Rh1AG062800

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000178
Physical Location & Seq
Forward (+)
10520898 .. 10526633
5736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG062800.1

Sequence Viewer

Length: 1614 bp
ATGGCCAAGAGATCACAAGGTCCTAAATTTTTGCATCAATTGCGAACATCAGCACTTCCACCAAACCACTTGCGAGCATCTGCTGAAAAGGTTTCTAGGATTGTAAAGCCTTTGGATAAACCTACAACACCTGCATGTCCATTGCAATCTTCAACTGAAAAGGTTTCTAGGATTGTAAAGCCTTTGGATAAACCTACAACACCTGCATGTCCATTGCAATCTTCAACTGAAAAGGTTTCTAAGGTTATAAAGCCTTTAGTTAAACCTACAACACTTTCAAGCCCATTGCGGTTATCTCCTAGAAAGCATTCAAAGACACAGCCTTCCACAAATCGATCAACACATCCTCGTCGACCTGCTATGCAGTCATCAAGGACTCCATCTCCTCCTTCTTCTCCACATGTTATGAGATCGTCTCCACTTTCCCATTCACCTCCACATATGCGCAGAGTCTTATCAACCTCTAATCAGCACGCATCAACTCCAAGTGCGCATGAAGAGATAGTTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGAAGAGAACATTGGTGCTGCCCAGAAGAAACGACGTGGTGAGACTCGAGGTCTTGGGACAGCCAAGAAGAAATGTTGTAGTAATCAAATAGAGATTGATATTCCAGAGCATGTAAAACGAGCTGTAGGAGCGAATTGCCAGTCTTACATCACAGAGATAGGCTGCATTGTTAGGCAAAATGCTCCATTACAAGTTAAGCATTGGAGTGGAATTAGCAAGGATGATGTTGCTTCGATGGTTCGTCTTGTCCGTGAGAAATTCAAATTGGGGAATGAACCACACGTGAATGAGGCTATTGAGGCAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTGCATAAGACATTTTTGCAATATGAATCAGTGGAGGAGGCACTTGAGAATAGACCTGAAAATGTGGGAGAAGATGACTGGAATTTTCTCAGCAATTGGTGGCACGATGACGAGTGGCTGGAATTGAGCGGAAAAAATAAGAAAAATAGAGATAAGCTAACAATAACTCATTGTGCTGGGACAAAAGCATTCAGTCGCATTAGATATGAAAATAAAAATCCTGAGACTGGAGAGGAGCTGAGCCGTATTGACATGTTCAAGCTGACAAGATTTAGGGAAAACAAGAAAACATGGGTCGGGGATGTCGCGGAAAATGCTTATGGTGAGATGACAAAATTGAAAAATCCTGAGCAAACAAATGAAGAGTCAGAAAAAGCAATGTCTGATGATGAGATATATGATAAAGTTCTTTCCACAATTGTTGGTCCACCTCCGTTAGGCTACATACGTGGTTTAGGAGCAGGTCCTAAGCCTAAAAATTCAAAGGTCTCCAATAATCATTCACAACTTCAGGAGGCTACACGGAGGGCAGATGAGGCAGAGAGAAGATCTACCCAACTTGCAGAGGAGTTGGAGGCAATGAAGGCTAGTGCAGCTCAACAAAATGAAGAATTAGAGGTAGTGAAGGCTAGTGCAGCTCAACAAAATGAACAGTTAGAAGCAGTTAAAGCAAAGCAGAATGAGACGGACGCTCTTTTGAAAAAATTGCTGGAACAATTTTCCTCTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

537

Amino Acids

60.41

Weight (kDa)

