pycom03g11360

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000178
Physical Location & Seq
Reverse (-)
11070008 .. 11070877
870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11360.1

Sequence Viewer

Length: 870 bp
ATGGACAAACAGTGGATACAGAATCATAATAGATGTGCTGTTGAGTACTTGGATGGAATAGAAGAGTTCGTTGATTTCGCAACTAGACACAACGTAGGTTCAACTCATATCCGATGTCCGTGTAGGAGGTGTAACAACTCAATGAGGGAGACATTCGAAAATGTTCGATTTCATTTAATAAGAAATGGGATGATGGAGACCTATACTACTTGGTATCATCATGGAGAACGATTAGACCAAGCTTCGTCTTCATACATGACACGAGTGGAGACTGTTGAATCTAATGTCGATCCTAATGAACAAGTTATGGATATTCTAAATGACGTTTATCCATACACCTCGACCACCACCAATAAGGAAGGGGGAGATGACGGTCATCCAACTATGGACAGTGAGGCATTCAAAAACTATGAAAAACTATTGAAAAATGCCAAGCAAGAATTATATCCGGGTTGCGAGAACTTTTCGGTGCTCACGGCAATTGTGGAGTTGATGCATGGCAAGATGAAGTTTCGTTTGTTAAACAAGTGTTTTGATTACTTTTTGGGAGTTATCAAGAGGATGCTTCCAAAGGACAATTGTTTACCTGAAGATCATAAAAGTGCCCAAAAAGTGTCGAAGGGTCTTGGATTGGGGTATGAAAAAATTCACGCATGTGTAAATAATTGTATATTGTTCTATAAGGAGAACATACAGTTGGATAAATGCCCTGTATGCAATGAGCCGAGGTTTAAAATGACATCACAGAATAGAAAGACGAAGATTCCACAAAAAGTAATGCGTTATCTTCCATTAAAGCCTAGGTTGCAGCGATTGTACATGTCGATGCATACTGCAACCGATATGAGATGGCATAAAGAAGACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

290

Amino Acids

34.03

Weight (kDa)

