Rmu_sc0015271.1_g000002

Domain of unknown function (DUF4218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015271.1
OG0000178
Physical Location & Seq
Forward (+)
8173 .. 10183
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015271.1_g000002.1.cds

Sequence Viewer

Length: 1560 bp
atggacactgagggcaagacaaaggactcttataagactcgccttgatatggaagaattgggcatcaaacctgagttacaccctcgagtagttgatggtcaaattaagctacccgcggcttgttacacttttaattcaaaagagaaaaaaggtgcatgtgggttcctccattcgatgacacttccagatggtatggcatctaatatctctagttgtgtaaacattaaagattcaaggatttttgggttaaagagtcatgattgccatataatcttgcaacgacttcttcctattgctttgcgtggatacttgtctaaggatgttcgtgatgtcatcattgaattatgtttgttcttcaaggagttgacttctaaaactttaaggattgatgtcctagagcagcttgataaagatattgtgttaatcctatgcaagctagagctttatcttccaccttcattctttaatattatgacccacttgccaattcacctagcccgtgaagctatacttgctggaccagtccaatttcgatggcaattcccatttgagaggaagatgcataattttaagggctatgttagaaacaaagctcgtcctgagggcttatctgttttcaagcaaaatgttaggctgtttacaggaggagttgatgatgtgcttagtccgacagactttgaaatgattaagtgggaacataaagaggagctacagaggcaagatattagaaatataagcaaggagcaagaaaaaacatttgccaaatggtttctccggcgggtccaacggatgcaccaagaagaaccaaacaaaaatattgaatccttattaaacttggctactggaccccagaagtcaattgctaaacatagtggctgtattattaatggaataaggtttcacactcgagatcgcgatgcaaacaaaaaaacccaaaatagtggggtagttgttaaaggagagcatcgtggtaagagtatcgatttctatggcgttttgatagacattattgagctatcatatcttggaagaaatcaagttgttgttttcaagtgcgattggttcgatctcactcaaaagaggggtatccaagttgatgaacatcaattcactagtatcaatatcagtaaaacatggtacacaaactatccattttctttggcatctcagacccaacaagtgtactatttacgagatactaggcttggtaataattggcgtgtcgtagagatatcacaacctcgagggaattatgatgttgtagaaaaagaagcagaagaaaatgaggtatgtgattcagcagtgctggtagaggatccctatcaacaagagttgcatgattttgtcaatcctattgaggttaatgatggctacgtgtcattaagtagggatgacatggaaatgattgttgtggatttgaatgccaaaagacaacgaagagaaaatgatagcttcattaatgatgatagtgacgctgaagatggtggctctagtgatgacaatgttgagggtgaatatgtctcatctgaggatgatattcatgatgcttatgttgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transposase_21

Protein Analysis

519

Amino Acids

59.92

Weight (kDa)

