RLG00000033507

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000178
Physical Location & Seq
Forward (+)
28248780 .. 28251680
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033507

Sequence Viewer

Length: 1281 bp
ATGGCCAAGAGATCACAAGGTCCTAAATTTTTGCATCAATTGCGAACATCAGCACTTCCACCAAACCACTTGCGAACATCTGCTGAAAAGGTTTCTAGGCTTGTAAAGCCTTTAGATAAACCTATAGCACCTACATGTCCATTGCGATCATCAACTAAAAAGGTTTCTAAGGTTATAAAGCCTTTAGTTAAACCTACAGCACTTTCAAGCCCATTGCGATTATCTCCTATAAAGCATTCAAAGACACAGCCTTCCACAAATCGATCAATACATCCTCGTCGACCTGCTATCCAGTCATCAAGAACTCCATCTCCTCCTTCTTCCCCATATGTTATGAGATCATCTCCGCTTTCACCTTCACCTCCACATATGCGCATAGTCTTATCAACCTCTAATCAGCACACATCAACTCCAAGTGCACATGAAGAGATAGCTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGAAGAGAACATTGGTGGAGAGAATTGCCAGTCTTACATCACAGAGATAGGCTGCATTGTTAGGCAAAATGCTCCATTACAAGTTAAGCATTGGAGTGGAATTAACAAGGATGATGTTGCTACGATGGTTCTTCTTGTCCGTGAGAAATTCAAATTGGGGAATGAACCACACGTGAATGAGGCTATTGAGGCAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTGCATAAGACGTTTTTGCAATATGAATCAGCGGATGAGGCACTTGAGAACAGACCTGAAAATGAATTGAGCGGAAAAAATAAGAAAAATAGAGATAAGCTAACAATAACTCATTGTGCTGGGACAAAAGCATTTAGTCTCATTAGATATGAAAATCAAAATCCTGAGACCGGAGAGGAACCTAGCCGTATTGACATGTTCAAGCTGACAAGATTTAGGGAAAACAAGAAAAAATGGGTCGAAGATGTCGCTGAAAATGCTTATGGTGAGATGACAAAACTAAGAAATCCTGAGCAAACAGATGAAGGGTCAGAAAAAGTAATGTCTGATAATGAGATATATGATAAAGTTCTTTCCACAATTGAGGATACAACAAGGGCAGATGAGGCAGAAAGACTATCTACCCAACTTGCAGAGGAGTTAGAGGCAATGAAGGCTAGTGCAGCTCAACAAAATGAAGAATTAGAGGCAGTGAAGGCTAGTGCAGCTCAACAAAGTGAAGAGTTAGAGGCAGTTAAAGCAAAGCAAAACGAGATGGACACACTTTTAAAAAAATTGCTGGAACAATTTTCCTCTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

427

Amino Acids

48.02

Weight (kDa)

