FvH4_4g36590

DNA repair protein XRCC2 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
33465207 .. 33467682
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36590.t1

Sequence Viewer

Length: 1167 bp
ATGGCGGCCAAACGGTGGATCGACGGAGACGAGACCGCCGCCGAGATGCTCTCTAGGGTTTCATCAGAGCGACCATTCTTGCTTCTTCCGCCCCTCCACCGCGTTCCTCTCCGCGTCGGCAATGTGGTCGAGCTCGCCGGCCCCTCTTCTTCAGCCAAAACCCAGATCCTTATTCAGGCTGCTGTGAATTGCATTCTTCCTAAGGAGTGGAATGGTGTGCACTATGGGGGTTTGGAGCGTTTGGTCATGTTTATTGACTTGGACTGTCGATTCGATGTTACGCGCCTTTCGGAAATGCTGAAGCACAGGATCATGGAACCCATTGGGTCAATGTATGATCATGAGGAATTGTATGCTGCGTGCATGAGTCGGTTCTTGTATGTCCGGTGCTACGACAGTCTTGAATTTCTTGCCACTCTAAAGACATTGCACCATCGTCTGAAAAGAGAAAAAAAGATGCATAATCTTAACATGCAATTACTCATGATTGACAGTATTGGGCCTTTCCAGTGGGTAGATCGTGGATCAACATTTTTTCCGTTGGGGAGTCATAACAGAGTCGGTTCATCTGATTTGTACGCTGAAAGTATTTCAGAAACTGTAGTTCAGGAGATTAAAAAGCTTCTGCTGCTGCATCCCTTGATTGTAATAGCTACAAAAGAAATCGTTTTGGATAATGTATATGGCATGGATGAGGCCAAACAAAATAATTATATGCTGGAAGAATCAGGTGGAAGAAGTATAACAAGTAGTACTCAACGACTTCCATACCGTGAATTTATGCCACCCATCTGGCAGTCATTCATTACACACAAGATACTTGTACGAGCTTCAGATGATCTTCTGCCCATTAGACTTGATCAAGAACATTCTCTTTATTTTTCGGAATGGTTATTGCCGTCACTTAGCTTCCAGGACAAGTTTGTAGTGAAGGATGTAAGAAAATCTCCACCTATCTCGTGTCCTGGTGACTTCACGACTGTCAAAGTACTCTTTGTTGGACTAATTGGAGCATCTGGTTTTTCAGGCTGGTATCTTTATTGTCTCATGATTCGACTTGGGGAGCAATGGAATGCAGTTTCCTCCTTGTCTCATAATTTTCGCGGAGCCAGCATGAGGATGTATACCAAAGGAAACAGCATTCAAGATAATGAAAGTGCAGATTGA

Protein Analysis

389

Amino Acids

44.29

Weight (kDa)

