Rroxscaffold_1G00054800

Domain of unknown function (DUF4216)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000178
Physical Location & Seq
Forward (+)
76170153 .. 76172805
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054800.1

Sequence Viewer

Length: 1740 bp
ATGCAAGTTGAGGGTTCAACAGAAGATGTTGAATCCTTACTAAACTTGGCCAGTGGACCTCAGCGTGAAGTGGCACGATATAGTGGGTGTATCGTCAATGGCATAAGGTTTCATACTCAGAAACGTGACGCAAATAAAAAAACTCAAAACTATGGAGTGGTAGTCAAAGGAGAGCATCATGGTAAAAGTATCGACTTTTATGGTGTTTTGAAAGATATAATTGTGTTATCATACCTTGGAAATAATCAGGTGGTCGTTTTCGAATGTGATTGGCTGGATCTCAATGCAAGAAGGGGAATTCAAGTTGATGAGAACCAGTTTACAAGTGTTAATTTTACCAAAAAATGGTATATGAATGATCCATTTGCATTGGCATGTCAAACACAGCAGGTATACTATTTGAAAGATACAAAGCATGGTAGTAATTGGCGTGTTGTAGAAAGGTCGCAGCCTAGAGGGATGTATGATTTTATAGAAAAAGAAACTGAAGTGGGTGATTCATTAGAGGAGGTAGAAGATCCATATCAGCAAGAGTCACATGGGTATGTCAATTCAGTTGAAGTTGATGTTGAAGAGACGTCATTACATAGAGATGACATGGAAATGATCGTTGTTGATTTGAATGCTAAAGATAGCGATGCAAAAGATGGCGACTTTAATGATGAAGATAATGAGTTGATGTCTTATGATGATATCGAGGACGACTCTACCACAAGCACCGGCAGCCCCATTGCACTCATCAGAAATGCTATTATCACTTCCATTCCTACTCATGTTCCAAAACATAATTGTCCACCTCAAGTTCAATCATCACCACTTATGCGAATGCTAAGATCAGGTTCAATCATCACCACTCATGTTCGAAAAAATGTTCCATTGCAAATTAAGAAGTGGTCTGAGCTCTCAAGAGATGATGTTGCATTGCTAATTCGTCATGCCCGTGAAAAATTCAAGTTGAGCAATGAGTCTCATGTGGATGAGGCAATTGAGAAACATATGATGAGATATTTTACCACTTGGCGCTATAATTTGCGTAAGAAATTTCTGAAATATGACTCAATAGAGGAAGCTATAGAAAATCGACCTGAAGATGTGGAAGAGGAAGATTGGAACTATTTGATTGCAAATCTGTGGCAAGATGGAAAGTGGCTGGAAACAAGTGAAAAAAAAAGGAAAAATAGAGATAAGTTGGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGCCTTAGAACTGAAAATCGAAATTCTGAGAATGGAGAGGAAGTTGGTCGTATTGACCTTTTCAAGCTCACACGATATAGCGAAAAGAAATCTGCATGGGTTGGTGATACTGCAAAGAATGCTTTTGAAGAGATGCAGAATCTACAAAACGACCCACAAATGAATGAAGAAACTGGTGAAATAATGACTGAACATGAGATCTATGATAAACCTAAAAGATCTAAACTTGCAGCAAATGATGCTCAACTGAGGGAGGCAAATCAAAGGGCAGATCAAGCAGAAAGACGAGCAATGCAGCTTGCAGAGGAGTTGATGGCTGTGAAGTCTACTGCAGCTCAGCAAAATGAGGAGTTAAAGACAGTCAAAGCTGGTGCAGCTCAGCAAAATGAAGAGTTAGAAGCAGTAAAGGCTAGAGCCACTCAACAAAATGAAGAGTTAGAGGCACTAAAGGCAAGACAAAATCAGACCGACACACTTTTACTTAAATTGATGGCACAATTATCCCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218

Protein Analysis

579

Amino Acids

66.74

Weight (kDa)

