FvH4_3g31043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000178
Physical Location & Seq
Forward (+)
24739200 .. 24741182
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31043.t1

Sequence Viewer

Length: 726 bp
ATGGGGATAGCCAAGAAGAAACGTTCTAGTAATCCGATAGAGATTGATATCCCAGAGCATTTGAAACGAGCCATAGGAGAGAATTGCCAATCTTACACCACAGAGATAGGTTGCATTGTTAGGCAAAATGCCCCATTACAAGTTAAGTACTGGAGTGAGATTAAAAGGGATGATGTTGATGCGCTAGTTCGTCTTGTCCGTAAAAATCCTGAGACTGGAGAGGAACCTAGCCGTATTGACATGTTCAAGCTGACAAGATTTAGAGAAAACAAGAAAACATGGGTTGGGGATGTTGCGGAAAATGCTTATGGTGACATGACAATGCTAAAAACTCCTGAGCAAACAAATGAAGAACCAGAGAAAGCAATGTCTGATGATGTGATTTATGATACAGTTCTCACCAAAATTATTGGTCCACCTCGGTCAGGATACATACGTGGGTTAGGAGCAGGCCCTAAACCTAAAAAATCAAAAGTAGCTTCAAACAGTCATTCACAACTTCAAGAGGCTACACGGAGGGCAGATGAGGCAGAGAGACGATCCACCCAACTAGCAGAGGAGTTAGAGGCGATGAAGGCTAGTGCAACTCAACAAAATGAAGAACTAGAGGCAATGAAGGCCAATGCAGCTCAACAAAGTGAAGAGTTGGAGGCAGTTAAAGCAAAACAAACCAAGACGGATACATTTATAAGAAGACTACTGGAACAGCTATCCTCTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.24

Weight (kDa)