6.64

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 15
AccI GTMKAC 1 cut(s) 1124
AccII CGCG 4 cut(s) 102, 114, 283, 1104
AciI CCGC 7 cut(s) 5, 36, 39, 89, 100, 112, 1104
AclWI GGATC 4 cut(s) 26, 160, 317, 532
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 404, 776
AcuI CTGAAG 3 cut(s) 135, 320, 816
AfaI GTAC 4 cut(s) 578, 754, 825, 990
AfiI CCNNNNNNNGG 3 cut(s) 15, 175, 1116
AgsI TTSAA 2 cut(s) 404, 1145
AjnI CCWGG 2 cut(s) 912, 964
AluBI AGCT 5 cut(s) 133, 622, 653, 830, 909
AluI AGCT 5 cut(s) 133, 622, 653, 830, 909
Alw21I GWGCWC 2 cut(s) 135, 222
Alw26I GTCTC 4 cut(s) 21, 26, 1049, 1095
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 4 cut(s) 26, 160, 317, 532
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 4 cut(s) 6, 139, 500, 696
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 4 cut(s) 179, 356, 628, 631
ApoI RAATTY 2 cut(s) 404, 776
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 140, 500
AsuHPI GGTGA 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 1 cut(s) 958
Bbv12I GWGCWC 2 cut(s) 135, 222
BbvI GCAGC 4 cut(s) 166, 343, 615, 618
BccI CCATC 2 cut(s) 441, 797
BceAI ACGGC 1 cut(s) 883
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 2 cut(s) 914, 966
BclI TGATCA 2 cut(s) 337, 859
BcoDI GTCTC 4 cut(s) 21, 26, 1049, 1095
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 6 cut(s) 6, 39, 180, 357, 629, 632
BlsI GCNGC 6 cut(s) 7, 40, 181, 358, 630, 633
BmcAI AGTACT 2 cut(s) 754, 990
Bme1390I CCNGG 2 cut(s) 914, 966
BmgT120I GGNCC 2 cut(s) 140, 500
BmiI GGNNCC 3 cut(s) 142, 318, 1108
BmrFI CCNGG 2 cut(s) 914, 966
BmsI GCATC 4 cut(s) 36, 447, 643, 1022
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BsaI GGTCTC 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 175, 1116
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 508
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 3 cut(s) 127, 425, 1073
BseBI CCWGG 2 cut(s) 914, 966
BseGI GGATG 4 cut(s) 634, 697, 940, 1125
BseLI CCNNNNNNNGG 3 cut(s) 15, 175, 1116
BseMI GCAATG 3 cut(s) 127, 425, 1073
BseNI ACTGG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 4 cut(s) 166, 343, 615, 618
Bsh1236I CGCG 4 cut(s) 102, 114, 283, 1104
BshFI GGCC 4 cut(s) 8, 141, 502, 698
BsiHKAI GWGCWC 2 cut(s) 135, 222
BsiSI CCGG 2 cut(s) 138, 385
BslI CCNNNNNNNGG 3 cut(s) 15, 175, 1116
BsmAI GTCTC 4 cut(s) 21, 26, 1049, 1095
BsmBI CGTCTC 1 cut(s) 21
BsmI GAATGC 3 cut(s) 192, 1078, 1140
BsnI GGCC 4 cut(s) 8, 141, 502, 698
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 135, 222
Bsp143I GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
BspACI CCGC 7 cut(s) 5, 36, 39, 89, 100, 112, 1104
BspANI GGCC 4 cut(s) 8, 141, 502, 698
BspFNI CGCG 4 cut(s) 102, 114, 283, 1104
BspHI TCATGA 3 cut(s) 340, 483, 1047
BspLI GGNNCC 3 cut(s) 142, 318, 1108
BspPI GGATC 4 cut(s) 26, 160, 317, 532
BspTNI GGTCTC 1 cut(s) 26
BsrDI GCAATG 3 cut(s) 127, 425, 1073
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
BssNAI GTATAC 1 cut(s) 1125
BssSI CACGAG 1 cut(s) 958
Bst1107I GTATAC 1 cut(s) 1125
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 2 cut(s) 914, 966
Bst4CI ACNGT 7 cut(s) 15, 266, 398, 494, 601, 773, 982
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 4 cut(s) 135, 139, 361, 1111
BstDEI CTNAG 2 cut(s) 201, 905
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 4 cut(s) 634, 697, 940, 1125
BstFNI CGCG 4 cut(s) 102, 114, 283, 1104
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 8 cut(s) 21, 168, 312, 340, 520, 527, 841, 862
BstMAI GTCTC 4 cut(s) 21, 26, 1049, 1095
BstMBI GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
BstMWI GCNNNNNNNGC 3 cut(s) 88, 628, 1110
BstNI CCWGG 2 cut(s) 914, 966
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 2 cut(s) 912, 964
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 4 cut(s) 102, 114, 283, 1104
BstV1I GCAGC 4 cut(s) 166, 343, 615, 618
BstX2I RGATCY 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 792
BstYI RGATCY 1 cut(s) 165
BstZ17I GTATAC 1 cut(s) 1125
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 4 cut(s) 8, 141, 502, 698
BtsCI GGATG 4 cut(s) 634, 697, 940, 1125
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 4 cut(s) 135, 139, 361, 1111
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 3 cut(s) 340, 483, 1047
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 140, 500
CseI GACGC 1 cut(s) 103
Csp6I GTAC 4 cut(s) 577, 753, 824, 989
CviAII CATG 9 cut(s) 247, 313, 341, 364, 472, 484, 688, 1048, 1114
CviQI GTAC 4 cut(s) 577, 753, 824, 989
DdeI CTNAG 2 cut(s) 201, 905
DpnI GATC 8 cut(s) 20, 167, 311, 339, 519, 526, 840, 861
DpnII GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 3 cut(s) 135, 320, 816
Eco81I CCTNAGG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 912, 964
EcoT22I ATGCAT 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 9 cut(s) 250, 316, 344, 367, 475, 487, 691, 1051, 1117
