Rmu_sc0000651.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000651.1
OG0000178
Physical Location & Seq
Forward (+)
71471 .. 73306
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000651.1_g000012.1.cds

Sequence Viewer

Length: 612 bp
atgaagccagggtctaaagatgagatctatgataaagttctttcgaagattgttggtctacctcgatcaggttatatacgaggcttaggagctgggccaaagcctaaaagatctaaatttacagtgaatgatgctcaactgagggaggcaaatcaaagggtggatcaagcagaaagacgagcaaagcagcttgcagaggagttgatggctgtgaagtctactgctcaggaaaatgaggagttaaaacattggtcactaatatccagatttgttgtagtggcagtagatgcagaggtgcatgcagtagttgaggcaataaacattgttggtgctaaaggcccagttagcctcgccagctctagcctcgcaaagcctcagcacgcgtccctgggcctcctgccgagcacgttagcctcgcttcgacggatctttagcctcgcctcggcgtcctctgcgcagcactcgcacaagcctcgctaccccagtgcattaacctcaccatctgcccacagtatccatgcaggccctgccgacagtccccgcaagctagcctcacctgtttctgacaactcgccttccagtctcgcacacgcctcacaagtccctgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.56

Weight (kDa)

9.94

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 456
AccI GTMKAC 2 cut(s) 58, 218
AccII CGCG 1 cut(s) 383
AciI CCGC 1 cut(s) 541
AclWI GGATC 2 cut(s) 171, 434
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 68, 442
AflIII ACRYGT 1 cut(s) 381
AjnI CCWGG 2 cut(s) 7, 387
AluBI AGCT 4 cut(s) 92, 190, 357, 547
AluI AGCT 4 cut(s) 92, 190, 357, 547
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 2 cut(s) 171, 434
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 4 cut(s) 95, 337, 391, 523
ApeKI GCWGC 2 cut(s) 187, 457
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 4 cut(s) 95, 338, 391, 524
AsuHPI GGTGA 2 cut(s) 489, 546
AsuII TTCGAA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 407
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 199, 469
BccI CCATC 2 cut(s) 199, 508
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 2 cut(s) 9, 389
BciVI GTATCC 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 2 cut(s) 360, 548
BfuI GTATCC 1 cut(s) 524
BglII AGATCT 2 cut(s) 24, 110
BisI GCNGC 2 cut(s) 188, 458
BlsI GCNGC 2 cut(s) 189, 459
Bme1390I CCNGG 2 cut(s) 9, 389
BmgT120I GGNCC 4 cut(s) 95, 338, 391, 524
BmrFI CCNGG 2 cut(s) 9, 389
BmrI ACTGGG 2 cut(s) 335, 477
BmsI GCATC 2 cut(s) 121, 277
BmtI GCTAGC 1 cut(s) 551
BmuI ACTGGG 2 cut(s) 335, 477
Bpu10I CCTNAGC 3 cut(s) 85, 225, 375
Bpu14I TTCGAA 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 4 cut(s) 8, 387, 388, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 442
Bse1I ACTGG 3 cut(s) 341, 483, 579
BseBI CCWGG 2 cut(s) 9, 389
BseDI CCNNGG 4 cut(s) 8, 387, 388, 441
BseLI CCNNNNNNNGG 2 cut(s) 68, 442
BseMII CTCAG 3 cut(s) 131, 239, 389
BseNI ACTGG 3 cut(s) 341, 483, 579
BseRI GAGGAG 2 cut(s) 212, 251
BseXI GCAGC 2 cut(s) 199, 469
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 4 cut(s) 97, 339, 393, 525
BsiHKAI GWGCWC 1 cut(s) 407
BslFI GGGAC 3 cut(s) 370, 522, 587
BslI CCNNNNNNNGG 2 cut(s) 68, 442
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 3 cut(s) 370, 522, 587
BsnI GGCC 4 cut(s) 97, 339, 393, 525
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 5 cut(s) 24, 65, 110, 163, 426
BspACI CCGC 1 cut(s) 541
BspANI GGCC 4 cut(s) 97, 339, 393, 525
BspCNI CTCAG 3 cut(s) 132, 238, 388
BspFNI CGCG 1 cut(s) 383
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 2 cut(s) 171, 434
BspT104I TTCGAA 1 cut(s) 44
BsrI ACTGG 3 cut(s) 341, 483, 579
BssECI CCNNGG 4 cut(s) 8, 387, 388, 441
BssMI GATC 5 cut(s) 24, 65, 110, 163, 426
BssNI GRCGYC 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 9, 389
Bst4CI ACNGT 3 cut(s) 124, 512, 536
BstACI GRCGYC 1 cut(s) 446
BstAPI GCANNNNNTGC 2 cut(s) 287, 527
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 7 cut(s) 192, 300, 355, 381, 523, 545, 549
BstDEI CTNAG 4 cut(s) 85, 140, 225, 375
BstENI CCTNNNNNAGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 383
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 5 cut(s) 27, 68, 113, 166, 429
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 5 cut(s) 24, 65, 110, 163, 426
