RLG00000012400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000178
Physical Location & Seq
Forward (+)
18352090 .. 18355657
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012400

Sequence Viewer

Length: 528 bp
ATGGTGATGGATAAGAGTTGGATTCAACTAGCCACTAGGGGGAAGCCAGAATATATTAAGGGTGTGAAAGAATTCATTGATTTTGCTGCTGCCCACATGAAGTCAGGGTCCAACCTAATCCAATGTCCGTGTTTAAATTCTAACAATTTTTGTTCTAGACCTCTAGGCCAAGTTGAAGATCATTTATATTCGTATGGAATGGTTATGCATTACATTAAGTGGACAAAACATGGGGAAGAAGAGTCTGATGATGAATTGGAAAATGATGACATAATAGAAGAGGACAATGGACAGGATGTTGAGGAAGATGTTGATGATGTAGTTGAAATGATACATGAATATCAGGCTGGTGCTTTTGCTGATGACGGGGTGTCTCAAGAGCATTCTCATACAGTGCTGGCAGAGGATCCCTATCAACAAGAGTCGCATGATTTTGTCAATCCTATTGAGGTTAATGATGGCAACGTGTCATTAAGTAGGGATGACATGGAAATGATTGTTGTGGATTTGAGTGCCAAAAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

176

Amino Acids

19.91

Weight (kDa)

4.27

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 5 - 79 1.7e-19 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 401, 414
AcsI RAATTY 2 cut(s) 71, 136
AfiI CCNNNNNNNGG 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 26, 176, 326
AhdI GACNNNNNGTC 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 2 cut(s) 401, 414
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 86, 89
ApoI RAATTY 2 cut(s) 71, 136
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 73, 76
BccI CCATC 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 4 cut(s) 29, 36, 156, 164
BisI GCNGC 2 cut(s) 87, 90
BlsI GCNGC 2 cut(s) 88, 91
Bme18I GGWCC 1 cut(s) 108
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 109, 408
BpuEI CTTGAG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 411
BseGI GGATG 2 cut(s) 301, 487
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 73, 76
BshFI GGCC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 178, 406
BspANI GGCC 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 109, 408
BspPI GGATC 2 cut(s) 401, 414
BssMI GATC 2 cut(s) 178, 406
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 2 cut(s) 234, 273
BstC8I GCNNGC 1 cut(s) 399
BstF5I GGATG 2 cut(s) 301, 487
BstKTI GATC 2 cut(s) 181, 409
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 178, 406
BstV1I GCAGC 2 cut(s) 73, 76
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 301, 487
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 5 cut(s) 97, 230, 335, 428, 487
CviJI RGCY 4 cut(s) 32, 46, 168, 347
CviKI_1 RGCY 4 cut(s) 32, 46, 168, 347
DpnI GATC 2 cut(s) 180, 408
DpnII GATC 2 cut(s) 178, 406
DraI TTTAAA 1 cut(s) 135
DriI GACNNNNNGTC 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 234, 273
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 2 cut(s) 234, 273
Eco47I GGWCC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 210
FaeI CATG 5 cut(s) 100, 233, 338, 431, 490
FatI CATG 5 cut(s) 96, 229, 334, 427, 486
Fnu4HI GCNGC 2 cut(s) 87, 90
FokI GGATG 2 cut(s) 308, 494
Fsp4HI GCNGC 2 cut(s) 87, 90
FspBI CTAG 4 cut(s) 29, 36, 156, 164
GluI GCNGC 2 cut(s) 87, 90
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 5 cut(s) 100, 233, 338, 431, 490
HinfI GANTC 3 cut(s) 22, 242, 422
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 156, 377
Hpy8I GTNNAC 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 5 cut(s) 100, 233, 338, 431, 490
Kzo9I GATC 2 cut(s) 178, 406
LpnPI CCDG 6 cut(s) 60, 90, 278, 329, 333, 383
Lsp1109I GCAGC 2 cut(s) 73, 76
MaeI CTAG 4 cut(s) 29, 36, 156, 164
MaeII ACGT 1 cut(s) 465
MalI GATC 2 cut(s) 180, 408
MboI GATC 2 cut(s) 178, 406
MboII GAAGA 5 cut(s) 188, 248, 251, 290, 317
MflI RGATCY 1 cut(s) 406
MluCI AATT 4 cut(s) 71, 136, 145, 254
MlyI GAGTC 2 cut(s) 251, 431
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 171, 274, 295, 397, 442
Mph1103I ATGCAT 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 5 cut(s) 57, 134, 216, 453, 473
MslI CAYNNNNRTG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 382
NdeII GATC 2 cut(s) 178, 406
NlaIII CATG 5 cut(s) 100, 233, 338, 431, 490
NlaIV GGNNCC 2 cut(s) 109, 408
NsiI ATGCAT 1 cut(s) 210
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 88, 91
PleI GAGTC 2 cut(s) 250, 430
PpsI GAGTC 2 cut(s) 250, 430
PspN4I GGNNCC 2 cut(s) 109, 408
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 5 cut(s) 57, 134, 216, 453, 473
SatI GCNGC 2 cut(s) 87, 90
Sau3AI GATC 2 cut(s) 178, 406
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 2 cut(s) 251, 431
SetI ASST 4 cut(s) 117, 163, 453, 468
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
Sse9I AATT 4 cut(s) 71, 136, 145, 254
SspMI CTAG 4 cut(s) 29, 36, 156, 164
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 468
TasI AATT 4 cut(s) 71, 136, 145, 254
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 5 cut(s) 57, 134, 216, 453, 473
Tru9I TTAA 5 cut(s) 57, 134, 216, 453, 473
TscAI CASTG 1 cut(s) 399
TseI GCWGC 2 cut(s) 86, 89
TspDTI ATGAA 4 cut(s) 64, 113, 267, 351
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 2 cut(s) 71, 136
XbaI TCTAGA 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 4 cut(s) 29, 36, 156, 164
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.