5.16

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 76 - 146 8.2e-23 Domain of unknown function (DUF4216)
Transposase_24 PF03004 367 - 471 6e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 379
AccB7I CCANNNNNTGG 1 cut(s) 345
AccI GTMKAC 2 cut(s) 393, 1553
AclWI GGATC 3 cut(s) 285, 353, 512
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 4 cut(s) 297, 947, 1040, 1249
AcuI CTGAAG 2 cut(s) 507, 1107
AcyI GRCGYC 1 cut(s) 578
AdeI CACNNNGTG 1 cut(s) 1205
AfiI CCNNNNNNNGG 1 cut(s) 345
AluBI AGCT 7 cut(s) 901, 1070, 1294, 1525, 1562, 1595, 1604
AluI AGCT 7 cut(s) 901, 1070, 1294, 1525, 1562, 1595, 1604
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 2 cut(s) 569, 972
AlwI GGATC 3 cut(s) 285, 353, 512
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 6 cut(s) 448, 723, 1457, 1522, 1559, 1601
ApoI RAATTY 4 cut(s) 297, 947, 1040, 1249
AspLEI GCGC 1 cut(s) 1023
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 5 cut(s) 506, 804, 841, 1343, 1415
AsuII TTCGAA 2 cut(s) 261, 862
AvaII GGWCC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 50
BanII GRGCYC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 903
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 6 cut(s) 460, 735, 1469, 1534, 1571, 1613
BccI CCATC 4 cut(s) 641, 1133, 1534, 1711
BcoDI GTCTC 2 cut(s) 569, 972
BfaI CTAG 3 cut(s) 453, 1638, 1738
BfmI CTRYAG 2 cut(s) 1071, 1557
BfoI RGCGCY 1 cut(s) 1024
BfuAI ACCTGC 1 cut(s) 379
BglII AGATCT 2 cut(s) 1425, 1445
BisI GCNGC 6 cut(s) 449, 724, 1458, 1523, 1560, 1602
BlpI GCTNAGC 2 cut(s) 1563, 1605
BlsI GCNGC 6 cut(s) 450, 725, 1459, 1524, 1561, 1603
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmsI GCATC 4 cut(s) 184, 628, 1350, 1456
BplI GAGNNNNNCTC 2 cut(s) 689, 721
Bpu10I CCTNAGC 1 cut(s) 60
Bpu1102I GCTNAGC 2 cut(s) 1563, 1605
Bpu14I TTCGAA 2 cut(s) 261, 862
BpuEI CTTGAG 2 cut(s) 783, 889
BsaBI GATNNNNATC 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 235
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 1254, 1284
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 3 cut(s) 51, 316, 1405
Bse3DI GCAATG 5 cut(s) 729, 875, 920, 967, 1524
Bse8I GATNNNNATC 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 465, 982
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 5 cut(s) 729, 875, 920, 967, 1524
BseMII CTCAG 7 cut(s) 74, 131, 888, 1245, 1466, 1577, 1619
BseNI ACTGG 3 cut(s) 51, 316, 1405
BseRI GAGGAG 3 cut(s) 521, 1547, 1589
BseXI GCAGC 6 cut(s) 460, 735, 1469, 1534, 1571, 1613
BsgI GTGCAG 2 cut(s) 1227, 1620
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 1225
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 569, 972
BsmBI CGTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 1225
BsmI GAATGC 3 cut(s) 628, 831, 1351
BsnI GGCC 1 cut(s) 50
Bsp119I TTCGAA 2 cut(s) 261, 862
Bsp1286I GDGCHC 1 cut(s) 903
Bsp143I GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
Bsp1720I GCTNAGC 2 cut(s) 1563, 1605
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 7 cut(s) 73, 130, 889, 1246, 1467, 1576, 1618
BspMAI CTGCAG 1 cut(s) 1561
