Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Forward (+)

63703565 .. 63706504

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTCATTGACTTGGACTGTCGCTTTGATATATTGCGCCTTTCGGAAATGCTAAAGCACAAGATTATGGAACCCAATGGGTCAATGCATGATCACGAGGAATTGTTTGCTGCGTGCATGAGGCGCTTCATGTATGTCCGGTGCTATGACAGTCTTGAATTTCTTGCCACTCTCAAGACGTTGCACCATCGGCTGAAAAGGGAAAAAGCCATGCATAATGTTAACATTCAGTTGCTCATGATTGACAGTATCGGACCTTTCCATTGGGTAGATCGTGGGTCAACATTCTTTCCATTGGGGAGTCACAACAGGAAATGCCTCTCTCTTCAGAGTATTTCAGAAACTGTAGTTCAGGAGATTAGAAAGCTTCTGGTGCTGCATCCCATGCTTGTAATATCTACAAAAGAAATCGTTTTGGGGAATGTATATGGCACGGATGGGGCCAAACAAAATAAATATATGCTGGAAGCATCAGGTGTAAGAAGTATAACAAGTAGTAGTCAACAACTTCCATATCGTGAATTTATGCCACCCATCTGGCAGTCACTCATTACACACCAGATACTTGTAAGAGCTTCAGATGATCATCTGCTTATAAGACCTGACCAAGAAAATTCTCTTTATTTGTCGGAGTGGTTATTGCCATCACTTGGCTATCAGGACAAGTTTGTAGTGAAAGATGCTGGTATCTTTGTTGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

234

Amino Acids

27.14

Weight (kDa)

7.18

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	650
AcsI	RAATTY	3 cut(s)	158, 521, 613
AcuI	CTGAAG	2 cut(s)	311, 561
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	2 cut(s)	367, 575
AluI	AGCT	2 cut(s)	367, 575
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	110, 376
ApoI	RAATTY	3 cut(s)	158, 521, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	2 cut(s)	39, 126
AspS9I	GGNCC	2 cut(s)	254, 441
AvaII	GGWCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	97, 363
BccI	CCATC	4 cut(s)	195, 431, 542, 652
BclI	TGATCA	2 cut(s)	91, 583
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	127
BisI	GCNGC	2 cut(s)	111, 377
BlsI	GCNGC	2 cut(s)	112, 378
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	254, 441
BmiI	GGNNCC	2 cut(s)	72, 442
BmsI	GCATC	3 cut(s)	388, 479, 670
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	585
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse8I	GATNNNNATC	1 cut(s)	585
BseGI	GGATG	2 cut(s)	379, 442
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	97, 363
BshFI	GGCC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	650
BsnI	GGCC	1 cut(s)	443
Bsp143I	GATC	3 cut(s)	91, 271, 583
BspANI	GGCC	1 cut(s)	443
BspHI	TCATGA	2 cut(s)	237, 701
BspLI	GGNNCC	2 cut(s)	72, 442
BssMI	GATC	3 cut(s)	91, 271, 583
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst4CI	ACNGT	4 cut(s)	20, 152, 248, 346
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	379, 442
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	39, 126
BstKTI	GATC	3 cut(s)	94, 274, 586
BstMBI	GATC	3 cut(s)	91, 271, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 190, 373, 385
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	97, 363
BstXI	CCANNNNNNTGG	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	379, 442
Cac8I	GCNNGC	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	2 cut(s)	237, 701
CfoI	GCGC	2 cut(s)	39, 126
Cfr13I	GGNCC	2 cut(s)	254, 441
CviAII	CATG	7 cut(s)	89, 118, 130, 211, 238, 385, 702
CviJI	RGCY	6 cut(s)	193, 209, 367, 443, 575, 654
CviKI_1	RGCY	6 cut(s)	193, 209, 367, 443, 575, 654
DpnI	GATC	3 cut(s)	93, 273, 585
DpnII	GATC	3 cut(s)	91, 271, 583
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	311, 561
EcoT22I	ATGCAT	2 cut(s)	90, 216
FaeI	CATG	7 cut(s)	92, 121, 133, 214, 241, 388, 705
FatI	CATG	7 cut(s)	88, 117, 129, 210, 237, 384, 701
FbaI	TGATCA	2 cut(s)	91, 583
Fnu4HI	GCNGC	2 cut(s)	111, 377
FokI	GGATG	2 cut(s)	366, 449
Fsp4HI	GCNGC	2 cut(s)	111, 377
GlaI	GCGC	2 cut(s)	38, 125
GluI	GCNGC	2 cut(s)	111, 377
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	2 cut(s)	39, 126
Hin1II	CATG	7 cut(s)	92, 121, 133, 214, 241, 388, 705
Hin6I	GCGC	2 cut(s)	37, 124
HinP1I	GCGC	2 cut(s)	37, 124
HincII	GTYRAC	3 cut(s)	223, 282, 503
HindII	GTYRAC	3 cut(s)	223, 282, 503
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	1 cut(s)	301
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	223, 282, 503
Hpy188I	TCNGA	6 cut(s)	46, 254, 330, 340, 580, 631
Hpy188III	TCNNGA	8 cut(s)	95, 155, 175, 238, 353, 518, 659, 702
Hpy8I	GTNNAC	3 cut(s)	223, 282, 503
HpyCH4III	ACNGT	4 cut(s)	20, 152, 248, 346
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	88, 117, 184, 214, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 190, 373, 385
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	7 cut(s)	92, 121, 133, 214, 241, 388, 705
HspAI	GCGC	2 cut(s)	37, 124
Ksp22I	TGATCA	2 cut(s)	91, 583
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	91, 271, 583
Lsp1109I	GCAGC	2 cut(s)	97, 363
LweI	GCATC	3 cut(s)	388, 479, 670
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	302, 543
MalI	GATC	3 cut(s)	93, 273, 585
MboI	GATC	3 cut(s)	91, 271, 583
MboII	GAAGA	1 cut(s)	317
MluCI	AATT	4 cut(s)	101, 158, 521, 613
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	3 cut(s)	91, 114, 329
Mph1103I	ATGCAT	2 cut(s)	90, 216
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	123, 190, 373, 385
NdeII	GATC	3 cut(s)	91, 271, 583
NlaIII	CATG	7 cut(s)	92, 121, 133, 214, 241, 388, 705
NlaIV	GGNNCC	2 cut(s)	72, 442
NmuCI	GTSAC	2 cut(s)	302, 543
NsiI	ATGCAT	2 cut(s)	90, 216
PagI	TCATGA	2 cut(s)	237, 701
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	2 cut(s)	112, 378
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	596
PspN4I	GGNNCC	2 cut(s)	72, 442
PspPI	GGNCC	2 cut(s)	254, 441
PstNI	CAGNNNCTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	111, 377
Sau3AI	GATC	3 cut(s)	91, 271, 583
Sau96I	GGNCC	2 cut(s)	254, 441
SchI	GAGTC	1 cut(s)	310
SetI	ASST	6 cut(s)	182, 259, 369, 478, 577, 604
SfaNI	GCATC	3 cut(s)	388, 479, 670
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	101, 158, 521, 613
TaaI	ACNGT	4 cut(s)	20, 152, 248, 346
TaiI	ACGT	1 cut(s)	182
TasI	AATT	4 cut(s)	101, 158, 521, 613
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	302, 543
TseI	GCWGC	2 cut(s)	110, 376
Tsp45I	GTSAC	2 cut(s)	302, 543
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	3 cut(s)	158, 521, 613
Zsp2I	ATGCAT	2 cut(s)	90, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.