1421, 1463
BstSFI CTRYAG 2 cut(s) 987, 1344
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 4 cut(s) 651, 1321, 1358, 1400
BtgZI GCGATG 1 cut(s) 567
BtsCI GGATG 1 cut(s) 898
Cac8I GCNNGC 4 cut(s) 65, 352, 372, 1314
CfoI GCGC 5 cut(s) 21, 65, 67, 111, 939
Cfr10I RCCGGY 1 cut(s) 635
CseI GACGC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 328
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 6 cut(s) 514, 689, 773, 851, 887, 1239
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 6 cut(s) 746, 813, 1148, 1170, 1350, 1392
DpnI GATC 3 cut(s) 524, 751, 1287
DpnII GATC 3 cut(s) 522, 749, 1285
DraIII CACNNNGTG 1 cut(s) 1121
Eam1104I CTCTTC 5 cut(s) 329, 483, 1008, 1398, 1440
EarI CTCTTC 5 cut(s) 329, 483, 1008, 1398, 1440
Ecl136II GAGCTC 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 819
Eco31I GGTCTC 2 cut(s) 51, 97
Eco32I GATATC 1 cut(s) 610
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 1023
EcoICRI GAGCTC 1 cut(s) 817
EcoRV GATATC 1 cut(s) 610
EcoT38I GRGCYC 1 cut(s) 819
Esp3I CGTCTC 2 cut(s) 261, 485
FaeI CATG 6 cut(s) 517, 692, 776, 854, 890, 1242
FaqI GGGAC 2 cut(s) 385, 1141
FatI CATG 6 cut(s) 513, 688, 772, 850, 886, 1238
FauNDI CATATG 1 cut(s) 912
FblI GTMKAC 1 cut(s) 1340
Fnu4HI GCNGC 4 cut(s) 640, 1310, 1347, 1389
FokI GGATG 1 cut(s) 905
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 4 cut(s) 640, 1310, 1347, 1389
FspBI CTAG 3 cut(s) 264, 1425, 1525
GlaI GCGC 5 cut(s) 20, 64, 66, 110, 938
GluI GCNGC 4 cut(s) 640, 1310, 1347, 1389
GsaI CCCAGC 1 cut(s) 234
HaeII RGCGCY 3 cut(s) 22, 112, 940
HapII CCGG 1 cut(s) 636
HgaI GACGC 1 cut(s) 356
HhaI GCGC 5 cut(s) 21, 65, 67, 111, 939
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 6 cut(s) 517, 692, 776, 854, 890, 1242
Hin6I GCGC 5 cut(s) 19, 63, 65, 109, 937
HinP1I GCGC 5 cut(s) 19, 63, 65, 109, 937
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 620, 881, 971
HpaII CCGG 1 cut(s) 636
HphI GGTGA 5 cut(s) 120, 168, 720, 757, 1259
Hpy166II GTNNAC 2 cut(s) 710, 1341
Hpy188I TCNGA 5 cut(s) 659, 814, 963, 1171, 1479
Hpy188III TCNNGA 1 cut(s) 822
Hpy8I GTNNAC 2 cut(s) 710, 1341
HpyAV CCTTC 2 cut(s) 189, 271
HpyCH4III ACNGT 2 cut(s) 382, 1375
HpyCH4IV ACGT 2 cut(s) 362, 494
HpyF10VI GCNNNNNNNGC 6 cut(s) 639, 1262, 1289, 1388, 1421, 1463
HpyF3I CTNAG 6 cut(s) 746, 813, 1148, 1170, 1350, 1392
HpySE526I ACGT 2 cut(s) 362, 494
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 6 cut(s) 517, 692, 776, 854, 890, 1242
HspAI GCGC 5 cut(s) 19, 63, 65, 109, 937
Kzo9I GATC 3 cut(s) 522, 749, 1285
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 4 cut(s) 651, 1321, 1358, 1400
LweI GCATC 2 cut(s) 456, 544
MaeI CTAG 3 cut(s) 264, 1425, 1525
MaeII ACGT 2 cut(s) 362, 494
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 524, 751, 1287
MbiI CCGCTC 1 cut(s) 207
MboI GATC 3 cut(s) 522, 749, 1285
MfeI CAATTG 1 cut(s) 900
MhlI GDGCHC 1 cut(s) 819
MlyI GAGTC 3 cut(s) 614, 890, 965
MmeI TCCRAC 2 cut(s) 283, 1086
MseI TTAA 7 cut(s) 216, 393, 465, 573, 801, 1367, 1497
MslI CAYNNNNRTG 4 cut(s) 507, 518, 855, 891
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 1 cut(s) 636
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 3 cut(s) 544, 747, 1267
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 6 cut(s) 639, 1262, 1289, 1388, 1421, 1463
NdeI CATATG 1 cut(s) 912
NdeII GATC 3 cut(s) 522, 749, 1285
NlaIII CATG 6 cut(s) 517, 692, 776, 854, 890, 1242
NmuCI GTSAC 1 cut(s) 344
NspV TTCGAA 1 cut(s) 778
PauI GCGCGC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 853
PctI GAATGC 3 cut(s) 544, 747, 1267
PkrI GCNGC 4 cut(s) 641, 1311, 1348, 1390
PleI GAGTC 3 cut(s) 614, 889, 965
PpsI GAGTC 3 cut(s) 614, 889, 965
PsiI TTATAA 2 cut(s) 59, 105
Psp124BI GAGCTC 1 cut(s) 819
PspFI CCCAGC 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstI CTGCAG 1 cut(s) 1348
PteI GCGCGC 1 cut(s) 63
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 4 cut(s) 507, 518, 855, 891
SacI GAGCTC 1 cut(s) 819
SaqAI TTAA 7 cut(s) 216, 393, 465, 573, 801, 1367, 1497
SatI GCNGC 4 cut(s) 640, 1310, 1347, 1389
Sau3AI GATC 3 cut(s) 522, 749, 1285
SchI GAGTC 3 cut(s) 614, 890, 965
SduI GDGCHC 1 cut(s) 819
SfaNI GCATC 2 cut(s) 456, 544
SfcI CTRYAG 2 cut(s) 987, 1344
SfuI TTCGAA 1 cut(s) 778
SmiMI CAYNNNNRTG 4 cut(s) 507, 518, 855, 891
SmlI CTYRAG 2 cut(s) 714, 820
SmoI CTYRAG 2 cut(s) 714, 820
SsiI CCGC 4 cut(s) 13, 43, 89, 205
SspMI CTAG 3 cut(s) 264, 1425, 1525
SstI GAGCTC 1 cut(s) 819
TaaI ACNGT 2 cut(s) 382, 1375
TaiI ACGT 2 cut(s) 365, 497
TaqI TCGA 6 cut(s) 332, 376, 612, 778, 997, 1162
TaqII GACCGA 1 cut(s) 1496
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 7 cut(s) 216, 393, 465, 573, 801, 1367, 1497
Tru9I TTAA 7 cut(s) 216, 393, 465, 573, 801, 1367, 1497
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 639, 1309, 1346, 1388
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 6 cut(s) 132, 229, 324, 594, 1416, 1458
XapI RAATTY 8 cut(s) 30, 76, 139, 314, 467, 863, 956, 1165
XmiI GTMKAC 1 cut(s) 1340
XspI CTAG 3 cut(s) 264, 1425, 1525
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.