FatI CATG 9 cut(s) 246, 312, 340, 363, 471, 483, 687, 1047, 1113
FbaI TGATCA 2 cut(s) 337, 859
FblI GTMKAC 1 cut(s) 1124
Fnu4HI GCNGC 6 cut(s) 6, 39, 180, 357, 629, 632
FokI GGATG 4 cut(s) 621, 704, 947, 1132
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 6 cut(s) 6, 39, 180, 357, 629, 632
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 284
GluI GCNGC 6 cut(s) 6, 39, 180, 357, 629, 632
HaeIII GGCC 4 cut(s) 8, 141, 502, 698
HapII CCGG 2 cut(s) 138, 385
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 285
Hin1II CATG 9 cut(s) 250, 316, 344, 367, 475, 487, 691, 1051, 1117
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 6 cut(s) 270, 367, 547, 558, 725, 1051
HpaII CCGG 2 cut(s) 138, 385
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 2 cut(s) 220, 1125
Hpy188I TCNGA 7 cut(s) 67, 292, 441, 571, 595, 835, 886
Hpy188III TCNNGA 8 cut(s) 341, 401, 484, 608, 863, 976, 1048, 1145
Hpy8I GTNNAC 2 cut(s) 220, 1125
Hpy99I CGWCG 2 cut(s) 26, 119
HpyAV CCTTC 1 cut(s) 925
HpyCH4III ACNGT 7 cut(s) 15, 266, 398, 494, 601, 773, 982
HpyCH4V TGCA 9 cut(s) 192, 220, 363, 430, 460, 475, 634, 1076, 1160
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 628, 1110
HpyF3I CTNAG 2 cut(s) 201, 905
Hsp92II CATG 9 cut(s) 250, 316, 344, 367, 475, 487, 691, 1051, 1117
HspAI GCGC 1 cut(s) 283
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 337, 859
Kzo9I GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
LmnI GCTCC 4 cut(s) 235, 1010, 1063, 1106
Lsp1109I GCAGC 4 cut(s) 166, 343, 615, 618
LweI GCATC 4 cut(s) 36, 447, 643, 1022
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 277, 900, 968
MalI GATC 8 cut(s) 20, 167, 311, 339, 519, 526, 840, 861
MboI GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
MboII GAAGA 7 cut(s) 77, 138, 141, 188, 734, 747, 833
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 135, 222
MluCI AATT 8 cut(s) 187, 347, 404, 476, 709, 776, 1005, 1096
MlyI GAGTC 3 cut(s) 376, 556, 567
MmeI TCCRAC 1 cut(s) 979
MnlI CCTC 7 cut(s) 104, 117, 154, 337, 688, 1093, 1110
Mph1103I ATGCAT 1 cut(s) 462
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 2 cut(s) 468, 615
MslI CAYNNNNRTG 1 cut(s) 1118
MspI CCGG 2 cut(s) 138, 385
MspR9I CCNGG 2 cut(s) 914, 966
Mva1269I GAATGC 3 cut(s) 192, 1078, 1140
MvaI CCWGG 2 cut(s) 914, 966
MvnI CGCG 4 cut(s) 102, 114, 283, 1104
MwoI GCNNNNNNNGC 3 cut(s) 88, 628, 1110
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 9 cut(s) 250, 316, 344, 367, 475, 487, 691, 1051, 1117
NlaIV GGNNCC 3 cut(s) 142, 318, 1108
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 900, 968
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 1 cut(s) 475
PagI TCATGA 3 cut(s) 340, 483, 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 3 cut(s) 192, 1078, 1140
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 270, 725, 1051
PflMI CCANNNNNTGG 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 6 cut(s) 7, 40, 181, 358, 630, 633
PleI GAGTC 3 cut(s) 375, 555, 566
PpsI GAGTC 3 cut(s) 375, 555, 566
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 912, 964
PspGI CCWGG 2 cut(s) 912, 964
PspN4I GGNNCC 3 cut(s) 142, 318, 1108
PspPI GGNCC 2 cut(s) 140, 500
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 4 cut(s) 578, 754, 825, 990
RsaNI GTAC 4 cut(s) 577, 753, 824, 989
RseI CAYNNNNRTG 1 cut(s) 1118
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 468, 615
SatI GCNGC 6 cut(s) 6, 39, 180, 357, 629, 632
Sau3AI GATC 8 cut(s) 18, 165, 309, 337, 517, 524, 838, 859
Sau96I GGNCC 2 cut(s) 140, 500
ScaI AGTACT 2 cut(s) 754, 990
SchI GAGTC 3 cut(s) 376, 556, 567
ScrFI CCNGG 2 cut(s) 914, 966
SduI GDGCHC 2 cut(s) 135, 222
SetI ASST 7 cut(s) 135, 624, 655, 733, 832, 911, 955
SfaNI GCATC 4 cut(s) 36, 447, 643, 1022
SfcI CTRYAG 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 1118
Sse9I AATT 8 cut(s) 187, 347, 404, 476, 709, 776, 1005, 1096
SsiI CCGC 7 cut(s) 5, 36, 39, 89, 100, 112, 1104
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 912, 964
TaaI ACNGT 7 cut(s) 15, 266, 398, 494, 601, 773, 982
TaqI TCGA 5 cut(s) 21, 129, 268, 273, 1054
TasI AATT 8 cut(s) 187, 347, 404, 476, 709, 776, 1005, 1096
TatI WGTACW 2 cut(s) 752, 988
TauI GCSGC 2 cut(s) 8, 41
TfiI GAWTC 3 cut(s) 270, 725, 1051
Tru1I TTAA 2 cut(s) 468, 615
Tru9I TTAA 2 cut(s) 468, 615
TscAI CASTG 1 cut(s) 515
TseFI GTSAC 2 cut(s) 900, 968
TseI GCWGC 4 cut(s) 179, 356, 628, 631
Tsp45I GTSAC 2 cut(s) 900, 968
TspDTI ATGAA 4 cut(s) 51, 555, 793, 1167
TspGWI ACGGA 2 cut(s) 39, 528
TspRI CASTG 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 15
VneI GTGCAC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 2 cut(s) 404, 776
XceI RCATGY 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 1124
XspI CTAG 1 cut(s) 54
ZrmI AGTACT 2 cut(s) 754, 990
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.