bromo domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Bromodomain | PF00439 | 80 - 160 | 4.8e-14 | Bromodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 423 |
| Acc16I | TGCGCA | 1 cut(s) | 129 |
| AccI | GTMKAC | 2 cut(s) | 392, 850 |
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 1 cut(s) | 239 |
| AclWI | GGATC | 3 cut(s) | 33, 290, 303 |
| AcsI | RAATTY | 3 cut(s) | 503, 630, 829 |
| AcyI | GRCGYC | 1 cut(s) | 420 |
| AfaI | GTAC | 4 cut(s) | 276, 385, 715, 820 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 726 |
| AflII | CTTAAG | 1 cut(s) | 68 |
| AflIII | ACRYGT | 1 cut(s) | 805 |
| AgsI | TTSAA | 6 cut(s) | 283, 377, 415, 653, 703, 803 |
| AjnI | CCWGG | 1 cut(s) | 637 |
| AluBI | AGCT | 5 cut(s) | 272, 305, 524, 573, 626 |
| AluI | AGCT | 5 cut(s) | 272, 305, 524, 573, 626 |
| Alw26I | GTCTC | 1 cut(s) | 154 |
| AlwI | GGATC | 3 cut(s) | 33, 290, 303 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 527 |
| Ama87I | CYCGRG | 2 cut(s) | 151, 735 |
| AoxI | GGCC | 1 cut(s) | 675 |
| ApeKI | GCWGC | 4 cut(s) | 230, 269, 521, 524 |
| ApoI | RAATTY | 3 cut(s) | 503, 630, 829 |
| AseI | ATTAAT | 1 cut(s) | 858 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 130 |
| AspS9I | GGNCC | 4 cut(s) | 478, 602, 675, 814 |
| AsuC2I | CCSGG | 2 cut(s) | 736, 737 |
| AsuHPI | GGTGA | 4 cut(s) | 83, 92, 505, 695 |
| AvaI | CYCGRG | 2 cut(s) | 151, 735 |
| AvaII | GGWCC | 3 cut(s) | 478, 602, 814 |
| BamHI | GGATCC | 1 cut(s) | 295 |
| BauI | CACGAG | 1 cut(s) | 597 |
| BbsI | GAAGAC | 1 cut(s) | 599 |
| BbvI | GCAGC | 4 cut(s) | 217, 281, 511, 533 |
| BccI | CCATC | 3 cut(s) | 14, 91, 378 |
| BceAI | ACGGC | 1 cut(s) | 662 |
| BcgI | CGANNNNNNTGC | 5 cut(s) | 90, 124, 185, 219, 874 |
| BciT130I | CCWGG | 1 cut(s) | 639 |
| BcnI | CCSGG | 2 cut(s) | 736, 737 |
| BcoDI | GTCTC | 1 cut(s) | 154 |
| BfaI | CTAG | 3 cut(s) | 159, 623, 722 |
| BfrI | CTTAAG | 1 cut(s) | 68 |
| BisI | GCNGC | 4 cut(s) | 231, 270, 522, 525 |
| BlsI | GCNGC | 4 cut(s) | 232, 271, 523, 526 |
| Bme1390I | CCNGG | 3 cut(s) | 639, 736, 737 |
| Bme18I | GGWCC | 3 cut(s) | 478, 602, 814 |
| BmeT110I | CYCGRG | 2 cut(s) | 151, 735 |
| BmgT120I | GGNCC | 4 cut(s) | 478, 602, 675, 814 |
| BmiI | GGNNCC | 3 cut(s) | 170, 297, 691 |
| BmrFI | CCNGG | 3 cut(s) | 639, 736, 737 |
| BmsI | GCATC | 2 cut(s) | 126, 256 |
| BpiI | GAAGAC | 1 cut(s) | 599 |
| BpmI | CTGGAG | 1 cut(s) | 660 |
| BpuMI | CCSGG | 2 cut(s) | 736, 737 |
| BsaBI | GATNNNNATC | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 1 cut(s) | 420 |
| BsaJI | CCNNGG | 2 cut(s) | 291, 735 |
| BsaWI | WCCGGW | 1 cut(s) | 669 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 726 |
| Bse1I | ACTGG | 1 cut(s) | 17 |
| Bse8I | GATNNNNATC | 1 cut(s) | 24 |
| BseBI | CCWGG | 1 cut(s) | 639 |
| BseDI | CCNNGG | 2 cut(s) | 291, 735 |
| BseGI | GGATG | 2 cut(s) | 271, 412 |
| BseJI | GATNNNNATC | 1 cut(s) | 24 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 726 |