5.69

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AbsI CCTCGAGG 1 cut(s) 1242
AccII CGCG 2 cut(s) 116, 915
AciI CCGC 3 cut(s) 114, 116, 778
AclWI GGATC 2 cut(s) 1310, 1323
AcuI CTGAAG 1 cut(s) 1497
AfaI GTAC 2 cut(s) 1139, 1184
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 1374
AgsI TTSAA 9 cut(s) 138, 234, 341, 358, 619, 680, 821, 1051, 1420
AhlI ACTAGT 1 cut(s) 1112
AluBI AGCT 9 cut(s) 109, 403, 436, 442, 506, 593, 709, 1015, 1452
AluI AGCT 9 cut(s) 109, 403, 436, 442, 506, 593, 709, 1015, 1452
Alw26I GTCTC 1 cut(s) 1525
AlwI GGATC 2 cut(s) 1310, 1323
Ama87I CYCGRG 3 cut(s) 84, 906, 1242
ApeKI GCWGC 1 cut(s) 400
AseI ATTAAT 2 cut(s) 885, 1458
AspS9I GGNCC 3 cut(s) 518, 781, 845
AsuHPI GGTGA 2 cut(s) 482, 1523
AvaI CYCGRG 3 cut(s) 84, 906, 1242
AvaII GGWCC 3 cut(s) 518, 781, 845
AxyI CCTNAGG 1 cut(s) 600
BamHI GGATCC 1 cut(s) 1315
BbvI GCAGC 1 cut(s) 412
BccI CCATC 5 cut(s) 89, 182, 528, 1361, 1475
BciVI GTATCC 2 cut(s) 299, 1097
BcoDI GTCTC 1 cut(s) 1525
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 7 cut(s) 210, 395, 437, 494, 1113, 1200, 1491
BfmI CTRYAG 1 cut(s) 710
BfuI GTATCC 2 cut(s) 299, 1097
BisI GCNGC 2 cut(s) 117, 401
BlsI GCNGC 2 cut(s) 118, 402
Bme18I GGWCC 3 cut(s) 518, 781, 845
BmeT110I CYCGRG 3 cut(s) 84, 906, 1242
BmgT120I GGNCC 3 cut(s) 518, 781, 845
BmiI GGNNCC 4 cut(s) 164, 782, 847, 1317
BmsI GCATC 8 cut(s) 72, 206, 549, 780, 907, 973, 1172, 1534
Bsa29I ATCGAT 1 cut(s) 981
BsaAI YACGTR 1 cut(s) 1375
BsaBI GATNNNNATC 2 cut(s) 1101, 1320
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 521, 847
Bse21I CCTNAGG 1 cut(s) 600
Bse8I GATNNNNATC 2 cut(s) 1101, 1320
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 4 cut(s) 325, 795, 1396, 1537
BseJI GATNNNNATC 2 cut(s) 1101, 1320
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 4 cut(s) 63, 591, 1181, 1518
BseNI ACTGG 2 cut(s) 521, 847
BseRI GAGGAG 2 cut(s) 660, 719
BseXI GCAGC 1 cut(s) 412
Bsh1236I CGCG 2 cut(s) 116, 915
BshVI ATCGAT 1 cut(s) 981
BsiHKCI CYCGRG 3 cut(s) 84, 906, 1242
BsiSI CCGG 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 1525
BsmI GAATGC 1 cut(s) 1426
BsoBI CYCGRG 3 cut(s) 84, 906, 1242
Bsp143I GATC 3 cut(s) 910, 1066, 1315
Bsp68I TCGCGA 1 cut(s) 915
BspACI CCGC 3 cut(s) 114, 116, 778
BspCNI CTCAG 4 cut(s) 64, 592, 1180, 1519
BspDI ATCGAT 1 cut(s) 981
BspFNI CGCG 2 cut(s) 116, 915
BspHI TCATGA 2 cut(s) 256, 1540
BspLI GGNNCC 4 cut(s) 164, 782, 847, 1317
BspPI GGATC 2 cut(s) 1310, 1323
BsrI ACTGG 2 cut(s) 521, 847
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 910, 1066, 1315
Bst6I CTCTTC 1 cut(s) 1432
BstBAI YACGTR 1 cut(s) 1375
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 7 cut(s) 9, 72, 315, 600, 662, 1167, 1527
