RLG00000014199

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000178
Physical Location & Seq
Forward (+)
49170325 .. 49172185
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014199

Sequence Viewer

Length: 1041 bp
ATGCCGCAGCACCAAATGCAATCATCTACTCAAGAGCTTTTAAATCTTGCTAAGTCAGCGAGCAAGCCTACAACAACAGCATCCTCATTGCACTCATCAGTAGAGCAGATTCTCACTTCCAATCGTACTCAACCTGCAAAACATCTCTCTCAACCTCCAATTCAATCGTCACCACTTAAGCAAATGCTACGATCGTCTTCTGTTCAGGAAGGGTCAACTTCTATTCAACAAGAATCTGCTTCAACTATAAATGTCACAGAGGCTTCTCAAGTTCGTTCTTCACCGTCTGTGGATGAGGTCACTAACACTAGTGGTGGTGCAGTTAGCAAGAAAAAGTGGTCTGACATCTTAAGAGATGATGTTGCTTTGCTAATTCGCCATGTCCGTGAGAAATTCAATTTGAGCTATGAATCTCATGTGGATGAAGCAATTGAGAAACACATGATTAGATATTTTACCACATGGCGCTATAATTTGCATAAGAAGTTTCAGAAATATGAATCAGTAGAGGAAGCAATGGAGAATCAACCTGAAGATGTTGAAGAGGATGATTGGAACTACTTAATTGCAAATCTGTGGCAAGATCAAAACGAAAAAAGCAAGAAAAACAGGGACAAGTTAGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGTCTTAGAACTGAAAATAGGAAATTGGTTATTGACCTTTTCAAGCTCACACAATCCAGCGAAAAGAAATCTGCATGGGTTGGTGATACAGCAAAGAATGCTTTTGAAGAGATGAAAAATCTACAAAACGAGCCACAAATGAATGAAAAATCTGGTGAAATAATGTCTGAAGATGAGATCTATGATGAAGTGCTTTCCAAAATTGTTGGTCCACCACGATCAAGCTATATACGTGGCTTAGGAGCAGGCCCAAAGCCTAAAAGGTCTAAATTTTCTGCAAATGATGCTCAAGTGAGGGAGGCTAATCAAAGGGCAGATGAAGCGAAAAGAAGAGCAATGCAGCTTGCAGATGAATTGATGGCTGTAAAGTCTACTACAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

347

Amino Acids

39.21

Weight (kDa)

