Rh4DG217100

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000178
Physical Location & Seq
Reverse (-)
41727018 .. 41728432
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG217100.1

Sequence Viewer

Length: 957 bp
ATGCGATCATCTACTCAAAAGATTTCAAAGCTTGCAAAGTCTTTAAGTAAGCCTACAACACCAGCACAAGCACCGGCAGCCCCATTGCACTCATCAATAGATCAGATTATCACTTCCATTCCTACTCATGTTCCAAAACATCATTGTCCACCTCAAGTTCAATCATCACCACTTATGCAAATGCTAAGATCAGCTACTGTTAAGCAAGGGTCAACTTCTATTAACCAAGGATCAACTTCTATTCAACAAGAATCAACTTCAACTGCAAATGCCACAGAGCCTACTCAAGTTGCTTGTTCCCCCACGGTAGAAGAGGTCACTAATACTAATAGTGGTGCAGTTCGCAAGAAAGTACGTGGTGAGACTCGATGTCTTGAGCTATCCAAGAGGAAGCGTGATGGTGTTCAACTTGATATTGATATTCCAAAGCATACTATGAGAGCTGTAGGAACAAATTGTCAATTCTACATTACTGGTATGGGGTGCTTTGTTCGAAAAAATGTTCCATTGCAAATTAAGAAGTGGTCTGAGCTCTCAAGAGAAGATGTTGCTTTGCTAATTCGTCATGCCCGTGAAAAATTCAAGTTGAGCAATGAGTCTCATGTGGATGAGGCAATTGAGAAACATATGATGAGATATTTTACCACTTGGCGCTATAATTTGCGTAAGAAATTTCTGAAATATGACTCAATAGAGGAAGCTGTAGAAAATCGACCTGAAGATGTGGAAGAGGAAGATTGGAACTATTTGATTGCAAATCTGTGGCAAGATGGAAAGTGGCTGGAAACAAGTGAAAAAAACAAGAAAAACAGAGATAAGTTGGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGCCTTAGAACTGAAAATCGAAATCCTGAGAATGGAGAGGAAGTTGGTCGTATTGACCTTTTCAAGCTCACACGATATAGCGAAAAGAAATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

318

Amino Acids

36.24

Weight (kDa)