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 3 cut(s) 285, 353, 512
BspT104I TTCGAA 2 cut(s) 261, 862
BsrDI GCAATG 5 cut(s) 729, 875, 920, 967, 1524
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 3 cut(s) 51, 316, 1405
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
BssNAI GTATAC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 1588
Bst6I CTCTTC 5 cut(s) 567, 1092, 1350, 1611, 1653
BstACI GRCGYC 1 cut(s) 578
BstAPI GCANNNNNTGC 2 cut(s) 1346, 1466
BstBI TTCGAA 2 cut(s) 261, 862
BstC8I GCNNGC 1 cut(s) 1527
BstDEI CTNAG 9 cut(s) 60, 117, 830, 897, 1232, 1254, 1475, 1563, 1605
BstF5I GGATG 2 cut(s) 465, 982
BstH2I RGCGCY 1 cut(s) 1024
BstHHI GCGC 1 cut(s) 1023
BstKTI GATC 8 cut(s) 280, 361, 520, 609, 836, 1428, 1448, 1501
BstMAI GTCTC 2 cut(s) 569, 972
BstMBI GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
BstMWI GCNNNNNNNGC 7 cut(s) 723, 1346, 1466, 1502, 1601, 1634, 1676
BstNSI RCATGY 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 1071, 1557
BstV1I GCAGC 6 cut(s) 460, 735, 1469, 1534, 1571, 1613
BstX2I RGATCY 4 cut(s) 277, 517, 1425, 1445
BstYI RGATCY 4 cut(s) 277, 517, 1425, 1445
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 465, 982
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 1527
CfoI GCGC 1 cut(s) 1023
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 1 cut(s) 137
DdeI CTNAG 9 cut(s) 60, 117, 830, 897, 1232, 1254, 1475, 1563, 1605
DpnI GATC 8 cut(s) 279, 360, 519, 608, 835, 1427, 1447, 1500
DpnII GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
DraIII CACNNNGTG 1 cut(s) 1205
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 5 cut(s) 567, 1092, 1350, 1611, 1653
EarI CTCTTC 5 cut(s) 567, 1092, 1350, 1611, 1653
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 903
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 2 cut(s) 507, 1107
EcoICRI GAGCTC 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 297
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 569
FaqI GGGAC 1 cut(s) 1225
FauNDI CATATG 1 cut(s) 996
FblI GTMKAC 2 cut(s) 393, 1553
Fnu4HI GCNGC 6 cut(s) 449, 724, 1458, 1523, 1560, 1602
FokI GGATG 2 cut(s) 472, 989
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 6 cut(s) 449, 724, 1458, 1523, 1560, 1602
FspBI CTAG 3 cut(s) 453, 1638, 1738
GlaI GCGC 1 cut(s) 1022
GluI GCNGC 6 cut(s) 449, 724, 1458, 1523, 1560, 1602
HaeII RGCGCY 1 cut(s) 1024
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 720
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 1023
Hin1I GRCGYC 1 cut(s) 578
Hin6I GCGC 1 cut(s) 1021
HinP1I GCGC 1 cut(s) 1021
HinfI GANTC 7 cut(s) 32, 497, 533, 704, 965, 1055, 1366
HpaII CCGG 1 cut(s) 720
HphI GGTGA 5 cut(s) 506, 804, 841, 1343, 1415
Hpy166II GTNNAC 5 cut(s) 56, 321, 394, 794, 1554
Hpy188I TCNGA 6 cut(s) 120, 743, 898, 1047, 1255, 1692
Hpy188III TCNNGA 1 cut(s) 906
Hpy8I GTNNAC 5 cut(s) 56, 321, 394, 794, 1554
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 1588
HpyCH4IV ACGT 2 cut(s) 124, 578
HpyF10VI GCNNNNNNNGC 7 cut(s) 723, 1346, 1466, 1502, 1601, 1634, 1676