8.99

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 254 - 350 4.3e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
Acc16I TGCGCA 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 768
AccI GTMKAC 1 cut(s) 280
AciI CCGC 3 cut(s) 347, 728, 768
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 26, 614
AcvI CACGTG 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 866
AflIII ACRYGT 3 cut(s) 134, 637, 891
AgsI TTSAA 4 cut(s) 207, 240, 619, 898
AjuI GAANNNNNNNTTGG 4 cut(s) 462, 494, 605, 637
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 5 cut(s) 434, 796, 901, 1142, 1184
AluI AGCT 5 cut(s) 434, 796, 901, 1142, 1184
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 839, 857
Alw44I GTGCAC 1 cut(s) 417
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 3 cut(s) 519, 1139, 1181
ApoI RAATTY 2 cut(s) 26, 614
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 345, 351, 974
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 506, 1151, 1193
BccI CCATC 3 cut(s) 316, 586, 1225
BceAI ACGGC 1 cut(s) 867
BciVI GTATCC 1 cut(s) 1057
BcoDI GTCTC 2 cut(s) 839, 857
BfaI CTAG 5 cut(s) 96, 879, 1134, 1176, 1272
BfmI CTRYAG 2 cut(s) 123, 195
BfuAI ACCTGC 1 cut(s) 292
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 3 cut(s) 520, 1140, 1182
BlsI GCNGC 3 cut(s) 521, 1141, 1183
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 876
BmsI GCATC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 328, 360
Bpu10I CCTNAGC 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 429, 761
Bsa29I ATCGAT 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 640
BsaI GGTCTC 1 cut(s) 857
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 866
Bse1I ACTGG 2 cut(s) 292, 496
Bse3DI GCAATG 3 cut(s) 140, 212, 1131
BseCI ATCGAT 1 cut(s) 262
BseGI GGATG 4 cut(s) 271, 454, 583, 736
BseLI CCNNNNNNNGG 1 cut(s) 866
BseMI GCAATG 3 cut(s) 140, 212, 1131
BseMII CTCAG 2 cut(s) 852, 978
BseNI ACTGG 2 cut(s) 292, 496
BseRI GAGGAG 2 cut(s) 303, 1127
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 3 cut(s) 506, 1151, 1193
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 2 cut(s) 1158, 1200
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 867
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 1 cut(s) 866
BsmAI GTCTC 2 cut(s) 839, 857
BsmFI GGGAC 1 cut(s) 832
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 4 cut(s) 11, 146, 263, 338
BspACI CCGC 3 cut(s) 347, 728, 768
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 853, 979
BspDI ATCGAT 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 876
BspMI ACCTGC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 857
BsrBI CCGCTC 1 cut(s) 768
BsrDI GCAATG 3 cut(s) 140, 212, 1131
BsrI ACTGG 2 cut(s) 292, 496
BssMI GATC 4 cut(s) 11, 146, 263, 338
Bst6I CTCTTC 3 cut(s) 420, 465, 1191
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 640
BstDEI CTNAG 5 cut(s) 168, 466, 861, 977, 987
BstF5I GGATG 4 cut(s) 271, 454, 583, 736
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 4 cut(s) 14, 149, 266, 341
BstMAI GTCTC 2 cut(s) 839, 857
BstMBI GATC 4 cut(s) 11, 146, 263, 338
BstNSI RCATGY 2 cut(s) 138, 895
BstSFI CTRYAG 2 cut(s) 123, 195
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 506, 1151, 1193
Bsu15I ATCGAT 1 cut(s) 262
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 262
BtsCI GGATG 4 cut(s) 271, 454, 583, 736
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 1 cut(s) 1173
BveI ACCTGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 262
CviAII CATG 4 cut(s) 135, 422, 664, 892
DdeI CTNAG 5 cut(s) 168, 466, 861, 977, 987
DpnI GATC 4 cut(s) 13, 148, 265, 340
DpnII GATC 4 cut(s) 11, 146, 263, 338
DraI TTTAAA 1 cut(s) 1245
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 420, 465, 1191
EarI CTCTTC 3 cut(s) 420, 465, 1191
Eco31I GGTCTC 1 cut(s) 857
