Rroxscaffold_5G00341060

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000178
Physical Location & Seq
Forward (+)
9554479 .. 9559119
4641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341060.1

Sequence Viewer

Length: 690 bp
ATGGTTTCTCCGGCGGAAGAAAATGAGGTATGTGATTCAGCAGTGCTGGCAGAGGATCCCTATCAACAAGAGTTGCATGATTTTGTCAATCCTATTGAGGTTAATGATGGCTACGTGTCATTAAGTAGCGATGACATGGAAATGATTGTTGTGGATTTGAATGCCAAAAGACAACGAAGAGAAAATGATAGCTTCATTAATGATGATAGTGACAACGAAGATGGTGGCTCTAGTGATGACAATGTTGAGGGTGAATATGTCTCATCTGAGGATGATATTCATGATGCTTATCACACATCAACTCCAAGTGCACATGAAGAGATAGTTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGAAGAGAACATTGGTGGTAAATACGAGAAATTCAAATTGGGGAATGAACCACACGTGAATGAGGCTATTGAGGCAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTGCATAAGATGTTTTTGCAATATGAATCAGTAGAGGAGGCACTTAAGAACAGACCAGAAAATGTGGGAGAAGATGACTGGGATTTTCTCATCAATTGGTGGCATCATGACGAGTGGCTGGCTGGAGAGGAACCTAGCCGTATTGACATGTTCAAGCTGACAAGATTTAGGGATGTCGTTGAAAATGCTTATATTTGTGAAGAGTGGTCCAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

229

Amino Acids

26.61

Weight (kDa)