7.12

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 193 - 305 3.1e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 1028
AciI CCGC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 392, 926
AcuI CTGAAG 2 cut(s) 552, 846
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 1 cut(s) 127
AflII CTTAAG 2 cut(s) 176, 349
AgsI TTSAA 7 cut(s) 164, 227, 243, 397, 542, 700, 764
AhlI ACTAGT 1 cut(s) 308
AluBI AGCT 6 cut(s) 37, 405, 703, 882, 1000, 1037
AluI AGCT 6 cut(s) 37, 405, 703, 882, 1000, 1037
AoxI GGCC 1 cut(s) 904
ApeKI GCWGC 2 cut(s) 7, 997
ApoI RAATTY 2 cut(s) 392, 926
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 866, 905
AsuHPI GGTGA 4 cut(s) 162, 273, 752, 824
AvaII GGWCC 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 19, 1009
BccI CCATC 1 cut(s) 1009
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 1032
BfoI RGCGCY 1 cut(s) 469
BfrI CTTAAG 2 cut(s) 176, 349
BfuAI ACCTGC 1 cut(s) 142
BglII AGATCT 1 cut(s) 834
BisI GCNGC 3 cut(s) 5, 8, 998
BlsI GCNGC 3 cut(s) 6, 9, 999
Bme18I GGWCC 1 cut(s) 866
BmgT120I GGNCC 2 cut(s) 866, 905
BmsI GCATC 2 cut(s) 89, 931
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 895
BpuEI CTTGAG 3 cut(s) 15, 252, 930
BsaAI YACGTR 1 cut(s) 890
Bse3DI GCAATG 3 cut(s) 86, 522, 999
BseGI GGATG 4 cut(s) 80, 298, 427, 553
BseMI GCAATG 3 cut(s) 86, 522, 999
BseXI GCAGC 2 cut(s) 19, 1009
BsgI GTGCAG 2 cut(s) 339, 657
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 906
BsiEI CGRYCG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 626, 655
BsmFI GGGAC 2 cut(s) 626, 655
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 1 cut(s) 906
Bsp143I GATC 4 cut(s) 191, 583, 834, 875
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 906
BspMI ACCTGC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 982
BspTI CTTAAG 2 cut(s) 176, 349
BsrDI GCAATG 3 cut(s) 86, 522, 999
BssMI GATC 4 cut(s) 191, 583, 834, 875
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 3 cut(s) 537, 759, 982
BstAFI CTTAAG 2 cut(s) 176, 349
BstAPI GCANNNNNTGC 3 cut(s) 16, 755, 941
BstBAI YACGTR 1 cut(s) 890
BstC8I GCNNGC 4 cut(s) 61, 65, 904, 1002
BstDEI CTNAG 4 cut(s) 51, 662, 895, 1038
BstF5I GGATG 4 cut(s) 80, 298, 427, 553
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 4 cut(s) 194, 586, 837, 878
BstMBI GATC 4 cut(s) 191, 583, 834, 875
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 5 cut(s) 16, 56, 755, 941, 977
BstSFI CTRYAG 1 cut(s) 1032
BstV1I GCAGC 2 cut(s) 19, 1009
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
BsuRI GGCC 1 cut(s) 906
BtsCI GGATG 4 cut(s) 80, 298, 427, 553
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 4 cut(s) 61, 65, 904, 1002
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 866, 905
Csp6I GTAC 1 cut(s) 126
CviAII CATG 5 cut(s) 380, 416, 442, 462, 732
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 4 cut(s) 51, 662, 895, 1038
DpnI GATC 4 cut(s) 193, 585, 836, 877
DpnII GATC 4 cut(s) 191, 583, 834, 875
DraI TTTAAA 1 cut(s) 42
DraIII CACNNNGTG 1 cut(s) 635
Eam1104I CTCTTC 3 cut(s) 537, 759, 982
EarI CTCTTC 3 cut(s) 537, 759, 982
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 2 cut(s) 552, 846
FaeI CATG 5 cut(s) 383, 419, 445, 465, 735
FaqI GGGAC 2 cut(s) 626, 655
FatI CATG 5 cut(s) 379, 415, 441, 461, 731
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 3 cut(s) 5, 8, 998
FokI GGATG 4 cut(s) 67, 305, 434, 560
Fsp4HI GCNGC 3 cut(s) 5, 8, 998
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 5, 8, 998
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 1 cut(s) 906
HhaI GCGC 1 cut(s) 468
Hin1II CATG 5 cut(s) 383, 419, 445, 465, 735
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 5 cut(s) 109, 233, 410, 500, 523
HphI GGTGA 4 cut(s) 162, 273, 752, 824
Hpy166II GTNNAC 3 cut(s) 216, 869, 1029
Hpy188I TCNGA 3 cut(s) 343, 492, 826
Hpy188III TCNNGA 2 cut(s) 32, 206
Hpy8I GTNNAC 3 cut(s) 216, 869, 1029
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 889
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 56, 755, 941, 977
HpyF3I CTNAG 4 cut(s) 51, 662, 895, 1038
HpySE526I ACGT 1 cut(s) 889
Hsp92II CATG 5 cut(s) 383, 419, 445, 465, 735
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 4 cut(s) 191, 583, 834, 875
LguI GCTCTTC 1 cut(s) 982
LmnI GCTCC 1 cut(s) 899
LpnPI CCDG 8 cut(s) 147, 191, 543, 595, 624, 727, 795, 888
Lsp1109I GCAGC 2 cut(s) 19, 1009
LweI GCATC 2 cut(s) 89, 931
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 889
MaeIII GTNAC 3 cut(s) 168, 253, 298
MalI GATC 4 cut(s) 193, 585, 836, 877
MboI GATC 4 cut(s) 191, 583, 834, 875
MboII GAAGA 7 cut(s) 189, 270, 545, 554, 776, 839, 999
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 834
MnlI CCTC 8 cut(s) 94, 165, 253, 289, 502, 538, 945, 949
MseI TTAA 4 cut(s) 41, 177, 350, 563
MslI CAYNNNNRTG 2 cut(s) 384, 420
MspCI CTTAAG 2 cut(s) 176, 349
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 760
MwoI GCNNNNNNNGC 5 cut(s) 16, 56, 755, 941, 977
NdeII GATC 4 cut(s) 191, 583, 834, 875
NlaIII CATG 5 cut(s) 383, 419, 445, 465, 735
NmuCI GTSAC 3 cut(s) 168, 253, 298
PciSI GCTCTTC 1 cut(s) 982
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PctI GAATGC 1 cut(s) 760
PfeI GAWTC 5 cut(s) 109, 233, 410, 500, 523
PkrI GCNGC 3 cut(s) 6, 9, 999
Ple19I CGATCG 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 890
PspPI GGNCC 2 cut(s) 866, 905
PsuI RGATCY 1 cut(s) 834
PvuI CGATCG 1 cut(s) 194
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 2 cut(s) 384, 420
SapI GCTCTTC 1 cut(s) 982
SaqAI TTAA 4 cut(s) 41, 177, 350, 563
SatI GCNGC 3 cut(s) 5, 8, 998
Sau3AI GATC 4 cut(s) 191, 583, 834, 875
Sau96I GGNCC 2 cut(s) 866, 905
SfaNI GCATC 2 cut(s) 89, 931
SfcI CTRYAG 1 cut(s) 1032
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 2 cut(s) 384, 420
SmlI CTYRAG 5 cut(s) 30, 176, 267, 349, 945
SmoI CTYRAG 5 cut(s) 30, 176, 267, 349, 945
SpeI ACTAGT 1 cut(s) 308
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 892
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 5 cut(s) 109, 233, 410, 500, 523
Tru1I TTAA 4 cut(s) 41, 177, 350, 563
Tru9I TTAA 4 cut(s) 41, 177, 350, 563
TseFI GTSAC 3 cut(s) 168, 253, 298
TseI GCWGC 2 cut(s) 7, 997
Tsp45I GTSAC 3 cut(s) 168, 253, 298
TspDTI ATGAA 9 cut(s) 423, 438, 513, 785, 812, 816, 858, 990, 1023
TspGWI ACGGA 1 cut(s) 374
Vha464I CTTAAG 2 cut(s) 176, 349
VpaK11BI GGWCC 1 cut(s) 866
XapI RAATTY 2 cut(s) 392, 926
XmiI GTMKAC 1 cut(s) 1028
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.