Rroxscaffold_5G00357170

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000178
Physical Location & Seq
Reverse (-)
36748165 .. 36751580
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357170.1

Sequence Viewer

Length: 312 bp
ATGGACGGATTTCTTGGGCATTTTTGGAAGGACGGTCAAATCCAGAGTATTTTGATGGAATCGCAAATTTCATTGATTATGCAACTAGCTAGGCATGTAAAGGACAGTGATGGAAGAATCTATTGTCTATACAAAAAAAAATGTCAAAATGGAGATAGAGAAGTTCCAACAGAAGTGCACAGACATCTTCTATACAAGGGTATTCTACAAAGCTATACAGTATGGTATAAACATGGGGAGAAGGAAGATAATGATAGTGGTAAGAGTGGTGATAGTGACACTGATAGTGATGGTAATGAGGCTGCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

103

Amino Acids

11.79

Weight (kDa)

5.9

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 26 - 80 1.5e-10 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 66
AluBI AGCT 2 cut(s) 89, 213
AluI AGCT 2 cut(s) 89, 213
Alw21I GWGCWC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 176
ApaLI GTGCAC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 49, 104, 284
BfaI CTAG 2 cut(s) 86, 90
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 35, 107, 220
BstNSI RCATGY 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 112, 279
CviAII CATG 2 cut(s) 95, 233
CviJI RGCY 3 cut(s) 89, 213, 302
CviKI_1 RGCY 3 cut(s) 89, 213, 302
FaeI CATG 2 cut(s) 98, 236
FaiI YATR 8 cut(s) 80, 96, 130, 193, 216, 223, 228, 234
FatI CATG 2 cut(s) 94, 232
Fnu4HI GCNGC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 86, 90
GluI GCNGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 98, 236
HinfI GANTC 2 cut(s) 59, 117
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 22, 235
HpyCH4III ACNGT 3 cut(s) 35, 107, 220
HpyCH4V TGCA 2 cut(s) 82, 178
Hsp92II CATG 2 cut(s) 98, 236
LpnPI CCDG 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 289
MaeI CTAG 2 cut(s) 86, 90
MaeIII GTNAC 1 cut(s) 275
MboII GAAGA 3 cut(s) 126, 179, 257
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 1 cut(s) 292
NlaIII CATG 2 cut(s) 98, 236
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 98
PfeI GAWTC 2 cut(s) 59, 117
PkrI GCNGC 1 cut(s) 304
SatI GCNGC 1 cut(s) 303
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 91, 215
SgeI CNNG 7 cut(s) 26, 55, 98, 102, 107, 208, 245
Sse9I AATT 1 cut(s) 66
SspMI CTAG 2 cut(s) 86, 90
TaaI ACNGT 3 cut(s) 35, 107, 220
TasI AATT 1 cut(s) 66
TfiI GAWTC 2 cut(s) 59, 117
TscAI CASTG 2 cut(s) 112, 286
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 112, 286
VneI GTGCAC 1 cut(s) 176
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 98
XspI CTAG 2 cut(s) 86, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.