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 4 cut(s) 325, 795, 1396, 1537
BstFNI CGCG 2 cut(s) 116, 915
BstKTI GATC 3 cut(s) 913, 1069, 1318
BstMAI GTCTC 1 cut(s) 1525
BstMBI GATC 3 cut(s) 910, 1066, 1315
BstMWI GCNNNNNNNGC 3 cut(s) 503, 512, 715
BstNSI RCATGY 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 710
BstUI CGCG 2 cut(s) 116, 915
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 1315
BstXI CCANNNNNNTGG 1 cut(s) 941
BstYI RGATCY 1 cut(s) 1315
Bsu15I ATCGAT 1 cut(s) 981
Bsu36I CCTNAGG 1 cut(s) 600
BsuI GTATCC 2 cut(s) 299, 1097
BsuTUI ATCGAT 1 cut(s) 981
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 930
BtsCI GGATG 4 cut(s) 325, 795, 1396, 1537
BtsI GCAGTG 1 cut(s) 1308
BtsIMutI CAGTG 2 cut(s) 6, 1308
BtuMI TCGCGA 1 cut(s) 915
Cac8I GCNNGC 1 cut(s) 434
CciI TCATGA 2 cut(s) 256, 1540
Cfr13I GGNCC 3 cut(s) 518, 781, 845
Cfr42I CCGCGG 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 981
CseI GACGC 1 cut(s) 1481
Csp6I GTAC 2 cut(s) 1138, 1183
CviAII CATG 6 cut(s) 156, 257, 1134, 1337, 1396, 1541
CviQI GTAC 2 cut(s) 1138, 1183
DdeI CTNAG 7 cut(s) 9, 72, 315, 600, 662, 1167, 1527
DpnI GATC 3 cut(s) 912, 1068, 1317
DpnII GATC 3 cut(s) 910, 1066, 1315
Eam1104I CTCTTC 1 cut(s) 1432
EarI CTCTTC 1 cut(s) 1432
Eco32I GATATC 1 cut(s) 1233
Eco47I GGWCC 3 cut(s) 518, 781, 845
Eco57I CTGAAG 1 cut(s) 1497
Eco81I CCTNAGG 1 cut(s) 600
Eco88I CYCGRG 3 cut(s) 84, 906, 1242
EcoRV GATATC 1 cut(s) 1233
EcoT22I ATGCAT 1 cut(s) 564
FaeI CATG 6 cut(s) 159, 260, 1137, 1340, 1399, 1544
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 6 cut(s) 155, 256, 1133, 1336, 1395, 1540
FauI CCCGC 2 cut(s) 121, 771
Fnu4HI GCNGC 2 cut(s) 117, 401
FokI GGATG 4 cut(s) 332, 802, 1403, 1544
Fsp4HI GCNGC 2 cut(s) 117, 401
FspBI CTAG 7 cut(s) 210, 395, 437, 494, 1113, 1200, 1491
GluI GCNGC 2 cut(s) 117, 401
HapII CCGG 1 cut(s) 775
HgaI GACGC 1 cut(s) 1481
Hin1II CATG 6 cut(s) 159, 260, 1137, 1340, 1399, 1544
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 6 cut(s) 26, 37, 230, 253, 821, 1295
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 482, 1523
Hpy166II GTNNAC 5 cut(s) 220, 366, 639, 1140, 1183
Hpy188I TCNGA 3 cut(s) 669, 1170, 1528
Hpy188III TCNNGA 7 cut(s) 185, 257, 326, 599, 908, 914, 1541
Hpy8I GTNNAC 5 cut(s) 220, 366, 639, 1140, 1183
HpyAV CCTTC 1 cut(s) 465
HpyCH4IV ACGT 1 cut(s) 1374
HpyCH4V TGCA 7 cut(s) 155, 277, 432, 562, 793, 920, 1336
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 512, 715
HpyF3I CTNAG 7 cut(s) 9, 72, 315, 600, 662, 1167, 1527
HpySE526I ACGT 1 cut(s) 1374
Hsp92II CATG 6 cut(s) 159, 260, 1137, 1340, 1399, 1544
KspI CCGCGG 1 cut(s) 117
Kzo9I GATC 3 cut(s) 910, 1066, 1315
LmnI GCTCC 2 cut(s) 706, 742
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 8 cut(s) 72, 206, 549, 780, 907, 973, 1172, 1534
