Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Forward (+)

25787969 .. 25791197

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64520.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGAGATGACGAAGCGCGTAGTTGGATTCGCGGAGACGAGACGGCGAAGCAGATGTTATCAAGGGTTCTTAAGGACCGTGCGTTCCTGCTTATTCCGCCACTTCACCGTGTACCTTTACGCGCCGGGAACGTAGTCGAGATCACCGGCGCATCTACGTCAGCGAAAACTCAAATCCTGATTCAAGCTGCGATCAGTTGCATTCTTCCTAAAACGTGGAACGGCATTCACTATGGAGGATTAGGGAAACTGGTTTTGTTTCTCGATTTGGATTGTCGCTTTGATGTTCTCCGGTTATCTCAAATGCTCAAGCATCGTCTTCTTCAAGCTAACTGGTTAGGAAATGGAGCATGGTGGCAACTTGAGGAGTCAAATGTTAAGAGTTGCAAATCTGCAGAAGAGAAGACAAAGACTGTGTTTGATGAGGAGTTATATGCTTCATGCATGAAAAGGTTTCTGTATGTTCGTTGCTATGATAGTCTTGAACTATTGTCCAGTCTCAAGACATTGCATTACCGGATCCAACAACAGGAGGCGTGTGGAAGTCAAGTCGGAGTGCTTATGATTGACAGCATTGGTGCTTTTCACTGGACTGATCGTCTATCATCATCATTGGCATTGGAGACACATAACAGGAAGAGTTTGTCCCTTACGAATGTGGTGGAGACGATAGTGCAAGAGTTGAAGAAGCTCCTGCTGGTACATTCGCTGGTAGTACTTGCCACTAAGGGTACAATTTACGAAGAAAAGTACCCAGCAAATGAGAATAATCGGAAGGTCTCCTCAAACGACCATTTTTCAGGGAATGTTGCAAGTAAAGCTCAGCAACCTCCATTTCGTGAATTCATGCCTTCTTCTTGGCAGGCATTTGTAACACATAAGATCATCATACGAAAATCAGCTGATTATCAGTCTTTACAAACGGGACAACAAAATTTGTTGGCATATTCACTTGAATGGTTACAACCGCAACTTAGTAGAATAGACCGCTTCATAGTAGACGATGTAAGGAAACTTACGACCATAAAACCATTTTACTCTAAACTATTACTCATATATATTGTTATTCCTGCTTCATCATCTCATGCAGTCTGGTATTGTCATTGTCTCGTGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

372

Amino Acids

42.36

Weight (kDa)