Eco47I GGWCC 1 cut(s) 20
Eco72I CACGTG 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 20
FaeI CATG 4 cut(s) 138, 425, 667, 895
FaqI GGGAC 1 cut(s) 832
FatI CATG 4 cut(s) 134, 421, 663, 891
FauNDI CATATG 2 cut(s) 328, 369
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 520, 1140, 1182
FokI GGATG 4 cut(s) 258, 441, 590, 743
Fsp4HI GCNGC 3 cut(s) 520, 1140, 1182
FspAI RTGCGCAY 1 cut(s) 374
FspBI CTAG 5 cut(s) 96, 879, 1134, 1176, 1272
FspI TGCGCA 1 cut(s) 374
GlaI GCGC 1 cut(s) 374
GluI GCNGC 3 cut(s) 520, 1140, 1182
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 867
HhaI GCGC 1 cut(s) 375
Hin1II CATG 4 cut(s) 138, 425, 667, 895
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 2 cut(s) 437, 722
HpaII CCGG 1 cut(s) 867
HphI GGTGA 3 cut(s) 345, 351, 974
Hpy166II GTNNAC 2 cut(s) 281, 419
Hpy188I TCNGA 2 cut(s) 1009, 1024
Hpy188III TCNNGA 3 cut(s) 300, 860, 986
Hpy8I GTNNAC 2 cut(s) 281, 419
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 6 cut(s) 261, 327, 366, 995, 1123, 1165
HpyCH4IV ACGT 2 cut(s) 639, 707
HpyCH4V TGCA 8 cut(s) 34, 419, 522, 700, 715, 1109, 1139, 1181
HpyF3I CTNAG 5 cut(s) 168, 466, 861, 977, 987
HpySE526I ACGT 2 cut(s) 639, 707
Hsp92II CATG 4 cut(s) 138, 425, 667, 895
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 11, 146, 263, 338
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 9 cut(s) 297, 305, 509, 765, 801, 873, 880, 999, 1241
Lsp1109I GCAGC 3 cut(s) 506, 1151, 1193
LweI GCATC 1 cut(s) 43
MaeI CTAG 5 cut(s) 96, 879, 1134, 1176, 1272
MaeII ACGT 2 cut(s) 639, 707
MalI GATC 4 cut(s) 13, 148, 265, 340
MbiI CCGCTC 1 cut(s) 768
MboI GATC 4 cut(s) 11, 146, 263, 338
MboII GAAGA 9 cut(s) 312, 432, 437, 482, 590, 684, 950, 1166, 1208
MfeI CAATTG 2 cut(s) 38, 1056
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 189, 552, 570, 1212, 1244
MslI CAYNNNNRTG 3 cut(s) 133, 561, 642
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 867
MunI CAATTG 2 cut(s) 38, 1056
Mva1269I GAATGC 1 cut(s) 235
NdeI CATATG 2 cut(s) 328, 369
NdeII GATC 4 cut(s) 11, 146, 263, 338
NlaIII CATG 4 cut(s) 138, 425, 667, 895
NlaIV GGNNCC 1 cut(s) 876
NsbI TGCGCA 1 cut(s) 374
NspI RCATGY 2 cut(s) 138, 895
PciI ACATGT 2 cut(s) 134, 891
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 437, 722
PkrI GCNGC 3 cut(s) 521, 1141, 1183
PmaCI CACGTG 1 cut(s) 640
PmlI CACGTG 1 cut(s) 640
Ppu21I YACGTR 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 20
PscI ACATGT 2 cut(s) 134, 891
PsiI TTATAA 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 20
PspCI CACGTG 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 815
PspN4I GGNNCC 1 cut(s) 876
PspPI GGNCC 1 cut(s) 20
PspPPI RGGWCCY 1 cut(s) 20
RseI CAYNNNNRTG 3 cut(s) 133, 561, 642
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 5 cut(s) 189, 552, 570, 1212, 1244
SatI GCNGC 3 cut(s) 520, 1140, 1182
Sau3AI GATC 4 cut(s) 11, 146, 263, 338
Sau96I GGNCC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 2 cut(s) 123, 195
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 3 cut(s) 133, 561, 642
SmlI CTYRAG 2 cut(s) 444, 740
SmoI CTYRAG 2 cut(s) 444, 740
SsiI CCGC 3 cut(s) 347, 728, 768
SspMI CTAG 5 cut(s) 96, 879, 1134, 1176, 1272
TaiI ACGT 2 cut(s) 642, 710
TaqI TCGA 3 cut(s) 262, 280, 936
TfiI GAWTC 2 cut(s) 437, 722
Tru1I TTAA 5 cut(s) 189, 552, 570, 1212, 1244
Tru9I TTAA 5 cut(s) 189, 552, 570, 1212, 1244
TscAI CASTG 1 cut(s) 1173
TseI GCWGC 3 cut(s) 519, 1139, 1181
TspDTI ATGAA 9 cut(s) 438, 645, 680, 735, 774, 861, 1014, 1142, 1167
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 1 cut(s) 1173
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 2 cut(s) 26, 614
XceI RCATGY 2 cut(s) 138, 895
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 5 cut(s) 96, 879, 1134, 1176, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.