FvH4_3g22812

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000178
Physical Location & Seq
Reverse (-)
15969080 .. 15971976
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22812.t1

Sequence Viewer

Length: 1569 bp
ATGGCCAAGAGAACACAAGGTCCTAGGTTTTTGCATCAATTGCGAACTTCAGCTCTTCCACCAAACCAGTTGCGAACTTCTGCTGAAAAGGTCTCTAGGCTTGCAAAGCCTTCAGACAAATCTGCAACACCTTCATGTCCATTGCAATCTCCTACTGAAAAGGTTGCTAGAAAGTCTTCAGATAGACCAACAACATTTTCACGCCCATTACGGTCACCTCCTACAAAGCATTCAAATGCACAGACTTCCACAAATCGATCGACACATTCTCGTCGACCTGCTCTACAATCATCAAGAACTCCATCTCCTCTTTTATCTTCGCATATTATGAGATCACCTTCGCTTTCCCGTTCACCTCCACATATGAGGGAACTCCTATCATCCTCTACTCGGCACAGATCAACTCGTGCACATGAAGAGATAGCTGAATCTTCCCAAGTTGCTCATTCTCCTACTTTAGAAGAGAATAACTCTGATGCACCCAAGAAGCAACGACTCCTATCATCCTCTACTCGGCACAGATCAACTCGTGCGCATCAAGAGATAGCTGAATCTTCCGAAGTTGCTCATTCTCCTACTTTAGAAGAGAATAACACTGGTGCACCCAAGAAGCAACGACGTGGTGAGACTCGAGGTATGGGGATAGCCAAGAAGAAACGTTCTAGTAATCCGATAGAGATTGATATCCCAGAGCATTTGAAACGAGCCATAGGAGAGAATTGCCAATCTTACATCACAGAGATAGGTTGCATTGTTAGGCAAAATGCCCCATTACAAGTTAAGTACTGGAGTGAGATTAAAAGGGATGATGTTGATGCGCTAGTTCGTCTTGTCCGTGAAAAATTCAAATTGAGCAAGGAACCACACGTGGATGAGGCTATTGAGGATCACATGAAAAGAAGATATACCACTTGGCGATACAATATGCATAAGAAGTATCTGCAATATGAATCTGTGGAGGAGGCAATTGAGAACATACCTGAAAACGTGGGAGAAGATGACTGGTATTGGCTCATCGATTGGTGGAACAATGAGGAATTTTTGAAAAATCCTGAGACTGGAGAGGAACCTAGCCGTATTGACATGTTCAAGCTGACAAGATTTAGAGAAAACAAGAAAACATGGGTTGGGGATGTTGCGGAAAATGCTTATGGTGACATGACAATGCTAAAAACTCCTGAGCAAACAAATGAAGAACCAGAGAAAGCAATGTCTGATGATGCGATTTATGATACAGTTCTCACCAAAATTATTGGTCCACCTTGGTCAGGATACATACGTGGGTTAGGAGCAGGCCCTACACCTAAAAAATCAAAAGTAGCTTCAAACAGTCATTCACAACTTCAAGAGGCTACACGGAGGGCAGATGAGGCAGAGAGACGATCCACCCAACTAGCAGAGGAGTTAGAGGCGATGAAGGCTAGTGCAACTCAACAAAATGAAGAACTAGAGGCAATGAAGGCCAATGCAGCTCAACAAAGTGAAGAGTTGGAGGCAGTTAAAGCAAAACAAACCAAGACAGATACATTTATAAGAAGACTACTGGAACAGCTATCCTCTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

523

Amino Acids

59.46

Weight (kDa)

9.34

Isoelectric Point (pI)

