MD15G1435100.v1.1

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000178
Physical Location & Seq
Forward (+)
53519230 .. 53521459
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1435100.v1.1.491

Sequence Viewer

Length: 801 bp
ATGAAATGGGTCTTGGATCAGATTCATAGATCCTACCACAGTTATCGGCATCACCTTAAGAAGACGTGCTATGAAACATGTGAGACGATTGAGGAAGCACGTGAAAAAGTACCACCAAATGTTGCAGAGGATGATTGGCAGTATCTTGTAAATTTGTGGAGCTCACCTGAATGGCAGGTACTTAGTAAGCAAAACAGGGAGAATGGTTCCAAAAATAACATTATTCACACATCTGGCTCCAAGAGTTTCTCGCAAATCCGTGAGGAAGAGAAAAAGAAGACTGGAAATGAGCCTGGCCGTACACTTTTCTGGGAACTCACGCATGTGCGGCCTGATGGACTAGCCGCAAATCCAGCTTCACAGGAGGCATTGTCAAAGCTTAAGAGACTTTATGCTCAAATGGCAGCGGAAAACTCACAGATGACTGAAGATGAGATTTTTGTAAAGGTTTTTGGACCTGAGCGTTCGTCGAGGGTGCGTGGTTATGGGGATGGTGTAACACCTAAAGAGTTAATGGACCCATCGTCGTCGTCGTCGTCTATTGTCAGTGAACTTAAAAGGCAACTTGAAGAATCAAAGCAGCGACAAGAGGAGTCTGAACAAAAAAGTGCTGCTGAGGTACAGAGCTTGAAAGAGCAACTTGGTCGGGTTGAGGGCTTGCTATCAGCGCAAATGAGTCGGTTTGAAGGTCTACTAGTACAGTTGACTAGTCATATGCAACCCCCTTCCCAGATTGAGAGGCCTACAGAAAATCAACTCCCTCGAAATGGTCGGACACGGACTTCCCGACCTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

267

Amino Acids

30.61

Weight (kDa)