9.06

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	3 cut(s)	19, 33, 123
AciI	CCGC	4 cut(s)	33, 98, 968, 988
AclWI	GGATC	2 cut(s)	514, 527
AcsI	RAATTY	2 cut(s)	842, 934
AfaI	GTAC	5 cut(s)	114, 702, 717, 733, 752
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	185, 326, 485, 685, 956
AhdI	GACNNNNNGTC	1 cut(s)	597
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	5 cut(s)	188, 329, 691, 821, 902
AluI	AGCT	5 cut(s)	188, 329, 691, 821, 902
Alw26I	GTCTC	7 cut(s)	30, 35, 503, 617, 659, 784, 1112
AlwI	GGATC	2 cut(s)	514, 527
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	842, 934
AspLEI	GCGC	3 cut(s)	19, 125, 152
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	98, 136
AvaII	GGWCC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	1109
BbsI	GAAGAC	2 cut(s)	311, 410
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	2 cut(s)	60, 238
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	7 cut(s)	30, 35, 503, 617, 659, 784, 1112
BfaI	CTAG	1 cut(s)	1117
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	161, 322
BpiI	GAAGAC	2 cut(s)	311, 410
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	3 cut(s)	293, 383, 485
BpuMI	CCSGG	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	784
BsaWI	WCCGGW	2 cut(s)	291, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	4 cut(s)	255, 338, 495, 593
Bse3DI	GCAATG	1 cut(s)	506
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	836
BseNI	ACTGG	4 cut(s)	255, 338, 495, 593
BseRI	GAGGAG	3 cut(s)	380, 440, 772
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	754
Bsh1236I	CGCG	3 cut(s)	19, 33, 123
BsiSI	CCGG	4 cut(s)	126, 147, 292, 517
BslFI	GGGAC	2 cut(s)	631, 939
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	7 cut(s)	30, 35, 503, 617, 659, 784, 1112
BsmBI	CGTCTC	3 cut(s)	30, 35, 659
BsmFI	GGGAC	2 cut(s)	631, 939
BsmI	GAATGC	2 cut(s)	201, 225
Bso31I	GGTCTC	1 cut(s)	784
Bsp143I	GATC	5 cut(s)	141, 192, 519, 595, 882
Bsp1720I	GCTNAGC	1 cut(s)	822
BspACI	CCGC	4 cut(s)	33, 98, 968, 988
BspCNI	CTCAG	1 cut(s)	835
BspFNI	CGCG	3 cut(s)	19, 33, 123
BspLI	GGNNCC	1 cut(s)	521
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	514, 527
BspTI	CTTAAG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	255, 338, 495, 593
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	5 cut(s)	141, 192, 519, 595, 882
BssSI	CACGAG	1 cut(s)	1109
Bst2BI	CACGAG	1 cut(s)	1109
Bst4CI	ACNGT	3 cut(s)	80, 110, 415
Bst6I	CTCTTC	2 cut(s)	393, 632
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	864
BstDEI	CTNAG	3 cut(s)	726, 822, 974
BstFNI	CGCG	3 cut(s)	19, 33, 123
BstHHI	GCGC	3 cut(s)	19, 125, 152
BstKTI	GATC	5 cut(s)	144, 195, 522, 598, 885
BstMAI	GTCTC	7 cut(s)	30, 35, 503, 617, 659, 784, 1112
BstMBI	GATC	5 cut(s)	141, 192, 519, 595, 882
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 818
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	3 cut(s)	19, 33, 123
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	2 cut(s)	311, 410
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	864
CfoI	GCGC	3 cut(s)	19, 125, 152
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	5 cut(s)	113, 701, 716, 732, 751
CviAII	CATG	5 cut(s)	351, 441, 445, 847, 1085
CviJI	RGCY	5 cut(s)	188, 329, 691, 821, 902
CviKI_1	RGCY	5 cut(s)	188, 329, 691, 821, 902
CviQI	GTAC	5 cut(s)	113, 701, 716, 732, 751
DdeI	CTNAG	3 cut(s)	726, 822, 974
DpnI	GATC	5 cut(s)	143, 194, 521, 597, 884
DpnII	GATC	5 cut(s)	141, 192, 519, 595, 882
DriI	GACNNNNNGTC	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	393, 632
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EarI	CTCTTC	2 cut(s)	393, 632
EciI	GGCGGA	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	842