9.46

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 317 - 451 4.5e-17 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AarI CACCTGC 2 cut(s) 139, 211
Acc16I TGCGCA 2 cut(s) 446, 492
Acc36I ACCTGC 4 cut(s) 139, 211, 364, 1331
AccBSI CCGCTC 1 cut(s) 1008
AccI GTMKAC 1 cut(s) 352
AccII CGCG 1 cut(s) 1187
AciI CCGC 3 cut(s) 289, 1008, 1187
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 26, 797, 961, 1357
AcuI CTGAAG 1 cut(s) 1373
AcvI CACGTG 1 cut(s) 823
AfiI CCNNNNNNNGG 2 cut(s) 1106, 1316
AflIII ACRYGT 3 cut(s) 400, 820, 1131
AhdI GACNNNNNGTC 1 cut(s) 588
AjiI CACGTC 1 cut(s) 575
AjuI GAANNNNNNNTTGG 4 cut(s) 534, 566, 788, 820
AluBI AGCT 6 cut(s) 662, 1036, 1117, 1141, 1475, 1517
AluI AGCT 6 cut(s) 662, 1036, 1117, 1141, 1475, 1517
Alw26I GTCTC 5 cut(s) 420, 575, 1097, 1372, 1556
Ama87I CYCGRG 1 cut(s) 585
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 557, 702, 1472, 1514
ApoI RAATTY 4 cut(s) 26, 797, 961, 1357
ArsI GACNNNNNNTTYG 4 cut(s) 665, 697, 1229, 1261
Asp700I GAANNNNTTC 1 cut(s) 307
AspLEI GCGC 2 cut(s) 447, 493
AspS9I GGNCC 3 cut(s) 20, 1304, 1343
AsuHPI GGTGA 3 cut(s) 423, 590, 1214
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 3 cut(s) 20, 1304, 1343
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 823
BbvI GCAGC 4 cut(s) 544, 689, 1484, 1526
BccI CCATC 2 cut(s) 388, 769
BceAI ACGGC 1 cut(s) 1107
BcoDI GTCTC 5 cut(s) 420, 575, 1097, 1372, 1556
BfaI CTAG 6 cut(s) 96, 168, 300, 1467, 1509, 1605
BfmI CTRYAG 1 cut(s) 663
BfuAI ACCTGC 4 cut(s) 139, 211, 364, 1331
BglII AGATCT 1 cut(s) 1427
BisI GCNGC 4 cut(s) 558, 703, 1473, 1515
BlpI GCTNAGC 1 cut(s) 1118
BlsI GCNGC 4 cut(s) 559, 704, 1474, 1516
Bme18I GGWCC 3 cut(s) 20, 1304, 1343
BmeRI GACNNNNNGTC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 585
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 20, 1304, 1343
BmsI GCATC 3 cut(s) 43, 86, 485
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 1128
Bpu10I CCTNAGC 2 cut(s) 1227, 1347
Bpu1102I GCTNAGC 1 cut(s) 1118
BpuEI CTTGAG 2 cut(s) 501, 944
Bsa29I ATCGAT 1 cut(s) 334
BsaAI YACGTR 2 cut(s) 823, 1328
BsaI GGTCTC 1 cut(s) 1372
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 1106, 1316
Bse1I ACTGG 3 cut(s) 679, 962, 1111
Bse3DI GCAATG 5 cut(s) 140, 212, 284, 1263, 1464
BseCI ATCGAT 1 cut(s) 334
BseGI GGATG 4 cut(s) 343, 526, 766, 1186
BseLI CCNNNNNNNGG 2 cut(s) 1106, 1316
BseMI GCAATG 5 cut(s) 140, 212, 284, 1263, 1464
BseMII CTCAG 4 cut(s) 982, 1092, 1109, 1218