8.43

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 43 - 168 6.3e-26 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 691
AciI CCGC 3 cut(s) 328, 345, 407
AclWI GGATC 2 cut(s) 24, 24
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 447
AcvI CACGTG 1 cut(s) 101
AfaI GTAC 5 cut(s) 111, 180, 301, 621, 699
AfiI CCNNNNNNNGG 1 cut(s) 767
AflII CTTAAG 2 cut(s) 56, 380
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 3 cut(s) 569, 631, 686
AhdI GACNNNNNGTC 1 cut(s) 523
AhlI ACTAGT 2 cut(s) 694, 707
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 1 cut(s) 292
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 4 cut(s) 162, 356, 379, 627
AluI AGCT 4 cut(s) 162, 356, 379, 627
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 77, 379
AlwI GGATC 2 cut(s) 24, 24
AoxI GGCC 3 cut(s) 295, 329, 740
ApeKI GCWGC 3 cut(s) 404, 580, 611
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 455, 517
AsuHPI GGTGA 2 cut(s) 44, 156
AvaII GGWCC 2 cut(s) 455, 517
BanII GRGCYC 1 cut(s) 164
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 68, 284
Bbv12I GWGCWC 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 416, 592, 598
BccI CCATC 3 cut(s) 329, 485, 529
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 4 cut(s) 626, 659, 660, 693
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 77, 379
BcuI ACTAGT 2 cut(s) 694, 707
BfaI CTAG 4 cut(s) 341, 695, 708, 792
BfmI CTRYAG 1 cut(s) 744
BfrI CTTAAG 2 cut(s) 56, 380
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 5 cut(s) 329, 345, 405, 581, 612
BlsI GCNGC 5 cut(s) 330, 346, 406, 582, 613
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 2 cut(s) 455, 517
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 455, 517
BmiI GGNNCC 3 cut(s) 208, 238, 519
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 2 cut(s) 68, 284
Bpu10I CCTNAGC 2 cut(s) 459, 615
BsaAI YACGTR 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 767
Bse1I ACTGG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 136, 496
BseLI CCNNNNNNNGG 1 cut(s) 767
BseMII CTCAG 2 cut(s) 450, 606
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 3 cut(s) 416, 592, 598
BshFI GGCC 3 cut(s) 297, 331, 742
BsiHKAI GWGCWC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 767
BsmAI GTCTC 2 cut(s) 77, 379
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 3 cut(s) 297, 331, 742
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 16, 29
BspACI CCGC 3 cut(s) 328, 345, 407
BspANI GGCC 3 cut(s) 297, 331, 742
BspCNI CTCAG 2 cut(s) 451, 607
BspLI GGNNCC 3 cut(s) 208, 238, 519
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 24, 24
BspTI CTTAAG 2 cut(s) 56, 380
BsrI ACTGG 1 cut(s) 286
BssMI GATC 2 cut(s) 16, 29
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 41, 702
Bst6I CTCTTC 1 cut(s) 261
BstAFI CTTAAG 2 cut(s) 56, 380
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 659
BstDEI CTNAG 3 cut(s) 182, 459, 615
BstF5I GGATG 2 cut(s) 136, 496
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 2 cut(s) 19, 32
BstMAI GTCTC 2 cut(s) 77, 379
BstMBI GATC 2 cut(s) 16, 29
BstMWI GCNNNNNNNGC 4 cut(s) 328, 353, 401, 667
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 2 cut(s) 81, 326
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 744
BstV1I GCAGC 3 cut(s) 416, 592, 598
BstV2I GAAGAC 2 cut(s) 68, 284
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 3 cut(s) 297, 331, 742
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 136, 496
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 659
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 455, 517
Csp6I GTAC 5 cut(s) 110, 179, 300, 620, 698
CviAII CATG 2 cut(s) 78, 323
CviQI GTAC 5 cut(s) 110, 179, 300, 620, 698
DdeI CTNAG 3 cut(s) 182, 459, 615
DpnI GATC 2 cut(s) 18, 31
DpnII GATC 2 cut(s) 16, 29
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 455, 517
Eco53kI GAGCTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 447
