Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Forward (+)

64206210 .. 64206657

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG440100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGGCCAAACGGTGGATCGACGGAGACGAGACCGCCGCCGAGATGCTTTCTAGGGTTTCATCAGAGCGGCCCTTCTTGCTTCTTCCGCCTCTCCACCGCGTTCCTCTCCGCGTCGGCAATGTGGTCGAGCTCGCCGGCCCCTCTTCTTCAGCCAAAACCCAGATCCTGATTCAGGCTGCTGTGAATTGCATTCTTCCTAGGGAGTGGAATGGTGTGCACTATGGGGGTTTGGAGCGTTTGGTGATGTTCATTGACTTGGACTGTCGCTTCGATATATTGCGCCTTTCGGAAATGCTAAAGCACAAGATTATGGAACCCAATGGTATTTGTTCATATGGATTAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

117

Amino Acids

13.09

Weight (kDa)

6.28

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	70
AccII	CGCG	2 cut(s)	102, 114
AciI	CCGC	7 cut(s)	5, 36, 39, 70, 89, 100, 112
AclWI	GGATC	2 cut(s)	26, 160
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	15, 175
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	2 cut(s)	135, 222
Alw26I	GTCTC	2 cut(s)	21, 26
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	26, 160
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	6, 71, 139
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspA2I	CCTAGG	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	72, 140
AsuHPI	GGTGA	1 cut(s)	256
AvrII	CCTAGG	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	135, 222
BbvI	GCAGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcoDI	GTCTC	2 cut(s)	21, 26
BfaI	CTAG	2 cut(s)	54, 201
BisI	GCNGC	4 cut(s)	6, 39, 71, 180
BlnI	CCTAGG	1 cut(s)	200
BlsI	GCNGC	4 cut(s)	7, 40, 72, 181
BmgT120I	GGNCC	2 cut(s)	72, 140
BmiI	GGNNCC	2 cut(s)	142, 318
BmsI	GCATC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 175
Bse118I	RCCGGY	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	15, 175
BseMI	GCAATG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	2 cut(s)	102, 114
BshFI	GGCC	3 cut(s)	8, 73, 141
BsiHKAI	GWGCWC	2 cut(s)	135, 222
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	15, 175
BsmAI	GTCTC	2 cut(s)	21, 26
BsmBI	CGTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	8, 73, 141
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	135, 222
Bsp143I	GATC	2 cut(s)	18, 165
BspACI	CCGC	7 cut(s)	5, 36, 39, 70, 89, 100, 112
BspANI	GGCC	3 cut(s)	8, 73, 141
BspFNI	CGCG	2 cut(s)	102, 114
BspLI	GGNNCC	2 cut(s)	142, 318
BspPI	GGATC	2 cut(s)	26, 160
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	18, 165
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	15, 266
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	135, 139
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstFNI	CGCG	2 cut(s)	102, 114
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	21, 168
BstMAI	GTCTC	2 cut(s)	21, 26
BstMBI	GATC	2 cut(s)	18, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 88
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	2 cut(s)	102, 114
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	8, 73, 141
Cac8I	GCNNGC	2 cut(s)	135, 139
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	72, 140
CseI	GACGC	1 cut(s)	103
CviJI	RGCY	6 cut(s)	8, 73, 133, 141, 155, 179
CviKI_1	RGCY	6 cut(s)	8, 73, 133, 141, 155, 179
DpnI	GATC	2 cut(s)	20, 167
DpnII	GATC	2 cut(s)	18, 165
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	21
FaiI	YATR	5 cut(s)	225, 278, 314, 337, 339
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	6, 39, 71, 180
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	4 cut(s)	6, 39, 71, 180
FspBI	CTAG	2 cut(s)	54, 201
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	4 cut(s)	6, 39, 71, 180
HaeIII	GGCC	3 cut(s)	8, 73, 141
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	67, 292
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	2 cut(s)	26, 119
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	15, 266
HpyCH4V	TGCA	2 cut(s)	192, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 88
HspAI	GCGC	1 cut(s)	283
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	18, 165
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	4 cut(s)	151, 161, 176, 182
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	54, 201
MalI	GATC	2 cut(s)	20, 167
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	2 cut(s)	18, 165
MboII	GAAGA	4 cut(s)	77, 138, 141, 188
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	135, 222
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	3 cut(s)	102, 117, 154
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	2 cut(s)	344, 352
MspI	CCGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	192
MvnI	CGCG	2 cut(s)	102, 114
MwoI	GCNNNNNNNGC	2 cut(s)	79, 88
NaeI	GCCGGC	1 cut(s)	139
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	2 cut(s)	18, 165
NgoMIV	GCCGGC	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	142, 318
NmeAIII	GCCGAG	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	7, 40, 72, 181
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	142, 318
PspPI	GGNCC	2 cut(s)	72, 140
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	344, 352
SatI	GCNGC	4 cut(s)	6, 39, 71, 180
Sau3AI	GATC	2 cut(s)	18, 165
Sau96I	GGNCC	2 cut(s)	72, 140
SduI	GDGCHC	2 cut(s)	135, 222
SetI	ASST	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	36
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	7 cut(s)	5, 36, 39, 70, 89, 100, 112
SspMI	CTAG	2 cut(s)	54, 201
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	15, 266
TaqI	TCGA	3 cut(s)	21, 129, 273
TasI	AATT	1 cut(s)	187
TauI	GCSGC	3 cut(s)	8, 41, 73
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	344, 352
Tru9I	TTAA	2 cut(s)	344, 352
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	51, 241, 324
TspGWI	ACGGA	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	15
VneI	GTGCAC	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	200
XspI	CTAG	2 cut(s)	54, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.