BseNI ACTGG 3 cut(s) 679, 962, 1111
BseRI GAGGAG 4 cut(s) 375, 929, 1127, 1460
BseXI GCAGC 4 cut(s) 544, 689, 1484, 1526
BseYI CCCAGC 1 cut(s) 1055
BsgI GTGCAG 2 cut(s) 1491, 1533
Bsh1236I CGCG 1 cut(s) 1187
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 585
BslFI GGGAC 2 cut(s) 610, 1072
BslI CCNNNNNNNGG 2 cut(s) 1106, 1316
BsmAI GTCTC 5 cut(s) 420, 575, 1097, 1372, 1556
BsmBI CGTCTC 2 cut(s) 420, 1556
BsmFI GGGAC 2 cut(s) 610, 1072
BsmI GAATGC 2 cut(s) 307, 1067
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 1372
BsoBI CYCGRG 1 cut(s) 585
Bsp143I GATC 4 cut(s) 11, 335, 410, 1427
Bsp1720I GCTNAGC 1 cut(s) 1118
BspACI CCGC 3 cut(s) 289, 1008, 1187
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 981, 1093, 1110, 1219
BspDI ATCGAT 1 cut(s) 334
BspFNI CGCG 1 cut(s) 1187
BspMI ACCTGC 4 cut(s) 139, 211, 364, 1331
BspTNI GGTCTC 1 cut(s) 1372
BsrBI CCGCTC 1 cut(s) 1008
BsrDI GCAATG 5 cut(s) 140, 212, 284, 1263, 1464
BsrI ACTGG 3 cut(s) 679, 962, 1111
BssMI GATC 4 cut(s) 11, 335, 410, 1427
Bst4CI ACNGT 1 cut(s) 1533
Bst6I CTCTTC 3 cut(s) 492, 537, 1236
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBAI YACGTR 2 cut(s) 823, 1328
BstC8I GCNNGC 2 cut(s) 75, 474
BstDEI CTNAG 7 cut(s) 240, 538, 968, 1101, 1118, 1227, 1347
BstENI CCTNNNNNAGG 1 cut(s) 1314
BstF5I GGATG 4 cut(s) 343, 526, 766, 1186
BstFNI CGCG 1 cut(s) 1187
BstHHI GCGC 2 cut(s) 447, 493
BstKTI GATC 4 cut(s) 14, 338, 413, 1430
BstMAI GTCTC 5 cut(s) 420, 575, 1097, 1372, 1556
BstMBI GATC 4 cut(s) 11, 335, 410, 1427
BstMWI GCNNNNNNNGC 9 cut(s) 40, 668, 839, 1193, 1415, 1463, 1472, 1514, 1547
BstNSI RCATGY 5 cut(s) 138, 210, 404, 653, 1135
BstSFI CTRYAG 1 cut(s) 663
BstUI CGCG 1 cut(s) 1187
BstV1I GCAGC 4 cut(s) 544, 689, 1484, 1526
BstX2I RGATCY 1 cut(s) 1427
BstYI RGATCY 1 cut(s) 1427
Bsu15I ATCGAT 1 cut(s) 334
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 334
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 4 cut(s) 343, 526, 766, 1186
BtsIMutI CAGTG 1 cut(s) 915
BveI ACCTGC 4 cut(s) 139, 211, 364, 1331
Cac8I GCNNGC 2 cut(s) 75, 474
CfoI GCGC 2 cut(s) 447, 493
Cfr13I GGNCC 3 cut(s) 20, 1304, 1343
ClaI ATCGAT 1 cut(s) 334
CseI GACGC 1 cut(s) 1577
CspCI CAANNNNNGTGG 2 cut(s) 1282, 1317
CviAII CATG 8 cut(s) 135, 207, 401, 494, 650, 847, 1132, 1170
DdeI CTNAG 7 cut(s) 240, 538, 968, 1101, 1118, 1227, 1347
DpnI GATC 4 cut(s) 13, 337, 412, 1429
DpnII GATC 4 cut(s) 11, 335, 410, 1427
DriI GACNNNNNGTC 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 492, 537, 1236