| BseMII | CTCAG | 1 cut(s) | 299 |
| BseNI | ACTGG | 1 cut(s) | 17 |
| BseXI | GCAGC | 4 cut(s) | 217, 281, 511, 533 |
| BsgI | GTGCAG | 3 cut(s) | 77, 427, 556 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshFI | GGCC | 1 cut(s) | 677 |
| BsiHKCI | CYCGRG | 2 cut(s) | 151, 735 |
| BsiSI | CCGG | 2 cut(s) | 670, 736 |
| BslFI | GGGAC | 1 cut(s) | 565 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 726 |
| BsmAI | GTCTC | 1 cut(s) | 154 |
| BsmFI | GGGAC | 1 cut(s) | 565 |
| BsnI | GGCC | 1 cut(s) | 677 |
| BsoBI | CYCGRG | 2 cut(s) | 151, 735 |
| Bsp1407I | TGTACA | 1 cut(s) | 713 |
| Bsp143I | GATC | 2 cut(s) | 25, 295 |
| BspACI | CCGC | 1 cut(s) | 239 |
| BspANI | GGCC | 1 cut(s) | 677 |
| BspCNI | CTCAG | 1 cut(s) | 300 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspLI | GGNNCC | 3 cut(s) | 170, 297, 691 |
| BspPI | GGATC | 3 cut(s) | 33, 290, 303 |
| BspTI | CTTAAG | 1 cut(s) | 68 |
| BsrGI | TGTACA | 1 cut(s) | 713 |
| BsrI | ACTGG | 1 cut(s) | 17 |
| BssECI | CCNNGG | 2 cut(s) | 291, 735 |
| BssMI | GATC | 2 cut(s) | 25, 295 |
| BssNAI | GTATAC | 1 cut(s) | 393 |
| BssNI | GRCGYC | 1 cut(s) | 420 |
| BssSI | CACGAG | 1 cut(s) | 597 |
| Bst1107I | GTATAC | 1 cut(s) | 393 |
| Bst2BI | CACGAG | 1 cut(s) | 597 |
| Bst2UI | CCWGG | 1 cut(s) | 639 |
| Bst4CI | ACNGT | 4 cut(s) | 55, 125, 458, 848 |
| BstACI | GRCGYC | 1 cut(s) | 420 |
| BstAFI | CTTAAG | 1 cut(s) | 68 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 64, 136 |
| BstAUI | TGTACA | 1 cut(s) | 713 |
| BstDEI | CTNAG | 1 cut(s) | 308 |
| BstDSI | CCRYGG | 1 cut(s) | 291 |
| BstEII | GGTNACC | 1 cut(s) | 312 |
| BstF5I | GGATG | 2 cut(s) | 271, 412 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 1 cut(s) | 130 |
| BstKTI | GATC | 2 cut(s) | 28, 298 |
| BstMAI | GTCTC | 1 cut(s) | 154 |
| BstMBI | GATC | 2 cut(s) | 25, 295 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 136, 187, 236 |
| BstNI | CCWGG | 1 cut(s) | 639 |
| BstNSI | RCATGY | 2 cut(s) | 809, 889 |
| BstPI | GGTNACC | 1 cut(s) | 312 |
| BstSCI | CCNGG | 3 cut(s) | 637, 734, 735 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 4 cut(s) | 217, 281, 511, 533 |
| BstV2I | GAAGAC | 1 cut(s) | 599 |
| BstX2I | RGATCY | 1 cut(s) | 295 |
| BstYI | RGATCY | 1 cut(s) | 295 |
| BstZ17I | GTATAC | 1 cut(s) | 393 |
| BsuRI | GGCC | 1 cut(s) | 677 |
| BtgI | CCRYGG | 1 cut(s) | 291 |
| BtsCI | GGATG | 2 cut(s) | 271, 412 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 463 |
| CaiI | CAGNNNCTG | 1 cut(s) | 527 |
| CfoI | GCGC | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 4 cut(s) | 478, 602, 675, 814 |
| Cfr9I | CCCGGG | 1 cut(s) | 735 |
| Csp6I | GTAC | 4 cut(s) | 275, 384, 714, 819 |
| CviAII | CATG | 4 cut(s) | 197, 762, 806, 886 |
| CviJI | RGCY | 9 cut(s) | 272, 305, 524, 573, 626, 660, 677, 690, 719 |
| CviKI_1 | RGCY | 9 cut(s) | 272, 305, 524, 573, 626, 660, 677, 690, 719 |
| CviQI | GTAC | 4 cut(s) | 275, 384, 714, 819 |