HpyF3I CTNAG 9 cut(s) 60, 117, 830, 897, 1232, 1254, 1475, 1563, 1605
HpySE526I ACGT 2 cut(s) 124, 578
Hsp92I GRCGYC 1 cut(s) 578
HspAI GCGC 1 cut(s) 1021
Kzo9I GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
Lsp1109I GCAGC 6 cut(s) 460, 735, 1469, 1534, 1571, 1613
LweI GCATC 4 cut(s) 184, 628, 1350, 1456
MaeI CTAG 3 cut(s) 453, 1638, 1738
MaeII ACGT 2 cut(s) 124, 578
MaeIII GTNAC 2 cut(s) 125, 534
MalI GATC 8 cut(s) 279, 360, 519, 608, 835, 1427, 1447, 1500
MboI GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 4 cut(s) 277, 517, 1425, 1445
MhlI GDGCHC 1 cut(s) 903
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 4 cut(s) 542, 698, 974, 1049
MmeI TCCRAC 1 cut(s) 1170
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
MseI TTAA 5 cut(s) 330, 657, 885, 1580, 1710
MslI CAYNNNNRTG 6 cut(s) 373, 543, 591, 602, 939, 975
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 1 cut(s) 720
MunI CAATTG 1 cut(s) 984
Mva1269I GAATGC 3 cut(s) 628, 831, 1351
MwoI GCNNNNNNNGC 7 cut(s) 723, 1346, 1466, 1502, 1601, 1634, 1676
NdeI CATATG 1 cut(s) 996
NdeII GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
NmuCI GTSAC 2 cut(s) 125, 534
NspI RCATGY 1 cut(s) 378
NspV TTCGAA 2 cut(s) 261, 862
PcsI WCGNNNNNNNCGW 1 cut(s) 937
PctI GAATGC 3 cut(s) 628, 831, 1351
PfeI GAWTC 3 cut(s) 32, 497, 1366
PflMI CCANNNNNTGG 1 cut(s) 345
PkrI GCNGC 6 cut(s) 450, 725, 1459, 1524, 1561, 1603
PleI GAGTC 4 cut(s) 541, 698, 973, 1049
PpsI GAGTC 4 cut(s) 541, 698, 973, 1049
Psp124BI GAGCTC 1 cut(s) 903
PspPI GGNCC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 1561
PsuI RGATCY 4 cut(s) 277, 517, 1425, 1445
RseI CAYNNNNRTG 6 cut(s) 373, 543, 591, 602, 939, 975
SacI GAGCTC 1 cut(s) 903
SaqAI TTAA 5 cut(s) 330, 657, 885, 1580, 1710
SatI GCNGC 6 cut(s) 449, 724, 1458, 1523, 1560, 1602
Sau3AI GATC 8 cut(s) 277, 358, 517, 606, 833, 1425, 1445, 1498
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 4 cut(s) 542, 698, 974, 1049
SduI GDGCHC 1 cut(s) 903
SfaNI GCATC 4 cut(s) 184, 628, 1350, 1456
SfcI CTRYAG 2 cut(s) 1071, 1557
SfuI TTCGAA 2 cut(s) 261, 862
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 6 cut(s) 373, 543, 591, 602, 939, 975
SmlI CTYRAG 2 cut(s) 798, 904
SmoI CTYRAG 2 cut(s) 798, 904
SspMI CTAG 3 cut(s) 453, 1638, 1738
SstI GAGCTC 1 cut(s) 903
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 1588
TaiI ACGT 2 cut(s) 127, 581
TaqI TCGA 6 cut(s) 192, 261, 696, 862, 1081, 1246
TaqII GACCGA 1 cut(s) 1709
TfiI GAWTC 3 cut(s) 32, 497, 1366
Tru1I TTAA 5 cut(s) 330, 657, 885, 1580, 1710
Tru9I TTAA 5 cut(s) 330, 657, 885, 1580, 1710
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 2 cut(s) 125, 534
TseI GCWGC 6 cut(s) 448, 723, 1457, 1522, 1559, 1601
Tsp45I GTSAC 2 cut(s) 125, 534
TspDTI ATGAA 8 cut(s) 101, 368, 489, 678, 1403, 1407, 1629, 1671
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 4 cut(s) 297, 947, 1040, 1249
XceI RCATGY 1 cut(s) 378
XmiI GTMKAC 2 cut(s) 393, 1553
XspI CTAG 3 cut(s) 453, 1638, 1738
ZraI GACGTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.