8.54

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 1.9e-22 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 645
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 2 cut(s) 47, 818
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 4 cut(s) 102, 278, 403, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AleI CACNNNNGTG 1 cut(s) 654
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 3 cut(s) 143, 191, 263
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 808
ApoI RAATTY 1 cut(s) 645
Asp700I GAANNNNTTC 2 cut(s) 162, 645
AspA2I CCTAGG 1 cut(s) 800
AsuC2I CCSGG 1 cut(s) 450
AsuII TTCGAA 1 cut(s) 156
AvrII CCTAGG 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 607
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 820
BccI CCATC 3 cut(s) 47, 187, 843
BceAI ACGGC 1 cut(s) 492
BciVI GTATCC 1 cut(s) 9
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 3 cut(s) 143, 191, 263
BfaI CTAG 2 cut(s) 84, 801
BfuI GTATCC 1 cut(s) 9
BisI GCNGC 1 cut(s) 809
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 1 cut(s) 810
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 3 cut(s) 483, 552, 816
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 725, 800
Bse3DI GCAATG 1 cut(s) 724
BseDI CCNNGG 2 cut(s) 725, 800
BseGI GGATG 4 cut(s) 58, 195, 376, 567
BseMI GCAATG 1 cut(s) 724
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 1 cut(s) 449
BsmAI GTCTC 3 cut(s) 143, 191, 263
BsmI GAATGC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 474, 607
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 2 cut(s) 289, 592
BspPI GGATC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 724
BsrGI TGTACA 1 cut(s) 816
BssECI CCNNGG 2 cut(s) 725, 800
BssMI GATC 2 cut(s) 289, 592
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 800
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 5 cut(s) 12, 274, 374, 392, 696
Bst6I CTCTTC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 816
BstBI TTCGAA 1 cut(s) 156
BstF5I GGATG 4 cut(s) 58, 195, 376, 567
BstKTI GATC 2 cut(s) 292, 595
BstMAI GTCTC 3 cut(s) 143, 191, 263
BstMBI GATC 2 cut(s) 289, 592
BstMWI GCNNNNNNNGC 2 cut(s) 714, 805
BstNSI RCATGY 2 cut(s) 657, 823
BstSCI CCNGG 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 820
BstV2I GAAGAC 1 cut(s) 240
BsuI GTATCC 1 cut(s) 9
BtsCI GGATG 4 cut(s) 58, 195, 376, 567
BtsIMutI CAGTG 2 cut(s) 17, 397
Csp6I GTAC 2 cut(s) 46, 817
CviAII CATG 5 cut(s) 221, 256, 497, 654, 820
CviJI RGCY 3 cut(s) 242, 724, 799
CviKI_1 RGCY 3 cut(s) 242, 724, 799
CviQI GTAC 2 cut(s) 46, 817
DpnI GATC 2 cut(s) 291, 594
DpnII GATC 2 cut(s) 289, 592
DraI TTTAAA 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 800
Eco31I GGTCTC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 609
EcoT14I CCWWGG 1 cut(s) 800
EcoT22I ATGCAT 2 cut(s) 498, 831
ErhI CCWWGG 1 cut(s) 800
FaeI CATG 5 cut(s) 224, 259, 500, 657, 823
FatI CATG 5 cut(s) 220, 255, 496, 653, 819
Fnu4HI GCNGC 1 cut(s) 809
FokI GGATG 4 cut(s) 65, 202, 363, 574
Fsp4HI GCNGC 1 cut(s) 809
FspBI CTAG 2 cut(s) 84, 801
GluI GCNGC 1 cut(s) 809
HapII CCGG 1 cut(s) 449
Hin1II CATG 5 cut(s) 224, 259, 500, 657, 823
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 3 cut(s) 22, 278, 763
HpaII CCGG 1 cut(s) 449
Hpy166II GTNNAC 1 cut(s) 584
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 556
Hpy8I GTNNAC 1 cut(s) 584
HpyAV CCTTC 2 cut(s) 353, 613
HpyCH4III ACNGT 5 cut(s) 12, 274, 374, 392, 696
HpyCH4IV ACGT 2 cut(s) 93, 324
HpyCH4V TGCA 5 cut(s) 496, 717, 808, 829, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 714, 805
HpySE526I ACGT 2 cut(s) 93, 324
Hsp92II CATG 5 cut(s) 224, 259, 500, 657, 823
Kzo9I GATC 2 cut(s) 289, 592
LpnPI CCDG 4 cut(s) 462, 600, 723, 850
Lsp1109I GCAGC 1 cut(s) 820
LweI GCATC 3 cut(s) 483, 552, 816
MaeI CTAG 2 cut(s) 84, 801
MaeII ACGT 2 cut(s) 93, 324
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 291, 594
MboI GATC 2 cut(s) 289, 592
MboII GAAGA 5 cut(s) 74, 240, 602, 772, 779
MfeI CAATTG 2 cut(s) 480, 577
MhlI GDGCHC 2 cut(s) 474, 607
MluCI AATT 5 cut(s) 440, 480, 577, 645, 664
MmeI TCCRAC 2 cut(s) 404, 678
MnlI CCTC 6 cut(s) 120, 138, 349, 388, 552, 720
Mph1103I ATGCAT 2 cut(s) 498, 831
MroXI GAANNNNTTC 2 cut(s) 162, 645
MseI TTAA 4 cut(s) 176, 521, 732, 794
MslI CAYNNNNRTG 3 cut(s) 600, 654, 824
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 450
MunI CAATTG 2 cut(s) 480, 577
Mva1269I GAATGC 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 714, 805
NciI CCSGG 1 cut(s) 450
NdeII GATC 2 cut(s) 289, 592
NlaIII CATG 5 cut(s) 224, 259, 500, 657, 823
NmeAIII GCCGAG 1 cut(s) 750
NsiI ATGCAT 2 cut(s) 498, 831
NspI RCATGY 2 cut(s) 657, 823
NspV TTCGAA 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 654
PciI ACATGT 1 cut(s) 819
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 2 cut(s) 162, 645
PfeI GAWTC 3 cut(s) 22, 278, 763
PkrI GCNGC 1 cut(s) 810
PscI ACATGT 1 cut(s) 819
RsaI GTAC 2 cut(s) 47, 818
RsaNI GTAC 2 cut(s) 46, 817
RseI CAYNNNNRTG 3 cut(s) 600, 654, 824
SaqAI TTAA 4 cut(s) 176, 521, 732, 794
SatI GCNGC 1 cut(s) 809
Sau3AI GATC 2 cut(s) 289, 592
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 2 cut(s) 474, 607
SfaNI GCATC 3 cut(s) 483, 552, 816
SfuI TTCGAA 1 cut(s) 156
SmiMI CAYNNNNRTG 3 cut(s) 600, 654, 824
Sse9I AATT 5 cut(s) 440, 480, 577, 645, 664
SspMI CTAG 2 cut(s) 84, 801
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 1 cut(s) 800
TaaI ACNGT 5 cut(s) 12, 274, 374, 392, 696
TaiI ACGT 2 cut(s) 96, 327
TaqI TCGA 6 cut(s) 156, 166, 288, 341, 617, 824
TasI AATT 5 cut(s) 440, 480, 577, 645, 664
TatI WGTACW 2 cut(s) 45, 816
TfiI GAWTC 3 cut(s) 22, 278, 763
Tru1I TTAA 4 cut(s) 176, 521, 732, 794
Tru9I TTAA 4 cut(s) 176, 521, 732, 794
TscAI CASTG 2 cut(s) 17, 397
TseI GCWGC 1 cut(s) 808
TspDTI ATGAA 6 cut(s) 161, 240, 312, 426, 521, 654
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 2 cut(s) 17, 397
XapI RAATTY 1 cut(s) 645
XceI RCATGY 2 cut(s) 657, 823
XmaJI CCTAGG 1 cut(s) 800
XmnI GAANNNNTTC 2 cut(s) 162, 645
XspI CTAG 2 cut(s) 84, 801
ZrmI AGTACT 1 cut(s) 47
Zsp2I ATGCAT 2 cut(s) 498, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.