9.38

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 244 - 315 3.8e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 2 cut(s) 578, 671
AcuI CTGAAG 1 cut(s) 738
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 890
AgsI TTSAA 7 cut(s) 27, 161, 245, 261, 407, 583, 922
AhdI GACNNNNNGTC 1 cut(s) 369
AluBI AGCT 7 cut(s) 31, 194, 379, 443, 532, 701, 925
AluI AGCT 7 cut(s) 31, 194, 379, 443, 532, 701, 925
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 356, 603
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 578, 671
AspLEI GCGC 1 cut(s) 654
AsuHPI GGTGA 2 cut(s) 159, 371
AsuII TTCGAA 1 cut(s) 493
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 392, 764
BcoDI GTCTC 2 cut(s) 356, 603
BfmI CTRYAG 2 cut(s) 444, 702
BfoI RGCGCY 1 cut(s) 655
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmeRI GACNNNNNGTC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 4 cut(s) 138, 270, 395, 520
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 226, 303
BsaXI ACNNNNNCTCC 2 cut(s) 885, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 890
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 3 cut(s) 83, 506, 598
BseDI CCNNGG 2 cut(s) 226, 303
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 1 cut(s) 890
BseMI GCAATG 3 cut(s) 83, 506, 598
BseMII CTCAG 2 cut(s) 519, 876
BseNI ACTGG 1 cut(s) 478
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 2 cut(s) 357, 858
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 856
BslI CCNNNNNNNGG 1 cut(s) 890
BsmAI GTCTC 2 cut(s) 356, 603
BsmFI GGGAC 1 cut(s) 856
Bsp119I TTCGAA 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 4 cut(s) 5, 100, 188, 230
BspCNI CTCAG 2 cut(s) 520, 877
BspPI GGATC 1 cut(s) 238
BspT104I TTCGAA 1 cut(s) 493
BsrDI GCAATG 3 cut(s) 83, 506, 598
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 226, 303
BssMI GATC 4 cut(s) 5, 100, 188, 230
BssT1I CCWWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 199, 307
Bst6I CTCTTC 2 cut(s) 306, 723
BstBAI YACGTR 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 4 cut(s) 185, 528, 863, 885
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 613
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 4 cut(s) 8, 103, 191, 233
BstMAI GTCTC 2 cut(s) 356, 603
BstMBI GATC 4 cut(s) 5, 100, 188, 230
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSFI CTRYAG 2 cut(s) 444, 702
BstV1I GCAGC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 654
Cfr10I RCCGGY 1 cut(s) 73
Csp6I GTAC 1 cut(s) 353
CviAII CATG 3 cut(s) 128, 566, 602
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 4 cut(s) 185, 528, 863, 885
DpnI GATC 4 cut(s) 7, 102, 190, 232
DpnII GATC 4 cut(s) 5, 100, 188, 230
DraIII CACNNNGTG 1 cut(s) 836
DriI GACNNNNNGTC 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 306, 723
Eam1105I GACNNNNNGTC 1 cut(s) 369
EarI CTCTTC 2 cut(s) 306, 723
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 3 cut(s) 131, 569, 605
FaqI GGGAC 1 cut(s) 856
FatI CATG 3 cut(s) 127, 565, 601
FauNDI CATATG 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 1 cut(s) 78
GlaI GCGC 1 cut(s) 653
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 655
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 654
Hin1II CATG 3 cut(s) 131, 569, 605
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 251, 364, 596, 686
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 159, 371
Hpy166II GTNNAC 2 cut(s) 149, 213
Hpy188I TCNGA 3 cut(s) 105, 529, 678
Hpy188III TCNNGA 3 cut(s) 374, 537, 884
Hpy8I GTNNAC 2 cut(s) 149, 213
HpyCH4III ACNGT 2 cut(s) 199, 307
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 9 cut(s) 35, 88, 178, 266, 338, 511, 755, 839, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 4 cut(s) 185, 528, 863, 885
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 131, 569, 605
HspAI GCGC 1 cut(s) 652
Kzo9I GATC 4 cut(s) 5, 100, 188, 230
LpnPI CCDG 7 cut(s) 75, 87, 459, 729, 767, 825, 897
Lsp1109I GCAGC 1 cut(s) 89
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 7, 102, 190, 232
MboI GATC 4 cut(s) 5, 100, 188, 230
MboII GAAGA 5 cut(s) 323, 554, 731, 740, 746
MfeI CAATTG 1 cut(s) 615
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 8 cut(s) 454, 461, 513, 558, 578, 615, 658, 671
MlyI GAGTC 3 cut(s) 358, 605, 680
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 7 cut(s) 162, 307, 381, 604, 688, 724, 889
MseI TTAA 4 cut(s) 44, 201, 222, 516
MslI CAYNNNNRTG 2 cut(s) 570, 606
MspI CCGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeI CATATG 1 cut(s) 627
NdeII GATC 4 cut(s) 5, 100, 188, 230
NlaIII CATG 3 cut(s) 131, 569, 605
NmuCI GTSAC 1 cut(s) 316
NspV TTCGAA 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 3 cut(s) 358, 604, 680
PpsI GAGTC 3 cut(s) 358, 604, 680
Ppu21I YACGTR 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 2 cut(s) 570, 606
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 4 cut(s) 44, 201, 222, 516
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 4 cut(s) 5, 100, 188, 230
SchI GAGTC 3 cut(s) 358, 605, 680
SduI GDGCHC 1 cut(s) 534
SfcI CTRYAG 2 cut(s) 444, 702
SfuI TTCGAA 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 570, 606
SmlI CTYRAG 4 cut(s) 153, 285, 374, 535
SmoI CTYRAG 4 cut(s) 153, 285, 374, 535
Sse9I AATT 8 cut(s) 454, 461, 513, 558, 578, 615, 658, 671
SstI GAGCTC 1 cut(s) 534
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 199, 307
TaiI ACGT 1 cut(s) 358
TaqI TCGA 4 cut(s) 367, 493, 712, 877
TasI AATT 8 cut(s) 454, 461, 513, 558, 578, 615, 658, 671
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 4 cut(s) 44, 201, 222, 516
Tru9I TTAA 4 cut(s) 44, 201, 222, 516
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 316
XapI RAATTY 2 cut(s) 578, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.