MaeI CTAG 7 cut(s) 210, 395, 437, 494, 1113, 1200, 1491
MaeII ACGT 1 cut(s) 1374
MaeIII GTNAC 3 cut(s) 75, 122, 1469
MalI GATC 3 cut(s) 912, 1068, 1317
MboI GATC 3 cut(s) 910, 1066, 1315
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 1315
MlyI GAGTC 3 cut(s) 20, 31, 262
MmeI TCCRAC 2 cut(s) 692, 808
Mph1103I ATGCAT 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 1400
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 775
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 1 cut(s) 1426
MvnI CGCG 2 cut(s) 116, 915
MwoI GCNNNNNNNGC 3 cut(s) 503, 512, 715
NdeII GATC 3 cut(s) 910, 1066, 1315
NlaIII CATG 6 cut(s) 159, 260, 1137, 1340, 1399, 1544
NlaIV GGNNCC 4 cut(s) 164, 782, 847, 1317
NmuCI GTSAC 1 cut(s) 1469
NruI TCGCGA 1 cut(s) 915
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 1 cut(s) 159
PaeR7I CTCGAG 3 cut(s) 84, 906, 1242
PagI TCATGA 2 cut(s) 256, 1540
PctI GAATGC 1 cut(s) 1426
PfeI GAWTC 3 cut(s) 230, 821, 1295
PkrI GCNGC 2 cut(s) 118, 402
PleI GAGTC 3 cut(s) 20, 31, 261
PpsI GAGTC 3 cut(s) 20, 31, 261
Ppu21I YACGTR 1 cut(s) 1375
PshBI ATTAAT 2 cut(s) 885, 1458
PsiI TTATAA 1 cut(s) 33
PspN4I GGNNCC 4 cut(s) 164, 782, 847, 1317
PspPI GGNCC 3 cut(s) 518, 781, 845
PspXI VCTCGAGB 2 cut(s) 84, 1242
PsuI RGATCY 1 cut(s) 1315
RruI TCGCGA 1 cut(s) 915
RsaI GTAC 2 cut(s) 1139, 1184
RsaNI GTAC 2 cut(s) 1138, 1183
RseI CAYNNNNRTG 1 cut(s) 1400
SacII CCGCGG 1 cut(s) 117
SatI GCNGC 2 cut(s) 117, 401
Sau3AI GATC 3 cut(s) 910, 1066, 1315
Sau96I GGNCC 3 cut(s) 518, 781, 845
SchI GAGTC 3 cut(s) 20, 31, 262
SfaNI GCATC 8 cut(s) 72, 206, 549, 780, 907, 973, 1172, 1534
SfcI CTRYAG 1 cut(s) 710
Sfr274I CTCGAG 3 cut(s) 84, 906, 1242
Sfr303I CCGCGG 1 cut(s) 117
SgrBI CCGCGG 1 cut(s) 117
SinI GGWCC 3 cut(s) 518, 781, 845
SlaI CTCGAG 3 cut(s) 84, 906, 1242
SmiMI CAYNNNNRTG 1 cut(s) 1400
SmlI CTYRAG 3 cut(s) 84, 906, 1242
SmoI CTYRAG 3 cut(s) 84, 906, 1242
SpeI ACTAGT 1 cut(s) 1112
SsiI CCGC 3 cut(s) 114, 116, 778
SspI AATATT 2 cut(s) 469, 817
SspMI CTAG 7 cut(s) 210, 395, 437, 494, 1113, 1200, 1491
TaiI ACGT 1 cut(s) 1377
TaqI TCGA 7 cut(s) 85, 173, 532, 907, 981, 1065, 1243
TatI WGTACW 1 cut(s) 1182
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 3 cut(s) 230, 821, 1295
TscAI CASTG 2 cut(s) 13, 1308
TseFI GTSAC 1 cut(s) 1469
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 1469
TspDTI ATGAA 4 cut(s) 447, 1113, 1444, 1529
TspGWI ACGGA 1 cut(s) 802
TspRI CASTG 2 cut(s) 13, 1308
VpaK11BI GGWCC 3 cut(s) 518, 781, 845
VspI ATTAAT 2 cut(s) 885, 1458
XceI RCATGY 1 cut(s) 159
XhoI CTCGAG 3 cut(s) 84, 906, 1242
XspI CTAG 7 cut(s) 210, 395, 437, 494, 1113, 1200, 1491
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.