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 3 cut(s) 492, 537, 1236
Eco31I GGTCTC 1 cut(s) 1372
Eco47I GGWCC 3 cut(s) 20, 1304, 1343
Eco57I CTGAAG 1 cut(s) 1373
Eco72I CACGTG 1 cut(s) 823
Eco88I CYCGRG 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 1314
EcoO109I RGGNCCY 2 cut(s) 20, 1343
Esp3I CGTCTC 2 cut(s) 420, 1556
FaeI CATG 8 cut(s) 138, 210, 404, 497, 653, 850, 1135, 1173
FaqI GGGAC 2 cut(s) 610, 1072
FatI CATG 8 cut(s) 134, 206, 400, 493, 649, 846, 1131, 1169
FauNDI CATATG 1 cut(s) 441
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 558, 703, 1473, 1515
FokI GGATG 4 cut(s) 330, 513, 773, 1193
Fsp4HI GCNGC 4 cut(s) 558, 703, 1473, 1515
FspAI RTGCGCAY 1 cut(s) 492
FspBI CTAG 6 cut(s) 96, 168, 300, 1467, 1509, 1605
FspI TGCGCA 2 cut(s) 446, 492
GlaI GCGC 2 cut(s) 446, 492
GluI GCNGC 4 cut(s) 558, 703, 1473, 1515
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 1577
HhaI GCGC 2 cut(s) 447, 493
Hin1II CATG 8 cut(s) 138, 210, 404, 497, 653, 850, 1135, 1173
Hin6I GCGC 2 cut(s) 445, 491
HinP1I GCGC 2 cut(s) 445, 491
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 6 cut(s) 376, 450, 509, 583, 905, 1244
HphI GGTGA 3 cut(s) 423, 590, 1214
Hpy166II GTNNAC 2 cut(s) 353, 1307
Hpy188I TCNGA 2 cut(s) 1249, 1264
Hpy188III TCNNGA 4 cut(s) 644, 1100, 1226, 1391
Hpy8I GTNNAC 2 cut(s) 353, 1307
Hpy99I CGWCG 2 cut(s) 354, 576
HpyAV CCTTC 4 cut(s) 333, 399, 1456, 1498
HpyCH4III ACNGT 1 cut(s) 1533
HpyCH4IV ACGT 3 cut(s) 574, 822, 1327
HpyF10VI GCNNNNNNNGC 9 cut(s) 40, 668, 839, 1193, 1415, 1463, 1472, 1514, 1547
HpyF3I CTNAG 7 cut(s) 240, 538, 968, 1101, 1118, 1227, 1347
HpySE526I ACGT 3 cut(s) 574, 822, 1327
Hsp92II CATG 8 cut(s) 138, 210, 404, 497, 653, 850, 1135, 1173
HspAI GCGC 2 cut(s) 445, 491
Kzo9I GATC 4 cut(s) 11, 335, 410, 1427
LmnI GCTCC 4 cut(s) 668, 727, 1114, 1337
Lsp1109I GCAGC 4 cut(s) 544, 689, 1484, 1526
LweI GCATC 3 cut(s) 43, 86, 485
MaeI CTAG 6 cut(s) 96, 168, 300, 1467, 1509, 1605
MaeII ACGT 3 cut(s) 574, 822, 1327
MalI GATC 4 cut(s) 13, 337, 412, 1429
MbiI CCGCTC 1 cut(s) 1008
MboI GATC 4 cut(s) 11, 335, 410, 1427
MfeI CAATTG 3 cut(s) 38, 973, 1296
MflI RGATCY 1 cut(s) 1427
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 370, 459, 577, 1253
MmeI TCCRAC 1 cut(s) 1431
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 307
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 261, 735, 1545
MslI CAYNNNNRTG 4 cut(s) 133, 205, 744, 825
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 3 cut(s) 38, 973, 1296