70.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1532
Acc16I TGCGCA 1 cut(s) 534
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 274
AciI CCGC 1 cut(s) 1139
AclI AACGTT 1 cut(s) 658
AclWI GGATC 2 cut(s) 894, 1377
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 842, 1037
AcuI CTGAAG 3 cut(s) 33, 96, 162
AcvI CACGTG 1 cut(s) 868
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 4 cut(s) 390, 513, 1058, 1268
AflIII ACRYGT 2 cut(s) 865, 1083
AgsI TTSAA 7 cut(s) 234, 700, 847, 1045, 1090, 1326, 1346
AjiI CACGTC 1 cut(s) 620
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AloI GAACNNNNNNTCC 3 cut(s) 36, 289, 321
AluBI AGCT 7 cut(s) 53, 425, 548, 1093, 1322, 1472, 1552
AluI AGCT 7 cut(s) 53, 425, 548, 1093, 1322, 1472, 1552
Alw21I GWGCWC 2 cut(s) 412, 604
Alw26I GTCTC 4 cut(s) 97, 620, 1049, 1372
Alw44I GTGCAC 2 cut(s) 408, 600
AlwI GGATC 2 cut(s) 894, 1377
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 3 cut(s) 3, 1294, 1461
ApaLI GTGCAC 2 cut(s) 408, 600
ApeKI GCWGC 1 cut(s) 1469
ApoI RAATTY 2 cut(s) 842, 1037
Asp700I GAANNNNTTC 1 cut(s) 175
AspA2I CCTAGG 1 cut(s) 23
AspLEI GCGC 2 cut(s) 535, 820
AspS9I GGNCC 3 cut(s) 20, 1256, 1295
AsuHPI GGTGA 6 cut(s) 207, 327, 345, 635, 1166, 1234
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 2 cut(s) 20, 1256
AvrII CCTAGG 1 cut(s) 23
BaeGI GKGCMC 2 cut(s) 412, 604
BaeI ACNNNNGTAYC 2 cut(s) 1264, 1297
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 2 cut(s) 405, 528
BbrPI CACGTG 1 cut(s) 868
BbsI GAAGAC 2 cut(s) 168, 1543
Bbv12I GWGCWC 2 cut(s) 412, 604
BbvI GCAGC 1 cut(s) 1481
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 1059
BciVI GTATCC 1 cut(s) 1265
BcoDI GTCTC 4 cut(s) 97, 620, 1049, 1372
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 1265
BisI GCNGC 1 cut(s) 1470
BlnI CCTAGG 1 cut(s) 23
BlsI GCNGC 1 cut(s) 1471
BmcAI AGTACT 1 cut(s) 785
Bme18I GGWCC 2 cut(s) 20, 1256
BmeT110I CYCGRG 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 3 cut(s) 20, 1256, 1295
BmiI GGNNCC 2 cut(s) 861, 1068
BmsI GCATC 5 cut(s) 43, 466, 544, 805, 1210
BpiI GAAGAC 2 cut(s) 168, 1543
BplI GAGNNNNNCTC 2 cut(s) 455, 487
BpmI CTGGAG 2 cut(s) 808, 1080
Bpu10I CCTNAGC 1 cut(s) 1179
Bsa29I ATCGAT 2 cut(s) 256, 1017
BsaAI YACGTR 2 cut(s) 868, 1280
BsaBI GATNNNNATC 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 23, 1262
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 4 cut(s) 390, 513, 1058, 1268
Bse1I ACTGG 6 cut(s) 67, 601, 791, 1007, 1063, 1548
Bse3DI GCAATG 3 cut(s) 140, 1215, 1461
Bse8I GATNNNNATC 1 cut(s) 683
BseCI ATCGAT 2 cut(s) 256, 1017
BseDI CCNNGG 2 cut(s) 23, 1262
BseGI GGATG 5 cut(s) 380, 503, 811, 877, 1138
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 4 cut(s) 390, 513, 1058, 1268
BseMI GCAATG 3 cut(s) 140, 1215, 1461
BseMII CTCAG 2 cut(s) 1044, 1170
BseNI ACTGG 6 cut(s) 67, 601, 791, 1007, 1063, 1548
BseRI GAGGAG 3 cut(s) 297, 974, 1415
BseSI GKGCMC 2 cut(s) 412, 604
BseXI GCAGC 1 cut(s) 1481
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 3 cut(s) 5, 1296, 1463
BshVI ATCGAT 2 cut(s) 256, 1017
BsiEI CGRYCG 1 cut(s) 260
BsiHKAI GWGCWC 2 cut(s) 412, 604
BsiHKCI CYCGRG 1 cut(s) 630
BslI CCNNNNNNNGG 4 cut(s) 390, 513, 1058, 1268
BsmAI GTCTC 4 cut(s) 97, 620, 1049, 1372
BsmBI CGTCTC 1 cut(s) 1372
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 3 cut(s) 5, 1296, 1463
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 2 cut(s) 412, 604
Bsp143I GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
BspACI CCGC 1 cut(s) 1139
BspANI GGCC 3 cut(s) 5, 1296, 1463
BspCNI CTCAG 2 cut(s) 1045, 1171
BspDI ATCGAT 2 cut(s) 256, 1017