| DdeI | CTNAG | 1 cut(s) | 308 |
| DpnI | GATC | 2 cut(s) | 27, 297 |
| DpnII | GATC | 2 cut(s) | 25, 295 |
| Eco47I | GGWCC | 3 cut(s) | 478, 602, 814 |
| Eco88I | CYCGRG | 2 cut(s) | 151, 735 |
| Eco91I | GGTNACC | 1 cut(s) | 312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 602 |
| EcoO65I | GGTNACC | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 637 |
| FaeI | CATG | 4 cut(s) | 200, 765, 809, 889 |
| FaiI | YATR | 9 cut(s) | 78, 198, 257, 335, 393, 485, 763, 807, 887 |
| FaqI | GGGAC | 1 cut(s) | 565 |
| FatI | CATG | 4 cut(s) | 196, 761, 805, 885 |
| FblI | GTMKAC | 2 cut(s) | 392, 850 |
| Fnu4HI | GCNGC | 4 cut(s) | 231, 270, 522, 525 |
| FokI | GGATG | 2 cut(s) | 278, 419 |
| Fsp4HI | GCNGC | 4 cut(s) | 231, 270, 522, 525 |
| FspBI | CTAG | 3 cut(s) | 159, 623, 722 |
| FspI | TGCGCA | 1 cut(s) | 129 |
| GlaI | GCGC | 1 cut(s) | 129 |
| GluI | GCNGC | 4 cut(s) | 231, 270, 522, 525 |
| GsuI | CTGGAG | 1 cut(s) | 660 |
| HaeIII | GGCC | 1 cut(s) | 677 |
| HapII | CCGG | 2 cut(s) | 670, 736 |
| HhaI | GCGC | 1 cut(s) | 130 |
| Hin1I | GRCGYC | 1 cut(s) | 420 |
| Hin1II | CATG | 4 cut(s) | 200, 765, 809, 889 |
| Hin6I | GCGC | 1 cut(s) | 128 |
| HinP1I | GCGC | 1 cut(s) | 128 |
| HinfI | GANTC | 2 cut(s) | 88, 185 |
| HpaII | CCGG | 2 cut(s) | 670, 736 |
| HphI | GGTGA | 4 cut(s) | 83, 92, 505, 695 |
| Hpy166II | GTNNAC | 4 cut(s) | 393, 714, 844, 851 |
| Hpy188I | TCNGA | 4 cut(s) | 19, 309, 403, 709 |
| Hpy188III | TCNNGA | 2 cut(s) | 172, 508 |
| Hpy8I | GTNNAC | 4 cut(s) | 393, 714, 844, 851 |
| HpyAV | CCTTC | 4 cut(s) | 490, 680, 760, 787 |
| HpyCH4III | ACNGT | 4 cut(s) | 55, 125, 458, 848 |
| HpyCH4IV | ACGT | 2 cut(s) | 420, 695 |
| HpyCH4V | TGCA | 7 cut(s) | 58, 196, 269, 366, 444, 537, 885 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 136, 187, 236 |
| HpyF3I | CTNAG | 1 cut(s) | 308 |
| HpySE526I | ACGT | 2 cut(s) | 420, 695 |
| Hsp92I | GRCGYC | 1 cut(s) | 420 |
| Hsp92II | CATG | 4 cut(s) | 200, 765, 809, 889 |
| HspAI | GCGC | 1 cut(s) | 128 |
| Kzo9I | GATC | 2 cut(s) | 25, 295 |
| LmnI | GCTCC | 1 cut(s) | 695 |
| Lsp1109I | GCAGC | 4 cut(s) | 217, 281, 511, 533 |
| LweI | GCATC | 2 cut(s) | 126, 256 |
| MaeI | CTAG | 3 cut(s) | 159, 623, 722 |
| MaeII | ACGT | 2 cut(s) | 420, 695 |
| MaeIII | GTNAC | 4 cut(s) | 8, 312, 464, 611 |
| MalI | GATC | 2 cut(s) | 27, 297 |
| MboI | GATC | 2 cut(s) | 25, 295 |
| MboII | GAAGA | 3 cut(s) | 365, 604, 676 |
| MflI | RGATCY | 1 cut(s) | 295 |
| MluCI | AATT | 7 cut(s) | 221, 360, 503, 630, 829, 855, 859 |
| MnlI | CCTC | 9 cut(s) | 66, 213, 245, 303, 397, 454, 593, 645, 666 |
| MroXI | GAANNNNTTC | 1 cut(s) | 840 |
| MseI | TTAA | 5 cut(s) | 69, 618, 786, 858, 869 |
| MslI | CAYNNNNRTG | 2 cut(s) | 290, 338 |
| MspA1I | CMGCKG | 2 cut(s) | 272, 524 |
| MspCI | CTTAAG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 670, 736 |
| MspR9I | CCNGG | 3 cut(s) | 639, 736, 737 |
| MvaI | CCWGG | 1 cut(s) | 639 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 136, 187, 236 |