4.28

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AclWI GGATC 2 cut(s) 50, 63
AcsI RAATTY 1 cut(s) 389
AcvI CACGTG 1 cut(s) 415
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 3 cut(s) 114, 412, 618
AgsI TTSAA 5 cut(s) 160, 329, 394, 625, 653
AjuI GAANNNNNNNTTGG 4 cut(s) 354, 380, 386, 412
AluBI AGCT 2 cut(s) 192, 628
AluI AGCT 2 cut(s) 192, 628
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 2 cut(s) 50, 63
ApaLI GTGCAC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 389
AseI ATTAAT 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 313
BamHI GGATCC 1 cut(s) 55
BbrPI CACGTG 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 2 cut(s) 101, 215
BceAI ACGGC 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 2 cut(s) 231, 606
BfrI CTTAAG 1 cut(s) 515
Bme18I GGWCC 1 cut(s) 678
BmgT120I GGNCC 1 cut(s) 678
BmiI GGNNCC 2 cut(s) 57, 603
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 2 cut(s) 274, 583
BmuI ACTGGG 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 321
BsaAI YACGTR 2 cut(s) 115, 415
BsaBI GATNNNNATC 2 cut(s) 60, 288
BsaJI CCNNGG 1 cut(s) 681
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bse1I ACTGG 1 cut(s) 554
Bse8I GATNNNNATC 2 cut(s) 60, 288
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 3 cut(s) 277, 346, 649
BseJI GATNNNNATC 2 cut(s) 60, 288
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 2 cut(s) 280, 577
BspLI GGNNCC 2 cut(s) 57, 603
BspPI GGATC 2 cut(s) 50, 63
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 681
Bst6I CTCTTC 4 cut(s) 172, 312, 357, 666
BstAFI CTTAAG 1 cut(s) 515
BstBAI YACGTR 2 cut(s) 115, 415
BstC8I GCNNGC 2 cut(s) 48, 591
BstDEI CTNAG 2 cut(s) 267, 358
BstF5I GGATG 3 cut(s) 277, 346, 649
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 47, 431
BstNSI RCATGY 1 cut(s) 622
BstSLI GKGCMC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 277, 346, 649
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 48, 591
CciI TCATGA 2 cut(s) 280, 577
Cfr13I GGNCC 1 cut(s) 678
CviAII CATG 7 cut(s) 77, 136, 281, 314, 439, 578, 619
CviJI RGCY 8 cut(s) 111, 192, 228, 425, 589, 593, 609, 628
CviKI_1 RGCY 8 cut(s) 111, 192, 228, 425, 589, 593, 609, 628
DdeI CTNAG 2 cut(s) 267, 358
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 4 cut(s) 172, 312, 357, 666
EarI CTCTTC 4 cut(s) 172, 312, 357, 666
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 678
Eco72I CACGTG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 7 cut(s) 80, 139, 284, 317, 442, 581, 622
FatI CATG 7 cut(s) 76, 135, 280, 313, 438, 577, 618
FokI GGATG 3 cut(s) 284, 333, 656
FspBI CTAG 2 cut(s) 231, 606
GsuI CTGGAG 1 cut(s) 615
HapII CCGG 1 cut(s) 11
Hin1II CATG 7 cut(s) 80, 139, 284, 317, 442, 581, 622
HinfI GANTC 3 cut(s) 35, 329, 497
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 268, 689
Hpy188III TCNNGA 2 cut(s) 281, 578
Hpy8I GTNNAC 1 cut(s) 311
HpyCH4IV ACGT 2 cut(s) 114, 414
HpyCH4V TGCA 4 cut(s) 76, 311, 475, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 431
HpyF3I CTNAG 2 cut(s) 267, 358
HpySE526I ACGT 2 cut(s) 114, 414
Hsp92II CATG 7 cut(s) 80, 139, 284, 317, 442, 581, 622
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 6 cut(s) 24, 32, 535, 540, 575, 579
LweI GCATC 2 cut(s) 274, 583
MaeI CTAG 2 cut(s) 231, 606
MaeII ACGT 2 cut(s) 114, 414
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 9 cut(s) 29, 189, 230, 324, 329, 374, 459, 554, 683
MfeI CAATTG 1 cut(s) 565
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 4 cut(s) 389, 395, 469, 565
MseI TTAA 4 cut(s) 102, 122, 198, 516
MslI CAYNNNNRTG 2 cut(s) 140, 417
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 11
MunI CAATTG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 47, 431
NdeII GATC 1 cut(s) 55
NlaIII CATG 7 cut(s) 80, 139, 284, 317, 442, 581, 622
NlaIV GGNNCC 2 cut(s) 57, 603
NmuCI GTSAC 1 cut(s) 209
NspI RCATGY 1 cut(s) 622
PagI TCATGA 2 cut(s) 280, 577
PciI ACATGT 1 cut(s) 618
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 35, 329, 497
PmaCI CACGTG 1 cut(s) 415
PmlI CACGTG 1 cut(s) 415
Ppu21I YACGTR 2 cut(s) 115, 415
PscI ACATGT 1 cut(s) 618
PshBI ATTAAT 1 cut(s) 198
PspCI CACGTG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 57, 603
PspPI GGNCC 1 cut(s) 678
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 140, 417
SaqAI TTAA 4 cut(s) 102, 122, 198, 516
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 678
SduI GDGCHC 1 cut(s) 313
SetI ASST 9 cut(s) 30, 102, 117, 194, 359, 417, 607, 630, 687
SfaNI GCATC 2 cut(s) 274, 583
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 2 cut(s) 140, 417
SmlI CTYRAG 2 cut(s) 336, 515
SmoI CTYRAG 2 cut(s) 336, 515
Sse9I AATT 4 cut(s) 389, 395, 469, 565
SsiI CCGC 1 cut(s) 14
SspMI CTAG 2 cut(s) 231, 606
StyI CCWWGG 1 cut(s) 681
TaiI ACGT 2 cut(s) 117, 417
TasI AATT 4 cut(s) 389, 395, 469, 565
TfiI GAWTC 3 cut(s) 35, 329, 497
Tru1I TTAA 4 cut(s) 102, 122, 198, 516
Tru9I TTAA 4 cut(s) 102, 122, 198, 516
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 6 cut(s) 184, 269, 330, 420, 455, 510
TspRI CASTG 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 678
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 622
XspI CTAG 2 cut(s) 231, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.