BspLI GGNNCC 2 cut(s) 861, 1068
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 2 cut(s) 894, 1377
BspQI GCTCTTC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 3 cut(s) 140, 1215, 1461
BsrI ACTGG 6 cut(s) 67, 601, 791, 1007, 1063, 1548
BssECI CCNNGG 2 cut(s) 23, 1262
BssMI GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
BssSI CACGAG 2 cut(s) 405, 528
BssT1I CCWWGG 2 cut(s) 23, 1262
Bst2BI CACGAG 2 cut(s) 405, 528
Bst4CI ACNGT 3 cut(s) 213, 1237, 1331
Bst6I CTCTTC 5 cut(s) 60, 411, 456, 579, 1479
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBAI YACGTR 2 cut(s) 868, 1280
BstC8I GCNNGC 2 cut(s) 102, 1294
BstDEI CTNAG 2 cut(s) 1053, 1179
BstEII GGTNACC 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 1266
BstF5I GGATG 5 cut(s) 380, 503, 811, 877, 1138
BstHHI GCGC 2 cut(s) 535, 820
BstKTI GATC 6 cut(s) 260, 335, 401, 524, 889, 1385
BstMAI GTCTC 4 cut(s) 97, 620, 1049, 1372
BstMBI GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 8 cut(s) 40, 106, 1145, 1370, 1418, 1460, 1469, 1502
BstNSI RCATGY 1 cut(s) 1087
BstPI GGTNACC 1 cut(s) 213
BstSLI GKGCMC 2 cut(s) 412, 604
BstV1I GCAGC 1 cut(s) 1481
BstV2I GAAGAC 2 cut(s) 168, 1543
Bsu15I ATCGAT 2 cut(s) 256, 1017
BsuI GTATCC 1 cut(s) 1265
BsuRI GGCC 3 cut(s) 5, 1296, 1463
BsuTUI ATCGAT 2 cut(s) 256, 1017
BtgZI GCGATG 1 cut(s) 1427
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 5 cut(s) 380, 503, 811, 877, 1138
BtsIMutI CAGTG 1 cut(s) 594
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 102, 1294
CfoI GCGC 2 cut(s) 535, 820
Cfr13I GGNCC 3 cut(s) 20, 1256, 1295
ClaI ATCGAT 2 cut(s) 256, 1017
Csp6I GTAC 1 cut(s) 784
CviAII CATG 6 cut(s) 135, 413, 892, 1084, 1122, 1159
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 2 cut(s) 1053, 1179
DpnI GATC 6 cut(s) 259, 334, 400, 523, 888, 1384
DpnII GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 60, 411, 456, 579, 1479
EarI CTCTTC 5 cut(s) 60, 411, 456, 579, 1479
Eco130I CCWWGG 2 cut(s) 23, 1262
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 20, 1256
Eco57I CTGAAG 3 cut(s) 33, 96, 162
Eco72I CACGTG 1 cut(s) 868
Eco88I CYCGRG 1 cut(s) 630
Eco91I GGTNACC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 1266
EcoO109I RGGNCCY 2 cut(s) 20, 1295
EcoO65I GGTNACC 1 cut(s) 213
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 23, 1262
EcoT22I ATGCAT 1 cut(s) 930
ErhI CCWWGG 2 cut(s) 23, 1262
Esp3I CGTCTC 1 cut(s) 1372
FaeI CATG 6 cut(s) 138, 416, 895, 1087, 1125, 1162
FatI CATG 6 cut(s) 134, 412, 891, 1083, 1121, 1158
FauNDI CATATG 1 cut(s) 363
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 1470
FokI GGATG 5 cut(s) 367, 490, 818, 884, 1145
Fsp4HI GCNGC 1 cut(s) 1470
FspAI RTGCGCAY 1 cut(s) 534
FspI TGCGCA 1 cut(s) 534
GlaI GCGC 2 cut(s) 534, 819
GluI GCNGC 1 cut(s) 1470
GsuI CTGGAG 2 cut(s) 808, 1080
HaeIII GGCC 3 cut(s) 5, 1296, 1463
HhaI GCGC 2 cut(s) 535, 820
Hin1II CATG 6 cut(s) 138, 416, 895, 1087, 1125, 1162
Hin6I GCGC 2 cut(s) 533, 818
HinP1I GCGC 2 cut(s) 533, 818
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HinfI GANTC 5 cut(s) 428, 495, 551, 628, 950
HphI GGTGA 6 cut(s) 207, 327, 345, 635, 1166, 1234
Hpy166II GTNNAC 5 cut(s) 275, 353, 410, 602, 1259
Hpy188I TCNGA 6 cut(s) 115, 181, 475, 559, 672, 1216
Hpy188III TCNNGA 6 cut(s) 294, 539, 1052, 1178, 1269, 1346
Hpy8I GTNNAC 5 cut(s) 275, 353, 410, 602, 1259
Hpy99I CGWCG 2 cut(s) 276, 621
HpyAV CCTTC 5 cut(s) 120, 141, 348, 1411, 1453
HpyCH4III ACNGT 3 cut(s) 213, 1237, 1331
HpyCH4IV ACGT 5 cut(s) 619, 658, 867, 987, 1279
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 106, 1145, 1370, 1418, 1460, 1469, 1502
HpyF3I CTNAG 2 cut(s) 1053, 1179