BstMWI GCNNNNNNNGC 6 cut(s) 287, 345, 354, 452, 463, 527
BstNI CCWGG 2 cut(s) 9, 389
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 7, 387
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 199, 469
BstX2I RGATCY 3 cut(s) 24, 110, 426
BstYI RGATCY 3 cut(s) 24, 110, 426
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 4 cut(s) 97, 339, 393, 525
BtsIMutI CAGTG 2 cut(s) 129, 490
Cac8I GCNNGC 7 cut(s) 192, 300, 355, 381, 523, 545, 549
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 4 cut(s) 95, 338, 391, 524
CseI GACGC 2 cut(s) 372, 435
CviAII CATG 2 cut(s) 299, 518
DdeI CTNAG 4 cut(s) 85, 140, 225, 375
DpnI GATC 5 cut(s) 26, 67, 112, 165, 428
DpnII GATC 5 cut(s) 24, 65, 110, 163, 426
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 7, 387
FaeI CATG 2 cut(s) 302, 521
FaiI YATR 5 cut(s) 30, 75, 77, 300, 519
FaqI GGGAC 3 cut(s) 370, 522, 587
FatI CATG 2 cut(s) 298, 517
FauI CCCGC 1 cut(s) 548
FblI GTMKAC 2 cut(s) 58, 218
Fnu4HI GCNGC 2 cut(s) 188, 458
Fsp4HI GCNGC 2 cut(s) 188, 458
FspBI CTAG 2 cut(s) 360, 548
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 1 cut(s) 456
GluI GCNGC 2 cut(s) 188, 458
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 4 cut(s) 97, 339, 393, 525
HgaI GACGC 2 cut(s) 372, 435
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 2 cut(s) 302, 521
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HphI GGTGA 2 cut(s) 489, 546
Hpy166II GTNNAC 2 cut(s) 59, 219
Hpy188I TCNGA 1 cut(s) 565
Hpy188III TCNNGA 2 cut(s) 227, 264
Hpy8I GTNNAC 2 cut(s) 59, 219
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 3 cut(s) 124, 512, 536
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 6 cut(s) 194, 290, 298, 302, 488, 521
HpyF10VI GCNNNNNNNGC 6 cut(s) 287, 345, 354, 452, 463, 527
HpyF3I CTNAG 4 cut(s) 85, 140, 225, 375
HpySE526I ACGT 1 cut(s) 407
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 2 cut(s) 302, 521
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 5 cut(s) 24, 65, 110, 163, 426
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 2 cut(s) 199, 469
LweI GCATC 2 cut(s) 121, 277
MaeI CTAG 2 cut(s) 360, 548
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 252
MalI GATC 5 cut(s) 26, 67, 112, 165, 428
MboI GATC 5 cut(s) 24, 65, 110, 163, 426
MboII GAAGA 1 cut(s) 58
MflI RGATCY 3 cut(s) 24, 110, 426
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 1 cut(s) 116
MluI ACGCGT 1 cut(s) 381
MseI TTAA 2 cut(s) 242, 491
MspR9I CCNGG 2 cut(s) 9, 389
MvaI CCWGG 2 cut(s) 9, 389
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 6 cut(s) 287, 345, 354, 452, 463, 527
NdeII GATC 5 cut(s) 24, 65, 110, 163, 426
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 2 cut(s) 302, 521
NmeAIII GCCGAG 2 cut(s) 422, 426
NmuCI GTSAC 1 cut(s) 252
NsbI TGCGCA 1 cut(s) 456
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 44
PaeI GCATGC 1 cut(s) 302
PasI CCCWGGG 1 cut(s) 388
PkrI GCNGC 2 cut(s) 189, 459
Psp6I CCWGG 2 cut(s) 7, 387
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 2 cut(s) 7, 387
PspPI GGNCC 4 cut(s) 95, 338, 391, 524
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 3 cut(s) 24, 110, 426
SaqAI TTAA 2 cut(s) 242, 491
SatI GCNGC 2 cut(s) 188, 458
Sau3AI GATC 5 cut(s) 24, 65, 110, 163, 426
Sau96I GGNCC 4 cut(s) 95, 338, 391, 524
ScrFI CCNGG 2 cut(s) 9, 389
SduI GDGCHC 1 cut(s) 407
SfaNI GCATC 2 cut(s) 121, 277
SfuI TTCGAA 1 cut(s) 44
SphI GCATGC 1 cut(s) 302
Sse9I AATT 1 cut(s) 116
SsiI CCGC 1 cut(s) 541
SspMI CTAG 2 cut(s) 360, 548
StyD4I CCNGG 2 cut(s) 7, 387
TaaI ACNGT 3 cut(s) 124, 512, 536
TaiI ACGT 1 cut(s) 410
TaqI TCGA 3 cut(s) 44, 64, 421
TasI AATT 1 cut(s) 116
Tru1I TTAA 2 cut(s) 242, 491
Tru9I TTAA 2 cut(s) 242, 491
TscAI CASTG 2 cut(s) 129, 490
TseFI GTSAC 1 cut(s) 252
TseI GCWGC 2 cut(s) 187, 457
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 2 cut(s) 129, 490
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 2 cut(s) 58, 218
XspI CTAG 2 cut(s) 360, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.