8.38

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AciI CCGC 1 cut(s) 296
AclI AACGTT 1 cut(s) 22
AclWI GGATC 1 cut(s) 534
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 215, 425
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 4 cut(s) 64, 247, 483, 503
AluBI AGCT 4 cut(s) 250, 479, 629, 709
AluI AGCT 4 cut(s) 250, 479, 629, 709
Alw26I GTCTC 2 cut(s) 206, 529
AlwI GGATC 1 cut(s) 534
AoxI GGCC 2 cut(s) 451, 618
ApeKI GCWGC 1 cut(s) 626
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 413, 452
AsuHPI GGTGA 2 cut(s) 323, 391
AvaII GGWCC 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BbsI GAAGAC 1 cut(s) 700
BbvI GCAGC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 216
BciVI GTATCC 2 cut(s) 422, 673
BcoDI GTCTC 2 cut(s) 206, 529
BfaI CTAG 7 cut(s) 27, 185, 228, 551, 579, 605, 717
BfuI GTATCC 2 cut(s) 422, 673
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
BmcAI AGTACT 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 413, 452
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 700
BpmI CTGGAG 2 cut(s) 172, 237
Bpu10I CCTNAGC 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 437
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 425
Bse1I ACTGG 3 cut(s) 155, 220, 705
Bse3DI GCAATG 2 cut(s) 372, 618
Bse8I GATNNNNATC 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 2 cut(s) 175, 295
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 215, 425
BseMI GCAATG 2 cut(s) 372, 618
BseMII CTCAG 2 cut(s) 201, 327
BseNI ACTGG 3 cut(s) 155, 220, 705
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 638
BshFI GGCC 2 cut(s) 453, 620
BslI CCNNNNNNNGG 2 cut(s) 215, 425
BsmAI GTCTC 2 cut(s) 206, 529
BsmBI CGTCTC 1 cut(s) 529
BsnI GGCC 2 cut(s) 453, 620
Bsp143I GATC 1 cut(s) 539
BspACI CCGC 1 cut(s) 296
BspANI GGCC 2 cut(s) 453, 620
BspCNI CTCAG 2 cut(s) 202, 328
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 1 cut(s) 534
BsrDI GCAATG 2 cut(s) 372, 618
BsrI ACTGG 3 cut(s) 155, 220, 705
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 394, 488
Bst6I CTCTTC 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 210, 336
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 175, 295
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 542
BstMAI GTCTC 2 cut(s) 206, 529
BstMBI GATC 1 cut(s) 539
BstMWI GCNNNNNNNGC 6 cut(s) 302, 527, 575, 617, 626, 659
BstNSI RCATGY 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 638
BstV2I GAAGAC 1 cut(s) 700
BsuI GTATCC 2 cut(s) 422, 673
BsuRI GGCC 2 cut(s) 453, 620
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 2 cut(s) 175, 295
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 413, 452
Csp6I GTAC 1 cut(s) 148
CviAII CATG 3 cut(s) 241, 279, 316
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 210, 336
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 452
EcoRV GATATC 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 529
FaeI CATG 3 cut(s) 244, 282, 319
FaiI YATR 8 cut(s) 74, 242, 280, 309, 317, 387, 434, 689
FatI CATG 3 cut(s) 240, 278, 315
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 2 cut(s) 182, 302
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 7 cut(s) 27, 185, 228, 551, 579, 605, 717
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 627
GsuI CTGGAG 2 cut(s) 172, 237
HaeIII GGCC 2 cut(s) 453, 620
HhaI GCGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 244, 282, 319
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HphI GGTGA 2 cut(s) 323, 391
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 36, 373
Hpy188III TCNNGA 4 cut(s) 209, 335, 426, 503
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 568, 610
HpyCH4III ACNGT 2 cut(s) 394, 488
HpyCH4IV ACGT 2 cut(s) 22, 436
HpyCH4V TGCA 3 cut(s) 114, 584, 626
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 527, 575, 617, 626, 659
HpyF3I CTNAG 2 cut(s) 210, 336
HpySE526I ACGT 2 cut(s) 22, 436
Hsp92II CATG 3 cut(s) 244, 282, 319
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 539
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 9 cut(s) 66, 136, 201, 222, 348, 369, 411, 435, 686
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 1 cut(s) 169
MaeI CTAG 7 cut(s) 27, 185, 228, 551, 579, 605, 717
MaeII ACGT 2 cut(s) 22, 436
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 5 cut(s) 28, 362, 611, 653, 705
MluCI AATT 2 cut(s) 82, 405
MmeI TCCRAC 1 cut(s) 627
MseI TTAA 3 cut(s) 144, 162, 657
MslI CAYNNNNRTG 1 cut(s) 320
MwoI GCNNNNNNNGC 6 cut(s) 302, 527, 575, 617, 626, 659
NdeII GATC 1 cut(s) 539
NlaIII CATG 3 cut(s) 244, 282, 319
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PkrI GCNGC 1 cut(s) 628
Ppu21I YACGTR 1 cut(s) 437
PscI ACATGT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 689
Psp1406I AACGTT 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 2 cut(s) 413, 452
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 3 cut(s) 144, 162, 657
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 1 cut(s) 539
Sau96I GGNCC 2 cut(s) 413, 452
ScaI AGTACT 1 cut(s) 149
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 2 cut(s) 82, 405
SsiI CCGC 1 cut(s) 296
SspMI CTAG 7 cut(s) 27, 185, 228, 551, 579, 605, 717
TaaI ACNGT 2 cut(s) 394, 488
TaiI ACGT 2 cut(s) 25, 439
TaqII GACCGA 1 cut(s) 411
TasI AATT 2 cut(s) 82, 405
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 3 cut(s) 144, 162, 657
Tru9I TTAA 3 cut(s) 144, 162, 657
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 4 cut(s) 363, 587, 612, 629
TspGWI ACGGA 3 cut(s) 188, 529, 692
VpaK11BI GGWCC 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 423
XceI RCATGY 1 cut(s) 244
XspI CTAG 7 cut(s) 27, 185, 228, 551, 579, 605, 717
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.