HpySE526I ACGT 5 cut(s) 619, 658, 867, 987, 1279
Hsp92II CATG 6 cut(s) 138, 416, 895, 1087, 1125, 1162
HspAI GCGC 2 cut(s) 533, 818
Kzo9I GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 1289
Lsp1109I GCAGC 1 cut(s) 1481
LweI GCATC 5 cut(s) 43, 466, 544, 805, 1210
MaeII ACGT 5 cut(s) 619, 658, 867, 987, 1279
MaeIII GTNAC 2 cut(s) 213, 1154
MalI GATC 6 cut(s) 259, 334, 400, 523, 888, 1384
MboI GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
MfeI CAATTG 2 cut(s) 38, 966
MhlI GDGCHC 2 cut(s) 412, 604
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 38, 718, 842, 848, 966, 1037, 1248
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 489, 622
MmeI TCCRAC 1 cut(s) 1470
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 780, 798, 1500
MslI CAYNNNNRTG 4 cut(s) 133, 234, 870, 1163
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 2 cut(s) 38, 966
Mva1269I GAATGC 1 cut(s) 229
MwoI GCNNNNNNNGC 8 cut(s) 40, 106, 1145, 1370, 1418, 1460, 1469, 1502
NdeI CATATG 1 cut(s) 363
NdeII GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
NlaIII CATG 6 cut(s) 138, 416, 895, 1087, 1125, 1162
NlaIV GGNNCC 2 cut(s) 861, 1068
NmeAIII GCCGAG 2 cut(s) 370, 493
NmuCI GTSAC 2 cut(s) 213, 1154
NsbI TGCGCA 1 cut(s) 534
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 1 cut(s) 1087
PaeR7I CTCGAG 1 cut(s) 630
PciI ACATGT 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 832
PctI GAATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 3 cut(s) 428, 551, 950
PkrI GCNGC 1 cut(s) 1471
Ple19I CGATCG 1 cut(s) 260
PleI GAGTC 2 cut(s) 489, 622
PmaCI CACGTG 1 cut(s) 868
PmlI CACGTG 1 cut(s) 868
PpsI GAGTC 2 cut(s) 489, 622
Ppu21I YACGTR 2 cut(s) 868, 1280
PpuMI RGGWCCY 1 cut(s) 20
PscI ACATGT 1 cut(s) 1083
PsiI TTATAA 1 cut(s) 1532
Psp1406I AACGTT 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 20
PspCI CACGTG 1 cut(s) 868
PspEI GGTNACC 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 861, 1068
PspPI GGNCC 3 cut(s) 20, 1256, 1295
PspPPI RGGWCCY 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 630
PvuI CGATCG 1 cut(s) 260
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 4 cut(s) 133, 234, 870, 1163
SalI GTCGAC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 3 cut(s) 780, 798, 1500
SatI GCNGC 1 cut(s) 1470
Sau3AI GATC 6 cut(s) 257, 332, 398, 521, 886, 1382
Sau96I GGNCC 3 cut(s) 20, 1256, 1295
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 2 cut(s) 489, 622
SduI GDGCHC 2 cut(s) 412, 604
SfaNI GCATC 5 cut(s) 43, 466, 544, 805, 1210
Sfr274I CTCGAG 1 cut(s) 630
SinI GGWCC 2 cut(s) 20, 1256
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 4 cut(s) 133, 234, 870, 1163
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 7 cut(s) 38, 718, 842, 848, 966, 1037, 1248
SsiI CCGC 1 cut(s) 1139
StyI CCWWGG 2 cut(s) 23, 1262
TaaI ACNGT 3 cut(s) 213, 1237, 1331
TaiI ACGT 5 cut(s) 622, 661, 870, 990, 1282
TaqI TCGA 5 cut(s) 256, 260, 274, 631, 1017
TasI AATT 7 cut(s) 38, 718, 842, 848, 966, 1037, 1248
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 3 cut(s) 428, 551, 950
Tru1I TTAA 3 cut(s) 780, 798, 1500
Tru9I TTAA 3 cut(s) 780, 798, 1500
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 2 cut(s) 213, 1154
TseI GCWGC 1 cut(s) 1469
Tsp45I GTSAC 2 cut(s) 213, 1154
TspDTI ATGAA 8 cut(s) 123, 429, 908, 963, 1206, 1430, 1455, 1472
TspGWI ACGGA 2 cut(s) 824, 1372
TspRI CASTG 1 cut(s) 601
VneI GTGCAC 2 cut(s) 408, 600
VpaK11BI GGWCC 2 cut(s) 20, 1256
XagI CCTNNNNNAGG 1 cut(s) 1266
XapI RAATTY 2 cut(s) 842, 1037
XceI RCATGY 1 cut(s) 1087
XhoI CTCGAG 1 cut(s) 630
XmaJI CCTAGG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.