RLG00000017792

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000178
Physical Location & Seq
Reverse (-)
21276098 .. 21277896
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017792

Sequence Viewer

Length: 960 bp
ATGCTACGATCATCTTCTGTTCGGGTTGGGTCAACTTCTATTCAACAAGAATCTGCTTCAACTGTAAATGTCACAGAGCCTTCTCAAGTTCGTTCTTCACCGTCTGTGGATGAGGTCACTAACACTAGTGGTGGTGCAGTTAGCAAGAAACATACCATGAGAGCTGTAGGAACAAACTGCCAATTTTACATTACTGGTATGGGATGCTTCGAGAAATTCAATTTGAGCCATGAATCTCATGTGGATGAGGCAATTGAGAAACACATGATCAGATATTTTACCACATGGTGCTATAATTTGCATAAGAAGTTTCAGAAATATGAATCAGTAGAGGAAGCAATGGAGAATCGACCTGAAGATGTTGAAGAGGATGATTGGAACTACTTAATTGCAAATCTGTGGCAAGATCAAAAGTGGCTGCGAAAAAATAAGAAAAATAGGGACAAGTTAGAGATAACACATTATGCAGGGACAAAGGCATTTAGTCGTCTTAGAACTGAAAATGAAGAGATGAAAAATCTACAAAACGAGCCACAAATGAATGAAAAATCTGGTGAAATAATGTCTGAAGATGAGATCTATGATGAAGTGCTTTCCAAAATTGTTGGTCCACCACGATCATGCTATATTCGTGGCTTGAGAGCATGCCCAAAGCCTAAAAGGTCTAAATTTTCTGCAAATGATGCTCAAGTGAGGGAGGCAAATCAAAGGGCAGATGAAGCGGAAAGAAGAGTAATGCAGCTTGCAGATGAATTGATGGCTGTAAAGTCTACTGCAGCTCAGCAAAATGAGGAGTTAGAGATGGTCAAAGCTGGTGCTGCTCAACAAAATGAAGAGTTAGAGGTCGTGAAGGTTAGAGCTGCTCAACAAAATGAAGAGTTAGAGGCATTAAAGGCAAGACAAAATCAGACTGACACACTTTTTCTCAAATTGATGGCGCAGATGTCCTCCCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

320

Amino Acids

36.6

Weight (kDa)

