FvH4_1g23271

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000178
Physical Location & Seq
Reverse (-)
15141655 .. 15142141
487 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23271.t1

Sequence Viewer

Length: 408 bp
ATGCTTAATCAAACTGAGTTAATTGTTGTGCGTACCTCCTCTTTTACAGGTTTTATGCCGGACTACACAGTATGGCGAAAACATGGGGAGAATGAAGACACTGATGATGACGACATTAGTGATAGTCAGAATCATTGCGAGGAAGGTGAGGCTCCCCATTTTGATCAGTTTGATGATATACAACAACTTGTAGAAGAATTTATCGAAAAAGACTCGAATGGTGATGCGCAGAAGTTTTACAAGTTGTTGGATGAATCAAAAGTGCCATTGTATCCCGAGTGCAAGAAATATTCCAACTTGTCATTTGTTGTGAACTTGATGCACATCAAGAGTACTGGAAATATGAACAACGAAGCATTTGTCAAGTTACTTCAATTGTTGTCGGTGAGTTGTGGCTTGGTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

136

Amino Acids

15.45

Weight (kDa)

4.43

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 228
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 2 cut(s) 34, 334
AgsI TTSAA 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 275
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 3 cut(s) 158, 233, 397
AvaI CYCGRG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 163
BfuI GTATCC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 2 cut(s) 214, 309
BpiI GAAGAC 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 323
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 323
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 340
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 102
BsuI GTATCC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 33, 333
CviAII CATG 1 cut(s) 83
CviJI RGCY 2 cut(s) 152, 396
CviKI_1 RGCY 2 cut(s) 152, 396
CviQI GTAC 2 cut(s) 33, 333
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 275
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 56, 73, 84, 179, 344
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 163
FokI GGATG 1 cut(s) 263
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 1 cut(s) 228
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 3 cut(s) 130, 212, 254
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 158, 233, 397
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 275, 328
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 282, 322
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 33, 72, 321
LweI GCATC 2 cut(s) 214, 309
MaeIII GTNAC 1 cut(s) 366
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 107, 206
MfeI CAATTG 1 cut(s) 374
MluCI AATT 3 cut(s) 21, 197, 374
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 228, 318
MnlI CCTC 4 cut(s) 46, 49, 133, 142
MseI TTAA 3 cut(s) 6, 20, 406
MspI CCGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 374
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 153
NsbI TGCGCA 1 cut(s) 228
PfeI GAWTC 2 cut(s) 130, 254
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 153
RsaI GTAC 2 cut(s) 34, 334
RsaNI GTAC 2 cut(s) 33, 333
SaqAI TTAA 3 cut(s) 6, 20, 406
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 1 cut(s) 206
SetI ASST 3 cut(s) 38, 52, 148
SfaNI GCATC 2 cut(s) 214, 309
Sse9I AATT 3 cut(s) 21, 197, 374
SspI AATATT 1 cut(s) 290
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 204, 215
TasI AATT 3 cut(s) 21, 197, 374
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 2 cut(s) 130, 254
Tru1I TTAA 3 cut(s) 6, 20, 406
Tru9I TTAA 3 cut(s) 6, 20, 406
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 108, 267, 359
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.