Mva1269I GAATGC 2 cut(s) 307, 1067
MvnI CGCG 1 cut(s) 1187
MwoI GCNNNNNNNGC 9 cut(s) 40, 668, 839, 1193, 1415, 1463, 1472, 1514, 1547
NdeI CATATG 1 cut(s) 441
NdeII GATC 4 cut(s) 11, 335, 410, 1427
NlaIII CATG 8 cut(s) 138, 210, 404, 497, 653, 850, 1135, 1173
NsbI TGCGCA 2 cut(s) 446, 492
NspI RCATGY 5 cut(s) 138, 210, 404, 653, 1135
PaeR7I CTCGAG 1 cut(s) 585
PaqCI CACCTGC 2 cut(s) 139, 211
PciI ACATGT 2 cut(s) 400, 1131
PcsI WCGNNNNNNNCGW 1 cut(s) 787
PctI GAATGC 2 cut(s) 307, 1067
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 509, 905
PkrI GCNGC 4 cut(s) 559, 704, 1474, 1516
PleI GAGTC 4 cut(s) 370, 458, 577, 1252
PmaCI CACGTG 1 cut(s) 823
PmlI CACGTG 1 cut(s) 823
PpsI GAGTC 4 cut(s) 370, 458, 577, 1252
Ppu21I YACGTR 2 cut(s) 823, 1328
PpuMI RGGWCCY 2 cut(s) 20, 1343
PscI ACATGT 2 cut(s) 400, 1131
PsiI TTATAA 1 cut(s) 248
Psp5II RGGWCCY 2 cut(s) 20, 1343
PspCI CACGTG 1 cut(s) 823
PspFI CCCAGC 1 cut(s) 1055
PspPI GGNCC 3 cut(s) 20, 1304, 1343
PspPPI RGGWCCY 2 cut(s) 20, 1343
PspXI VCTCGAGB 1 cut(s) 585
PsuI RGATCY 1 cut(s) 1427
RseI CAYNNNNRTG 4 cut(s) 133, 205, 744, 825
SalI GTCGAC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 261, 735, 1545
SatI GCNGC 4 cut(s) 558, 703, 1473, 1515
Sau3AI GATC 4 cut(s) 11, 335, 410, 1427
Sau96I GGNCC 3 cut(s) 20, 1304, 1343
SchI GAGTC 4 cut(s) 370, 459, 577, 1253
SfaNI GCATC 3 cut(s) 43, 86, 485
SfcI CTRYAG 1 cut(s) 663
Sfr274I CTCGAG 1 cut(s) 585
SinI GGWCC 3 cut(s) 20, 1304, 1343
SlaI CTCGAG 1 cut(s) 585
SmiMI CAYNNNNRTG 4 cut(s) 133, 205, 744, 825
SmlI CTYRAG 3 cut(s) 516, 585, 923
SmoI CTYRAG 3 cut(s) 516, 585, 923
SsiI CCGC 3 cut(s) 289, 1008, 1187
SspMI CTAG 6 cut(s) 96, 168, 300, 1467, 1509, 1605
TaaI ACNGT 1 cut(s) 1533
TaiI ACGT 3 cut(s) 577, 825, 1330
TaqI TCGA 4 cut(s) 334, 352, 586, 773
TfiI GAWTC 2 cut(s) 509, 905
Tru1I TTAA 3 cut(s) 261, 735, 1545
Tru9I TTAA 3 cut(s) 261, 735, 1545
TscAI CASTG 1 cut(s) 915
TseI GCWGC 4 cut(s) 557, 702, 1472, 1514
TspDTI ATGAA 9 cut(s) 510, 828, 863, 918, 1101, 1254, 1475, 1500, 1542
TspGWI ACGGA 4 cut(s) 779, 1302, 1417, 1580
TspRI CASTG 1 cut(s) 915
VpaK11BI GGWCC 3 cut(s) 20, 1304, 1343
XagI CCTNNNNNAGG 1 cut(s) 1314
XapI RAATTY 4 cut(s) 26, 797, 961, 1357
XceI RCATGY 5 cut(s) 138, 210, 404, 653, 1135
XhoI CTCGAG 1 cut(s) 585
XmiI GTMKAC 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 307
XspI CTAG 6 cut(s) 96, 168, 300, 1467, 1509, 1605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.