Rmu_sc0017962.1_g000001

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017962.1
OG0000178
Physical Location & Seq
Reverse (-)
384 .. 1862
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017962.1_g000001.1.cds

Sequence Viewer

Length: 408 bp
atgtgcagtgatcctgcgcaatcaaagactgcgtttgttacattcaaggatgctaaagctcttgaaatcgcactcttgttatcggctcttgttcttgggttacatgttcttgcggaagagatgaagaatctacaaaacgagccacaaatgaatgaagaaattggtgaaataatgtctgaagatgagatccatgataaagttctttcgaaaattgttggtccacctcgatcaggctatatacgaggcttaggagctgggccaaagcctaaaagatctaaacttgcagcaagtgatgctcaactgagggaggcaaatcaaagggctgatcaagcagaaagacgagcaatgcagcttgcagaggagttgatggctgtgaagtctactgcagctcaggaaaatgaggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

5.17

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 18
AccI GTMKAC 1 cut(s) 380
AciI CCGC 1 cut(s) 113
AclWI GGATC 2 cut(s) 5, 181
AcuI CTGAAG 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 2 cut(s) 46, 65
AluBI AGCT 4 cut(s) 59, 254, 352, 389
AluI AGCT 4 cut(s) 59, 254, 352, 389
AlwI GGATC 2 cut(s) 5, 181
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 284, 349, 386
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 218, 257
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 296, 361, 398
BccI CCATC 1 cut(s) 361
BclI TGATCA 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 384
BglII AGATCT 1 cut(s) 272
BisI GCNGC 3 cut(s) 285, 350, 387
BlsI GCNGC 3 cut(s) 286, 351, 388
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 218, 257
BmsI GCATC 2 cut(s) 40, 283
Bpu10I CCTNAGC 2 cut(s) 247, 390
Bpu14I TTCGAA 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 351
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 293, 404
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 296, 361, 398
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 5 cut(s) 10, 186, 227, 272, 325
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 294, 403
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 2 cut(s) 5, 181
BspT104I TTCGAA 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 351
BssMI GATC 5 cut(s) 10, 186, 227, 272, 325
Bst6I CTCTTC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 247, 302, 390
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 5 cut(s) 13, 189, 230, 275, 328
BstMBI GATC 5 cut(s) 10, 186, 227, 272, 325
BstMWI GCNNNNNNNGC 2 cut(s) 293, 329
BstNSI RCATGY 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 296, 361, 398
BstX2I RGATCY 2 cut(s) 186, 272
BstYI RGATCY 2 cut(s) 186, 272
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 218, 257
CviAII CATG 2 cut(s) 104, 191
DdeI CTNAG 3 cut(s) 247, 302, 390
DpnI GATC 5 cut(s) 12, 188, 229, 274, 327
DpnII GATC 5 cut(s) 10, 186, 227, 272, 325
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 228
FaeI CATG 2 cut(s) 107, 194
FaiI YATR 4 cut(s) 105, 192, 237, 239
FatI CATG 2 cut(s) 103, 190
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 3 cut(s) 285, 350, 387
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 285, 350, 387
FspI TGCGCA 1 cut(s) 18
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 285, 350, 387
GsaI CCCAGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 259
HhaI GCGC 1 cut(s) 19
Hin1II CATG 2 cut(s) 107, 194
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 221, 381
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 62, 392
Hpy8I GTNNAC 2 cut(s) 221, 381
HpyCH4V TGCA 5 cut(s) 6, 284, 349, 356, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 329
HpyF3I CTNAG 3 cut(s) 247, 302, 390
Hsp92II CATG 2 cut(s) 107, 194
HspAI GCGC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 10, 186, 227, 272, 325
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 4 cut(s) 27, 216, 240, 377
Lsp1109I GCAGC 3 cut(s) 296, 361, 398
LweI GCATC 2 cut(s) 40, 283
MaeIII GTNAC 2 cut(s) 37, 99
MalI GATC 5 cut(s) 12, 188, 229, 274, 327
MboI GATC 5 cut(s) 10, 186, 227, 272, 325
MboII GAAGA 4 cut(s) 128, 136, 167, 191
MflI RGATCY 2 cut(s) 186, 272
MluCI AATT 2 cut(s) 159, 210
MnlI CCTC 6 cut(s) 234, 236, 297, 301, 352, 394
MwoI GCNNNNNNNGC 2 cut(s) 293, 329
NdeII GATC 5 cut(s) 10, 186, 227, 272, 325
NlaIII CATG 2 cut(s) 107, 194
NsbI TGCGCA 1 cut(s) 18
NspI RCATGY 1 cut(s) 107
NspV TTCGAA 1 cut(s) 206
PciI ACATGT 1 cut(s) 103
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 286, 351, 388
PscI ACATGT 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 218, 257
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 2 cut(s) 186, 272
SatI GCNGC 3 cut(s) 285, 350, 387
Sau3AI GATC 5 cut(s) 10, 186, 227, 272, 325
Sau96I GGNCC 2 cut(s) 218, 257
SetI ASST 5 cut(s) 61, 226, 256, 354, 391
SfaNI GCATC 2 cut(s) 40, 283
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 159, 210
SsiI CCGC 1 cut(s) 113
TaqI TCGA 2 cut(s) 206, 226
TasI AATT 2 cut(s) 159, 210
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 13
TseI GCWGC 3 cut(s) 284, 349, 386
TspDTI ATGAA 3 cut(s) 137, 164, 168
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 228
XceI RCATGY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.