RLG00000008953

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000178
Physical Location & Seq
Forward (+)
43647811 .. 43651325
3515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008953

Sequence Viewer

Length: 465 bp
ATGGACAGAAGTTGGATGTTCTTACGAGATAGGTTTCACCACCCTGATTTCACCAACGGTTTGAAAACATTTTTGAGTGCTGCGGAACAACATTTGGATCATGAAAAAAAGACACGTTGCCCCTGTTTTAAATGTCAAAATGCATTGCCGCGTCTTACTTTACAAGAGATACGTAGGCATATATTGGTAAATGGGTTTGCACGACATTATACGACATGGACAGAGCATGGAGAAGATTATAGTGATGTGGCAAACGACCAAATGGATGTGGAAATTGAAACTGATAGCGAGGATGATGATGACAATACTTTGGTGTTTGACATGTTAAATGATGTTCAAGGGCCTACAAATATGGAGATGGATGATGAGGAGTTCAAGGAGAAGAATACCGAATCCAAAGACATCTCATCAAAGGACTGGAGCTCTGTGCCCTATGGTACCCCTCACTGCAGCGGTGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

155

Amino Acids

18.02

Weight (kDa)

4.63

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 78 1.4e-19 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 437
AccII CGCG 1 cut(s) 151
AciI CCGC 3 cut(s) 83, 149, 453
AclWI GGATC 1 cut(s) 105
AfaI GTAC 1 cut(s) 439
AflIII ACRYGT 3 cut(s) 113, 321, 459
AgsI TTSAA 4 cut(s) 64, 278, 338, 376
AluBI AGCT 1 cut(s) 423
AluI AGCT 1 cut(s) 423
Alw21I GWGCWC 1 cut(s) 425
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 80, 450
Asp718I GGTACC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 2 cut(s) 29, 43
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 448
BisI GCNGC 3 cut(s) 81, 149, 451
BlsI GCNGC 3 cut(s) 82, 150, 452
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 143
BseGI GGATG 4 cut(s) 21, 271, 298, 367
BseMI GCAATG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 425
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 425, 432
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 3 cut(s) 83, 149, 453
BspANI GGCC 1 cut(s) 343
BspFNI CGCG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 452
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 1 cut(s) 422
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 173
BstF5I GGATG 4 cut(s) 21, 271, 298, 367
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 325, 463
BstSFI CTRYAG 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 432
BstSNI TACGTA 1 cut(s) 173
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 4 cut(s) 21, 271, 298, 367
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 445
CciI TCATGA 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 438
CviAII CATG 5 cut(s) 101, 216, 227, 322, 460
CviJI RGCY 2 cut(s) 343, 423
CviKI_1 RGCY 2 cut(s) 343, 423
CviQI GTAC 1 cut(s) 438
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DraI TTTAAA 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 423
Eco105I TACGTA 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 5 cut(s) 104, 219, 230, 325, 463
FatI CATG 5 cut(s) 100, 215, 226, 321, 459
Fnu4HI GCNGC 3 cut(s) 81, 149, 451
FokI GGATG 4 cut(s) 28, 278, 305, 374
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 3 cut(s) 81, 149, 451
GluI GCNGC 3 cut(s) 81, 149, 451
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 1 cut(s) 343
HgaI GACGC 1 cut(s) 140
Hin1II CATG 5 cut(s) 104, 219, 230, 325, 463
HinfI GANTC 1 cut(s) 392
HphI GGTGA 2 cut(s) 29, 43
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 115, 172
HpyCH4V TGCA 3 cut(s) 143, 200, 450
HpySE526I ACGT 2 cut(s) 115, 172
Hsp92II CATG 5 cut(s) 104, 219, 230, 325, 463
KpnI GGTACC 1 cut(s) 441
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 420
LpnPI CCDG 3 cut(s) 57, 136, 403
Lsp1109I GCAGC 1 cut(s) 67
MaeII ACGT 2 cut(s) 115, 172
MaeIII GTNAC 1 cut(s) 455
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 245, 394
MhlI GDGCHC 2 cut(s) 425, 432
MluCI AATT 1 cut(s) 273
MnlI CCTC 3 cut(s) 283, 361, 453
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 2 cut(s) 129, 326
MspA1I CMGCKG 1 cut(s) 453
MvnI CGCG 1 cut(s) 151
NdeII GATC 1 cut(s) 97
NlaIII CATG 5 cut(s) 104, 219, 230, 325, 463
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 2 cut(s) 325, 463
PagI TCATGA 1 cut(s) 100
PciI ACATGT 2 cut(s) 321, 459
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 3 cut(s) 82, 150, 452
Ppu21I YACGTR 1 cut(s) 173
PscI ACATGT 2 cut(s) 321, 459
Psp124BI GAGCTC 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 452
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SacI GAGCTC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 129, 326
SatI GCNGC 3 cut(s) 81, 149, 451
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 341
SduI GDGCHC 2 cut(s) 425, 432
SetI ASST 4 cut(s) 35, 118, 175, 425
SfcI CTRYAG 1 cut(s) 448
SnaBI TACGTA 1 cut(s) 173
Sse9I AATT 1 cut(s) 273
SsiI CCGC 3 cut(s) 83, 149, 453
SstI GAGCTC 1 cut(s) 425
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 2 cut(s) 118, 175
TasI AATT 1 cut(s) 273
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 129, 326
Tru9I TTAA 2 cut(s) 129, 326
TscAI CASTG 1 cut(s) 452
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 2 cut(s) 80, 450
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 452
XceI RCATGY 2 cut(s) 325, 463
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.