Rroxscaffold_1G00050560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000178
Physical Location & Seq
Forward (+)
71065428 .. 71072267
6840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050560.1

Sequence Viewer

Length: 354 bp
ATGAAAGAGGCGGAACTGGAAAGGATGGAAAAAGAGAACAAAATCTGGACCCCATCGCGTTCTTCCCTCGGCAACGACTCCGACTCCGACTCCGTCAGATTGAATCTCCACAAGGAGATTGAAGATCCATATCAGCAAGAGTCACATGAGTATGTCAATTTAGATGAAATTGACATTGGGGAGACTTCAATGTATAGAAATGACAGTGAAATGATCATTGTTGATTTGAATGCTGACAAGCAAGGGATTAGTGATTCTACATTCATCAATGATAGCGATGCAGAAGATGGTGACTTTGGTGATGAAGATAATGAGTTTATGTATTCTGATGATAACGAGGGCGACTATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.49

Weight (kDa)

4.05

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 58
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 119
AgsI TTSAA 4 cut(s) 103, 122, 189, 229
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 302, 311
AvaII GGWCC 1 cut(s) 48
BccI CCATC 3 cut(s) 19, 61, 281
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 50
BmsI GCATC 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 4 cut(s) 68, 74, 98, 104
Bse1I ACTGG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 129
BseNI ACTGG 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 124, 213
BspACI CCGC 1 cut(s) 11
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 124, 213
Bst4CI ACNGT 1 cut(s) 206
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 2 cut(s) 127, 216
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 124, 213
BstUI CGCG 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BtgZI GCGATG 2 cut(s) 39, 291
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 1 cut(s) 146
DpnI GATC 2 cut(s) 126, 215
DpnII GATC 2 cut(s) 124, 213
EciI GGCGGA 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 48
FaeI CATG 1 cut(s) 149
FaiI YATR 7 cut(s) 130, 147, 153, 195, 320, 348, 352
FatI CATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 213
FokI GGATG 1 cut(s) 37
Hin1II CATG 1 cut(s) 149
HinfI GANTC 6 cut(s) 77, 83, 89, 103, 140, 254
HphI GGTGA 2 cut(s) 302, 311
Hpy188I TCNGA 4 cut(s) 82, 88, 98, 328
Hpy188III TCNNGA 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 281
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 124, 213
LpnPI CCDG 2 cut(s) 2, 31
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 141, 290
MalI GATC 2 cut(s) 126, 215
MboI GATC 2 cut(s) 124, 213
MboII GAAGA 4 cut(s) 54, 134, 296, 317
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 157, 168
MlyI GAGTC 4 cut(s) 71, 77, 83, 149
MmeI TCCRAC 2 cut(s) 105, 111
MnlI CCTC 2 cut(s) 77, 331
MslI CAYNNNNRTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 235
MvnI CGCG 1 cut(s) 58
NdeII GATC 2 cut(s) 124, 213
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 50
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 141, 290
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 103, 254
PflFI GACNNNGTC 1 cut(s) 92
PleI GAGTC 4 cut(s) 71, 77, 83, 148
PpsI GAGTC 4 cut(s) 71, 77, 83, 148
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 150
Sau3AI GATC 2 cut(s) 124, 213
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 4 cut(s) 71, 77, 83, 149
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 2 cut(s) 157, 168
SsiI CCGC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 206
TasI AATT 2 cut(s) 157, 168
TfiI GAWTC 2 cut(s) 103, 254
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 2 cut(s) 141, 290
Tsp45I GTSAC 2 cut(s) 141, 290
TspDTI ATGAA 4 cut(s) 17, 180, 253, 318
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.