Rmu_sc0000293.1_g000017

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000293.1
OG0000178
Physical Location & Seq
Forward (+)
90306 .. 91666
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000293.1_g000017.1.cds

Sequence Viewer

Length: 675 bp
atggattgcaataactttcgtaaatatagcccaaaccaagttgaggatcatttatatgcaaatggaatggctaagcattacactaagtggacatatcatggagaaaatgatgatgattttgaactagaagatgatattttggaatctgaaaatgaagaggatgttgatgatgtagttgaaatgttaaatgatttccaagctcatgatgatagggaatctcaagaacatgtccctattatggaagaaaataaatttagacgattgatgagggatgcagagcaagaattatatcctggttgtcgaaaattctctaaattatccttcactgtaaagctgcttcatttaaagataatgtttcgtggtagcaacaagttcttttcagcgttgcttgagttagtgaaagaggcattacctaatggaaatacatgtcctagatctcattatgaatcaaagaagattatacgagacttgggtcttagttatgacaagatccatgtgacgtcccgaacccgaatttaccagtttacaagtctttcgatggttgagaaagttattggaaatgttgatatgatgctgtggatgaaatttggtggccggaggaggagttggccgccgcatgaacagtgtcatcgcatgaatagtgcgatggtgaatagtgcggtgtatgaacagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

224

Amino Acids

26.54

Weight (kDa)