Eco72I CACGTG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 81, 326
FaiI YATR 8 cut(s) 27, 72, 79, 324, 393, 486, 714, 716
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 2 cut(s) 77, 322
FauNDI CATATG 1 cut(s) 714
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 329, 345, 405, 581, 612
FokI GGATG 2 cut(s) 143, 503
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 5 cut(s) 329, 345, 405, 581, 612
FspBI CTAG 4 cut(s) 341, 695, 708, 792
GlaI GCGC 1 cut(s) 669
GluI GCNGC 5 cut(s) 329, 345, 405, 581, 612
HaeIII GGCC 3 cut(s) 297, 331, 742
HhaI GCGC 1 cut(s) 670
Hin1II CATG 2 cut(s) 81, 326
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 4 cut(s) 22, 572, 593, 676
HphI GGTGA 2 cut(s) 44, 156
Hpy166II GTNNAC 4 cut(s) 302, 551, 692, 705
Hpy188I TCNGA 3 cut(s) 21, 598, 774
Hpy188III TCNNGA 1 cut(s) 786
Hpy8I GTNNAC 4 cut(s) 302, 551, 692, 705
Hpy99I CGWCG 5 cut(s) 472, 529, 532, 535, 538
HpyAV CCTTC 2 cut(s) 680, 735
HpyCH4III ACNGT 2 cut(s) 41, 702
HpyCH4IV ACGT 2 cut(s) 65, 100
HpyCH4V TGCA 2 cut(s) 125, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 353, 401, 667
HpyF3I CTNAG 3 cut(s) 182, 459, 615
HpySE526I ACGT 2 cut(s) 65, 100
Hsp92II CATG 2 cut(s) 81, 326
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 2 cut(s) 16, 29
LmnI GCTCC 2 cut(s) 159, 242
Lsp1109I GCAGC 3 cut(s) 416, 592, 598
LweI GCATC 1 cut(s) 58
MaeI CTAG 4 cut(s) 341, 695, 708, 792
MaeII ACGT 2 cut(s) 65, 100
MaeIII GTNAC 1 cut(s) 496
MalI GATC 2 cut(s) 18, 31
MboI GATC 2 cut(s) 16, 29
MboII GAAGA 5 cut(s) 73, 278, 289, 440, 581
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 602, 685
MmeI TCCRAC 1 cut(s) 752
MseI TTAA 4 cut(s) 57, 381, 512, 555
MslI CAYNNNNRTG 2 cut(s) 169, 323
MspA1I CMGCKG 1 cut(s) 407
MspCI CTTAAG 2 cut(s) 56, 380
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 4 cut(s) 328, 353, 401, 667
NdeI CATATG 1 cut(s) 714
NdeII GATC 2 cut(s) 16, 29
NlaIII CATG 2 cut(s) 81, 326
NlaIV GGNNCC 3 cut(s) 208, 238, 519
NspI RCATGY 2 cut(s) 81, 326
OliI CACNNNNGTG 1 cut(s) 323
PceI AGGCCT 1 cut(s) 742
PciI ACATGT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 3 cut(s) 530, 533, 784
PfeI GAWTC 2 cut(s) 22, 572
PkrI GCNGC 5 cut(s) 330, 346, 406, 582, 613
PleI GAGTC 2 cut(s) 601, 684
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 2 cut(s) 601, 684
Ppu21I YACGTR 1 cut(s) 101
PscI ACATGT 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 292
PspCI CACGTG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 208, 238, 519
PspPI GGNCC 2 cut(s) 455, 517
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 5 cut(s) 111, 180, 301, 621, 699
RsaNI GTAC 5 cut(s) 110, 179, 300, 620, 698
RseI CAYNNNNRTG 2 cut(s) 169, 323
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 4 cut(s) 57, 381, 512, 555
SatI GCNGC 5 cut(s) 329, 345, 405, 581, 612
Sau3AI GATC 2 cut(s) 16, 29
Sau96I GGNCC 2 cut(s) 455, 517
SchI GAGTC 2 cut(s) 602, 685
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 744
SinI GGWCC 2 cut(s) 455, 517
SmiMI CAYNNNNRTG 2 cut(s) 169, 323
SmlI CTYRAG 2 cut(s) 56, 380
SmoI CTYRAG 2 cut(s) 56, 380
SpeI ACTAGT 2 cut(s) 694, 707
Sse9I AATT 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 3 cut(s) 328, 345, 407
SspMI CTAG 4 cut(s) 341, 695, 708, 792
SstI GAGCTC 1 cut(s) 164
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 41, 702
TaiI ACGT 2 cut(s) 68, 103
TaqI TCGA 2 cut(s) 470, 763
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 697
TauI GCSGC 2 cut(s) 331, 347
TfiI GAWTC 2 cut(s) 22, 572
Tru1I TTAA 4 cut(s) 57, 381, 512, 555
Tru9I TTAA 4 cut(s) 57, 381, 512, 555
TscAI CASTG 1 cut(s) 553
TseI GCWGC 3 cut(s) 404, 580, 611
TspDTI ATGAA 3 cut(s) 14, 17, 87
TspGWI ACGGA 2 cut(s) 248, 793
TspRI CASTG 1 cut(s) 553
Vha464I CTTAAG 2 cut(s) 56, 380
VpaK11BI GGWCC 2 cut(s) 455, 517
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 81, 326
XmiI GTMKAC 1 cut(s) 691
XspI CTAG 4 cut(s) 341, 695, 708, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.