Rh4CG071400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000178
Physical Location & Seq
Forward (+)
13206847 .. 13208491
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG071400.1

Sequence Viewer

Length: 267 bp
ATGCGCCTATGGGTCGGGGATGTCGCCGAAAATGCTTATGGTGAGATGACAAAATTAAAAAATCTTGAGCAAACAAATGAAGACTCGGAAAAAGAAATGTTTGATGATGAGATATATGATAAATTTCTTTCCACAATTGTTGGTCCACCTCGGTCAGGCTACATATGTGGCTTAGGAGCTGGTCCTAAGCCTAAAAATTCGAAAGTCTCCAATAATCATTCACAACTTCAGGAGGCTACACGTAGGGCAGCTGAGGCAGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.86

Weight (kDa)

5.13

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 122, 196
AcuI CTGAAG 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 239
AluBI AGCT 2 cut(s) 179, 251
AluI AGCT 2 cut(s) 179, 251
Alw26I GTCTC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 122, 196
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 143, 182
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 200
AvaII GGWCC 2 cut(s) 143, 182
BbsI GAAGAC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 211
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme18I GGWCC 2 cut(s) 143, 182
BmgT120I GGNCC 2 cut(s) 143, 182
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 3 cut(s) 172, 186, 252
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 244
BspT104I TTCGAA 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 172, 186, 252
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 32, 254
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 25
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 143, 182
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviJI RGCY 6 cut(s) 159, 171, 179, 190, 236, 251
CviKI_1 RGCY 6 cut(s) 159, 171, 179, 190, 236, 251
DdeI CTNAG 3 cut(s) 172, 186, 252
Eco47I GGWCC 2 cut(s) 143, 182
Eco57I CTGAAG 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 153
FaiI YATR 6 cut(s) 10, 39, 115, 117, 164, 166
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 83
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 65, 230
Hpy8I GTNNAC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 254
HpyF3I CTNAG 3 cut(s) 172, 186, 252
HpySE526I ACGT 1 cut(s) 241
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 3 cut(s) 141, 165, 215
Lsp1109I GCAGC 1 cut(s) 260
MaeII ACGT 1 cut(s) 241
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 135
MluCI AATT 4 cut(s) 53, 122, 135, 196
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 3 cut(s) 159, 226, 247
MseI TTAA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 251
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 32, 254
NdeI CATATG 1 cut(s) 164
NspV TTCGAA 1 cut(s) 200
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 242
PspPI GGNCC 2 cut(s) 143, 182
PvuII CAGCTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 143, 182
SchI GAGTC 1 cut(s) 77
SetI ASST 4 cut(s) 151, 181, 244, 253
SfuI TTCGAA 1 cut(s) 200
SgeI CNNG 8 cut(s) 28, 77, 97, 162, 168, 192, 242, 252
SinI GGWCC 2 cut(s) 143, 182
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 53, 122, 135, 196
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 200
TaqII GACCGA 1 cut(s) 141
TasI AATT 4 cut(s) 53, 122, 135, 196
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 143, 182
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 2 cut(s) 122, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.