EcoT22I	ATGCAT	1 cut(s)	446
Esp3I	CGTCTC	3 cut(s)	30, 35, 659
FaeI	CATG	5 cut(s)	354, 444, 448, 850, 1088
FaqI	GGGAC	2 cut(s)	631, 939
FatI	CATG	5 cut(s)	350, 440, 444, 846, 1084
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	1117
GlaI	GCGC	3 cut(s)	18, 124, 151
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	758
HapII	CCGG	4 cut(s)	126, 147, 292, 517
HhaI	GCGC	3 cut(s)	19, 125, 152
Hin1II	CATG	5 cut(s)	354, 444, 448, 850, 1088
Hin6I	GCGC	3 cut(s)	17, 123, 150
HinP1I	GCGC	3 cut(s)	17, 123, 150
HinfI	GANTC	3 cut(s)	28, 181, 368
HpaII	CCGG	4 cut(s)	126, 147, 292, 517
HphI	GGTGA	2 cut(s)	98, 136
Hpy166II	GTNNAC	2 cut(s)	113, 1000
Hpy188I	TCNGA	2 cut(s)	554, 774
Hpy188III	TCNNGA	7 cut(s)	139, 178, 263, 482, 502, 839, 1111
Hpy8I	GTNNAC	2 cut(s)	113, 1000
HpyAV	CCTTC	2 cut(s)	769, 861
HpyCH4III	ACNGT	3 cut(s)	80, 110, 415
HpyCH4IV	ACGT	3 cut(s)	132, 158, 215
HpyCH4V	TGCA	8 cut(s)	201, 387, 395, 444, 511, 676, 812, 1088
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 818
HpyF3I	CTNAG	3 cut(s)	726, 822, 974
HpySE526I	ACGT	3 cut(s)	132, 158, 215
Hsp92II	CATG	5 cut(s)	354, 444, 448, 850, 1088
HspAI	GCGC	3 cut(s)	17, 123, 150
Kzo9I	GATC	5 cut(s)	141, 192, 519, 595, 882
LmnI	GCTCC	2 cut(s)	347, 696
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	2 cut(s)	161, 322
MaeI	CTAG	1 cut(s)	1117
MaeII	ACGT	3 cut(s)	132, 158, 215
MaeIII	GTNAC	3 cut(s)	871, 960, 1111
MalI	GATC	5 cut(s)	143, 194, 521, 597, 884
MboI	GATC	5 cut(s)	141, 192, 519, 595, 882
MboII	GAAGA	9 cut(s)	197, 311, 314, 410, 415, 649, 697, 755, 846
MflI	RGATCY	1 cut(s)	519
MluCI	AATT	3 cut(s)	735, 842, 934
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	3 cut(s)	5, 532, 547
MnlI	CCTC	6 cut(s)	230, 358, 418, 526, 793, 840
Mph1103I	ATGCAT	1 cut(s)	446
MseI	TTAA	2 cut(s)	72, 378
MslI	CAYNNNNRTG	1 cut(s)	955
MspA1I	CMGCKG	1 cut(s)	902
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	4 cut(s)	126, 147, 292, 517
MspR9I	CCNGG	1 cut(s)	127
Mva1269I	GAATGC	2 cut(s)	201, 225
MvnI	CGCG	3 cut(s)	19, 33, 123
MwoI	GCNNNNNNNGC	2 cut(s)	97, 818
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	5 cut(s)	141, 192, 519, 595, 882
NlaIII	CATG	5 cut(s)	354, 444, 448, 850, 1088
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	1111
NsiI	ATGCAT	1 cut(s)	446
PctI	GAATGC	2 cut(s)	201, 225
PfeI	GAWTC	2 cut(s)	28, 181
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	519
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	5 cut(s)	114, 702, 717, 733, 752
RsaNI	GTAC	5 cut(s)	113, 701, 716, 732, 751
RseI	CAYNNNNRTG	1 cut(s)	955
SaqAI	TTAA	2 cut(s)	72, 378
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	5 cut(s)	141, 192, 519, 595, 882
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	161, 322
SfcI	CTRYAG	1 cut(s)	393
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	955
SmlI	CTYRAG	4 cut(s)	71, 308, 362, 500
SmoI	CTYRAG	4 cut(s)	71, 308, 362, 500
Sse9I	AATT	3 cut(s)	735, 842, 934
SsiI	CCGC	4 cut(s)	33, 98, 968, 988
SspMI	CTAG	1 cut(s)	1117
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	3 cut(s)	80, 110, 415
TaiI	ACGT	3 cut(s)	135, 161, 218
TaqI	TCGA	2 cut(s)	138, 264
TasI	AATT	3 cut(s)	735, 842, 934
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	2 cut(s)	28, 181
Tru1I	TTAA	2 cut(s)	72, 378
Tru9I	TTAA	2 cut(s)	72, 378
TscAI	CASTG	1 cut(s)	593
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	5 cut(s)	429, 461, 835, 982, 1065
TspRI	CASTG	1 cut(s)	593
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	842, 934
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	1 cut(s)	1117
ZrmI	AGTACT	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.