5.85

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 770
AciI CCGC 1 cut(s) 722
AcsI RAATTY 2 cut(s) 215, 668
AcuI CTGAAG 2 cut(s) 375, 588
AdeI CACNNNGTG 1 cut(s) 288
AgsI TTSAA 4 cut(s) 44, 60, 220, 365
AhlI ACTAGT 1 cut(s) 125
AluBI AGCT 5 cut(s) 164, 742, 779, 812, 860
AluI AGCT 5 cut(s) 164, 742, 779, 812, 860
ApeKI GCWGC 5 cut(s) 418, 739, 776, 818, 860
ApoI RAATTY 2 cut(s) 215, 668
AspLEI GCGC 1 cut(s) 940
AspS9I GGNCC 1 cut(s) 608
AsuHPI GGTGA 2 cut(s) 90, 566
AvaII GGWCC 1 cut(s) 608
BbvI GCAGC 5 cut(s) 405, 751, 788, 805, 847
BccI CCATC 3 cut(s) 751, 796, 928
BclI TGATCA 1 cut(s) 267
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 165, 774
BglII AGATCT 1 cut(s) 576
BisI GCNGC 5 cut(s) 419, 740, 777, 819, 861
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 5 cut(s) 420, 741, 778, 820, 862
Bme18I GGWCC 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 608
BmsI GCATC 2 cut(s) 194, 673
Bpu1102I GCTNAGC 1 cut(s) 780
BpuEI CTTGAG 3 cut(s) 69, 658, 672
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 345
BseGI GGATG 4 cut(s) 115, 209, 250, 376
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 806
BseXI GCAGC 5 cut(s) 405, 751, 788, 805, 847
BsgI GTGCAG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 455, 484
BsmFI GGGAC 2 cut(s) 455, 484
Bsp143I GATC 5 cut(s) 8, 267, 406, 576, 617
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 1 cut(s) 722
BspCNI CTCAG 1 cut(s) 793
BspMAI CTGCAG 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 1 cut(s) 199
BssMI GATC 5 cut(s) 8, 267, 406, 576, 617
Bst4CI ACNGT 2 cut(s) 64, 102
Bst6I CTCTTC 5 cut(s) 360, 501, 724, 828, 870
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 646, 744
BstDEI CTNAG 2 cut(s) 491, 780
BstF5I GGATG 4 cut(s) 115, 209, 250, 376
BstHHI GCGC 1 cut(s) 940
BstKTI GATC 5 cut(s) 11, 270, 409, 579, 620
BstMBI GATC 5 cut(s) 8, 267, 406, 576, 617
BstMWI GCNNNNNNNGC 4 cut(s) 683, 719, 818, 893
BstNSI RCATGY 1 cut(s) 648
BstSFI CTRYAG 2 cut(s) 165, 774
BstV1I GCAGC 5 cut(s) 405, 751, 788, 805, 847
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BtsCI GGATG 4 cut(s) 115, 209, 250, 376
Cac8I GCNNGC 2 cut(s) 646, 744
CfoI GCGC 1 cut(s) 940
Cfr13I GGNCC 1 cut(s) 608
CviAII CATG 7 cut(s) 157, 230, 239, 265, 285, 621, 645
DdeI CTNAG 2 cut(s) 491, 780
DpnI GATC 5 cut(s) 10, 269, 408, 578, 619
DpnII GATC 5 cut(s) 8, 267, 406, 576, 617
DraIII CACNNNGTG 1 cut(s) 288
Eam1104I CTCTTC 5 cut(s) 360, 501, 724, 828, 870
EarI CTCTTC 5 cut(s) 360, 501, 724, 828, 870
Eco47I GGWCC 1 cut(s) 608
Eco57I CTGAAG 2 cut(s) 375, 588
FaeI CATG 7 cut(s) 160, 233, 242, 268, 288, 624, 648
FaqI GGGAC 2 cut(s) 455, 484
FatI CATG 7 cut(s) 156, 229, 238, 264, 284, 620, 644
FbaI TGATCA 1 cut(s) 267
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 5 cut(s) 419, 740, 777, 819, 861
FokI GGATG 4 cut(s) 122, 216, 257, 383
Fsp4HI GCNGC 5 cut(s) 419, 740, 777, 819, 861
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 939
GluI GCNGC 5 cut(s) 419, 740, 777, 819, 861
HhaI GCGC 1 cut(s) 940
Hin1II CATG 7 cut(s) 160, 233, 242, 268, 288, 624, 648
Hin6I GCGC 1 cut(s) 938
HinP1I GCGC 1 cut(s) 938
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 4 cut(s) 50, 233, 323, 346
HphI GGTGA 2 cut(s) 90, 566
Hpy166II GTNNAC 3 cut(s) 33, 611, 771
Hpy188I TCNGA 4 cut(s) 272, 315, 568, 909
Hpy188III TCNNGA 2 cut(s) 211, 847
Hpy8I GTNNAC 3 cut(s) 33, 611, 771
HpyAV CCTTC 2 cut(s) 90, 844
HpyCH4III ACNGT 2 cut(s) 64, 102
HpyCH4V TGCA 8 cut(s) 137, 301, 392, 467, 677, 739, 746, 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 683, 719, 818, 893
HpyF3I CTNAG 2 cut(s) 491, 780
Hsp92II CATG 7 cut(s) 160, 233, 242, 268, 288, 624, 648
HspAI GCGC 1 cut(s) 938
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 5 cut(s) 8, 267, 406, 576, 617
LpnPI CCDG 5 cut(s) 180, 366, 453, 537, 798
Lsp1109I GCAGC 5 cut(s) 405, 751, 788, 805, 847
LweI GCATC 2 cut(s) 194, 673
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 70, 115
MalI GATC 5 cut(s) 10, 269, 408, 578, 619
MboI GATC 5 cut(s) 8, 267, 406, 576, 617
MboII GAAGA 9 cut(s) 6, 87, 368, 377, 518, 581, 741, 845, 887
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 576
MseI TTAA 2 cut(s) 386, 890
MslI CAYNNNNRTG 2 cut(s) 243, 619
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 683, 719, 818, 893
NdeII GATC 5 cut(s) 8, 267, 406, 576, 617
NlaIII CATG 7 cut(s) 160, 233, 242, 268, 288, 624, 648
NmuCI GTSAC 2 cut(s) 70, 115
NspI RCATGY 1 cut(s) 648
PaeI GCATGC 1 cut(s) 648
PfeI GAWTC 4 cut(s) 50, 233, 323, 346
PkrI GCNGC 5 cut(s) 420, 741, 778, 820, 862
PspPI GGNCC 1 cut(s) 608
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 576
RseI CAYNNNNRTG 2 cut(s) 243, 619
SaqAI TTAA 2 cut(s) 386, 890
SatI GCNGC 5 cut(s) 419, 740, 777, 819, 861
Sau3AI GATC 5 cut(s) 8, 267, 406, 576, 617
Sau96I GGNCC 1 cut(s) 608
SfaNI GCATC 2 cut(s) 194, 673
SfcI CTRYAG 2 cut(s) 165, 774
SinI GGWCC 1 cut(s) 608
SmiMI CAYNNNNRTG 2 cut(s) 243, 619
SmlI CTYRAG 3 cut(s) 84, 637, 687
SmoI CTYRAG 3 cut(s) 84, 637, 687
SpeI ACTAGT 1 cut(s) 125
SphI GCATGC 1 cut(s) 648
SsiI CCGC 1 cut(s) 722
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 64, 102
TaqI TCGA 2 cut(s) 210, 349
TfiI GAWTC 4 cut(s) 50, 233, 323, 346
Tru1I TTAA 2 cut(s) 386, 890
Tru9I TTAA 2 cut(s) 386, 890
TseFI GTSAC 2 cut(s) 70, 115
TseI GCWGC 5 cut(s) 418, 739, 776, 818, 860
Tsp45I GTSAC 2 cut(s) 70, 115
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 2 cut(s) 215, 668
XceI RCATGY 1 cut(s) 648
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.