| NciI | CCSGG | 2 cut(s) | 736, 737 |
| NdeII | GATC | 2 cut(s) | 25, 295 |
| NlaIII | CATG | 4 cut(s) | 200, 765, 809, 889 |
| NlaIV | GGNNCC | 3 cut(s) | 170, 297, 691 |
| NmuCI | GTSAC | 1 cut(s) | 8 |
| NsbI | TGCGCA | 1 cut(s) | 129 |
| NspI | RCATGY | 2 cut(s) | 809, 889 |
| PciI | ACATGT | 1 cut(s) | 805 |
| PdmI | GAANNNNTTC | 1 cut(s) | 840 |
| PfeI | GAWTC | 2 cut(s) | 88, 185 |
| PfoI | TCCNGGA | 1 cut(s) | 637 |
| PkrI | GCNGC | 4 cut(s) | 232, 271, 523, 526 |
| PpuMI | RGGWCCY | 1 cut(s) | 602 |
| PscI | ACATGT | 1 cut(s) | 805 |
| PshBI | ATTAAT | 1 cut(s) | 858 |
| Psp5II | RGGWCCY | 1 cut(s) | 602 |
| Psp6I | CCWGG | 1 cut(s) | 637 |
| PspEI | GGTNACC | 1 cut(s) | 312 |
| PspGI | CCWGG | 1 cut(s) | 637 |
| PspN4I | GGNNCC | 3 cut(s) | 170, 297, 691 |
| PspPI | GGNCC | 4 cut(s) | 478, 602, 675, 814 |
| PspPPI | RGGWCCY | 1 cut(s) | 602 |
| PstNI | CAGNNNCTG | 1 cut(s) | 527 |
| PsuI | RGATCY | 1 cut(s) | 295 |
| PvuII | CAGCTG | 2 cut(s) | 272, 524 |
| RsaI | GTAC | 4 cut(s) | 276, 385, 715, 820 |
| RsaNI | GTAC | 4 cut(s) | 275, 384, 714, 819 |
| RseI | CAYNNNNRTG | 2 cut(s) | 290, 338 |
| SaqAI | TTAA | 5 cut(s) | 69, 618, 786, 858, 869 |
| SatI | GCNGC | 4 cut(s) | 231, 270, 522, 525 |
| Sau3AI | GATC | 2 cut(s) | 25, 295 |
| Sau96I | GGNCC | 4 cut(s) | 478, 602, 675, 814 |
| ScrFI | CCNGG | 3 cut(s) | 639, 736, 737 |
| SfaNI | GCATC | 2 cut(s) | 126, 256 |
| SinI | GGWCC | 3 cut(s) | 478, 602, 814 |
| SmaI | CCCGGG | 1 cut(s) | 737 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 290, 338 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 7 cut(s) | 221, 360, 503, 630, 829, 855, 859 |
| SsiI | CCGC | 1 cut(s) | 239 |
| SspI | AATATT | 1 cut(s) | 515 |
| SspMI | CTAG | 3 cut(s) | 159, 623, 722 |
| StyD4I | CCNGG | 3 cut(s) | 637, 734, 735 |
| TaaI | ACNGT | 4 cut(s) | 55, 125, 458, 848 |
| TaiI | ACGT | 2 cut(s) | 423, 698 |
| TaqI | TCGA | 1 cut(s) | 110 |
| TasI | AATT | 7 cut(s) | 221, 360, 503, 630, 829, 855, 859 |
| TatI | WGTACW | 1 cut(s) | 713 |
| TfiI | GAWTC | 2 cut(s) | 88, 185 |
| Tru1I | TTAA | 5 cut(s) | 69, 618, 786, 858, 869 |
| Tru9I | TTAA | 5 cut(s) | 69, 618, 786, 858, 869 |
| TscAI | CASTG | 2 cut(s) | 60, 463 |
| TseFI | GTSAC | 1 cut(s) | 8 |
| TseI | GCWGC | 4 cut(s) | 230, 269, 521, 524 |
| Tsp45I | GTSAC | 1 cut(s) | 8 |
| TspDTI | ATGAA | 3 cut(s) | 213, 500, 880 |
| TspGWI | ACGGA | 1 cut(s) | 806 |
| TspMI | CCCGGG | 1 cut(s) | 735 |
| TspRI | CASTG | 2 cut(s) | 60, 463 |
| Vha464I | CTTAAG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 3 cut(s) | 478, 602, 814 |
| VspI | ATTAAT | 1 cut(s) | 858 |
| XapI | RAATTY | 3 cut(s) | 503, 630, 829 |
| XceI | RCATGY | 2 cut(s) | 809, 889 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 377 |
| XmaI | CCCGGG | 1 cut(s) | 735 |
| XmiI | GTMKAC | 2 cut(s) | 392, 850 |
| XmnI | GAANNNNTTC | 1 cut(s) | 840 |
| XspI | CTAG | 3 cut(s) | 159, 623, 722 |
| ZraI | GACGTC | 1 cut(s) | 421 |