5.7

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 503
AciI CCGC 3 cut(s) 611, 614, 659
AclWI GGATC 2 cut(s) 54, 484
AcoI YGGCCR 2 cut(s) 592, 608
AcsI RAATTY 4 cut(s) 251, 305, 513, 584
AcyI GRCGYC 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 43, 238
AflIII ACRYGT 2 cut(s) 226, 425
AgsI TTSAA 2 cut(s) 122, 179
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 200, 334
AluI AGCT 2 cut(s) 200, 334
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 2 cut(s) 54, 484
AoxI GGCC 2 cut(s) 592, 608
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 4 cut(s) 251, 305, 513, 584
AsuHPI GGTGA 1 cut(s) 661
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BbvI GCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 532, 640
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 2 cut(s) 125, 432
BglII AGATCT 1 cut(s) 434
BisI GCNGC 3 cut(s) 335, 611, 614
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 3 cut(s) 336, 612, 615
Bme1390I CCNGG 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 262, 561
BoxI GACNNNNGTC 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 204, 410
BsaHI GRCGYC 1 cut(s) 500
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 238
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 3 cut(s) 166, 277, 585
BseLI CCNNNNNNNGG 2 cut(s) 43, 238
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 2 cut(s) 613, 616
BseXI GCAGC 1 cut(s) 321
BshFI GGCC 2 cut(s) 594, 610
BsiSI CCGG 1 cut(s) 595
BslFI GGGAC 2 cut(s) 215, 487
BslI CCNNNNNNNGG 2 cut(s) 43, 238
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 2 cut(s) 215, 487
BsnI GGCC 2 cut(s) 594, 610
Bsp143I GATC 3 cut(s) 46, 434, 489
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 3 cut(s) 611, 614, 659
BspANI GGCC 2 cut(s) 594, 610
BspHI TCATGA 1 cut(s) 202
BspPI GGATC 2 cut(s) 54, 484
BsrI ACTGG 1 cut(s) 520
BssMI GATC 3 cut(s) 46, 434, 489
BssNI GRCGYC 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 328, 624, 672
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 72, 84, 476
BstF5I GGATG 3 cut(s) 166, 277, 585
BstKTI GATC 3 cut(s) 49, 437, 492
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 3 cut(s) 46, 434, 489
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 2 cut(s) 230, 429
BstPAI GACNNNNGTC 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 321
BstX2I RGATCY 2 cut(s) 434, 489
BstYI RGATCY 2 cut(s) 434, 489
BsuRI GGCC 2 cut(s) 594, 610
BtgZI GCGATG 2 cut(s) 614, 659
BtsCI GGATG 3 cut(s) 166, 277, 585
BtsIMutI CAGTG 2 cut(s) 324, 629
CciI TCATGA 1 cut(s) 202
CviAII CATG 7 cut(s) 98, 203, 227, 426, 494, 617, 634
CviJI RGCY 6 cut(s) 30, 71, 200, 334, 594, 610
CviKI_1 RGCY 6 cut(s) 30, 71, 200, 334, 594, 610
DdeI CTNAG 3 cut(s) 72, 84, 476
DpnI GATC 3 cut(s) 48, 436, 491
DpnII GATC 3 cut(s) 46, 434, 489
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 87
EaeI YGGCCR 2 cut(s) 592, 608
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 7 cut(s) 101, 206, 230, 429, 497, 620, 637
FaqI GGGAC 2 cut(s) 215, 487
FatI CATG 7 cut(s) 97, 202, 226, 425, 493, 616, 633
Fnu4HI GCNGC 3 cut(s) 335, 611, 614
FokI GGATG 3 cut(s) 173, 284, 592
Fsp4HI GCNGC 3 cut(s) 335, 611, 614
FspBI CTAG 2 cut(s) 125, 432
GluI GCNGC 3 cut(s) 335, 611, 614
HaeIII GGCC 2 cut(s) 594, 610
HapII CCGG 1 cut(s) 595
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 7 cut(s) 101, 206, 230, 429, 497, 620, 637
HinfI GANTC 3 cut(s) 143, 215, 446
HpaII CCGG 1 cut(s) 595
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 2 cut(s) 90, 525
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 203, 221, 504
Hpy8I GTNNAC 2 cut(s) 90, 525
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 3 cut(s) 328, 624, 672
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 3 cut(s) 9, 59, 275
HpyF3I CTNAG 3 cut(s) 72, 84, 476
HpySE526I ACGT 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 7 cut(s) 101, 206, 230, 429, 497, 620, 637
Kzo9I GATC 3 cut(s) 46, 434, 489
LpnPI CCDG 4 cut(s) 279, 306, 533, 608
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 2 cut(s) 262, 561
MaeI CTAG 2 cut(s) 125, 432
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 496
MalI GATC 3 cut(s) 48, 436, 491
MboI GATC 3 cut(s) 46, 434, 489
MboII GAAGA 4 cut(s) 140, 167, 254, 466
MflI RGATCY 2 cut(s) 434, 489
MluCI AATT 6 cut(s) 251, 284, 305, 314, 513, 584
MnlI CCTC 6 cut(s) 37, 151, 261, 397, 591, 594
MseI TTAA 2 cut(s) 185, 344
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
NdeII GATC 3 cut(s) 46, 434, 489
NlaIII CATG 7 cut(s) 101, 206, 230, 429, 497, 620, 637
NmuCI GTSAC 1 cut(s) 496
NspI RCATGY 2 cut(s) 230, 429
PagI TCATGA 1 cut(s) 202
PciI ACATGT 2 cut(s) 226, 425
PfeI GAWTC 3 cut(s) 143, 215, 446
PkrI GCNGC 3 cut(s) 336, 612, 615
PscI ACATGT 2 cut(s) 226, 425
PshAI GACNNNNGTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PsuI RGATCY 2 cut(s) 434, 489
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 185, 344
SatI GCNGC 3 cut(s) 335, 611, 614
Sau3AI GATC 3 cut(s) 46, 434, 489
ScrFI CCNGG 1 cut(s) 294
SetI ASST 4 cut(s) 202, 336, 415, 503
SfaNI GCATC 2 cut(s) 262, 561
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 219, 389
SmoI CTYRAG 2 cut(s) 219, 389
Sse9I AATT 6 cut(s) 251, 284, 305, 314, 513, 584
SsiI CCGC 3 cut(s) 611, 614, 659
SspMI CTAG 2 cut(s) 125, 432
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 328, 624, 672
TaiI ACGT 1 cut(s) 503
TaqI TCGA 2 cut(s) 301, 536
TasI AATT 6 cut(s) 251, 284, 305, 314, 513, 584
TauI GCSGC 2 cut(s) 613, 616
TfiI GAWTC 3 cut(s) 143, 215, 446
Tru1I TTAA 2 cut(s) 185, 344
Tru9I TTAA 2 cut(s) 185, 344
TscAI CASTG 2 cut(s) 331, 629
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 6 cut(s) 168, 329, 459, 596, 633, 650
TspRI CASTG 2 cut(s) 331, 629
XapI RAATTY 4 cut(s) 251, 305, 513, 584
XceI RCATGY 2 cut(s) 230, 429
XspI CTAG 2 cut(s) 125, 432
ZraI GACGTC 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.