Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000178

Physical Location & Seq

Genomic Coordinates Forward (+)

29730130 .. 29730923

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G021830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGCAGAGTGGGAATGAGAGGCTGCCTGGTGCTGTTGTGCCTGCTAGGGAGAGGCTACTTGAGAGGTTGAGAGGAATGTCTCATTCGGAAACCAGTTATATGAATATGATCCAAGTAAGATCAGTGGATTTGCTGGATATCTGTGGCAACTGTCCCGCACTGCAGCCTTCTTTGTTAAGTAGATCAGGCCCAAAGGATGATCAAGGAGTTACAGAGTTTCTTGATTATGCATATAGCAATGATAAATGGGTAGAGGATGACATGATAAAATGTCCATGCAAAGACAATATTGCAACAAGTTCAAGTGCACACCATGATGAAGATGGTACTGAAGATTCATCAGCAACGATGCAAACTCTAATGAGGACTTTTATTAGATATAGCTTCCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

132

Amino Acids

14.78

Weight (kDa)

4.82

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40087 AT3G30200
fragaria_vesca	FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica	MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica	Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis	pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis	RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata	RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora	Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa	Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha	Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana	Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	87
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	1 cut(s)	190
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	4, 25, 166
AspS9I	GGNCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	12, 178
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	2 cut(s)	5, 164
BisI	GCNGC	3 cut(s)	5, 26, 167
BlsI	GCNGC	3 cut(s)	6, 27, 168
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	205, 265
BseMI	GCAATG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	12, 178
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	111, 122, 185, 202
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	192
BspMAI	CTGCAG	2 cut(s)	9, 168
BspPI	GGATC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	111, 122, 185, 202
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	205, 265
BstKTI	GATC	4 cut(s)	114, 125, 188, 205
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	4 cut(s)	111, 122, 185, 202
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	2 cut(s)	5, 164
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	12, 178
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	205, 265
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	132, 161
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	3 cut(s)	265, 279, 317
CviJI	RGCY	5 cut(s)	25, 58, 169, 192, 387
CviKI_1	RGCY	5 cut(s)	25, 58, 169, 192, 387
CviQI	GTAC	1 cut(s)	330
DpnI	GATC	4 cut(s)	113, 124, 187, 204
DpnII	GATC	4 cut(s)	111, 122, 185, 202
Eco32I	GATATC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	3 cut(s)	268, 282, 320
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	264, 278, 316
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	5, 26, 167
FokI	GGATG	2 cut(s)	212, 272
Fsp4HI	GCNGC	3 cut(s)	5, 26, 167
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	5, 26, 167
HaeIII	GGCC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	268, 282, 320
HinfI	GANTC	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	7, 166, 233, 282, 296, 311, 355
Hsp92II	CATG	3 cut(s)	268, 282, 320
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	111, 122, 185, 202
LpnPI	CCDG	6 cut(s)	15, 42, 57, 109, 122, 174
Lsp1109I	GCAGC	2 cut(s)	12, 178
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	113, 124, 187, 204
MboI	GATC	4 cut(s)	111, 122, 185, 202
MboII	GAAGA	2 cut(s)	335, 347
MhlI	GDGCHC	1 cut(s)	313
MnlI	CCTC	6 cut(s)	15, 48, 60, 68, 250, 360
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	2 cut(s)	179, 397
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	111, 122, 185, 202
NlaIII	CATG	3 cut(s)	268, 282, 320
NsiI	ATGCAT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	6, 27, 168
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	2 cut(s)	9, 168
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	179, 397
SatI	GCNGC	3 cut(s)	5, 26, 167
Sau3AI	GATC	4 cut(s)	111, 122, 185, 202
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	2 cut(s)	71, 389
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	5, 164
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SsiI	CCGC	1 cut(s)	159
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	179, 397
Tru9I	TTAA	2 cut(s)	179, 397
TscAI	CASTG	2 cut(s)	132, 168
TseI	GCWGC	3 cut(s)	4, 25, 166
TspDTI	ATGAA	3 cut(s)	119, 330, 336
TspRI	CASTG	2 cut(s)	132, 168
VneI	GTGCAC	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.