Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Forward (+)

58134154 .. 58136487

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG441400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGCCAAACGGTGGATCGACGGAGACGAGACCGCCGCCGAGATGCTCTCTAGGGTTTCATCAGAGCGGCCCTTCTTGCTTCTTCCGCCTCTCCACCGCGTTCCTCTCCGCGTCGGCAATGTGGTCGAGCTCGCCGGCCCCTCTTCTTCAGCCAAAACCCAGATTCTGATTCAGGCCGCTCTGAATTGCATTCTTCCTAAGGAGTGGAATGGTATGCACTATGGGGGTTTGGAGCGCTTGGTGATGTTCATTGACTTGGATTGTCGCTTCGATGTTACGCGCCTTTCGGAAATGCTAAAGCACAGGATTATGGAACCCAATGGGTCCATGTATGATCACGAGGAATTGTTTGCTGCGTGCATGAGGCGCTTCATGTATGTCCGGTGCTATGACAGTCTTGAATTTCTTGCCACTCTCAAGACGTTGCACCATCGGCTGAAAAGGGAAAAAGCCATGCATAATGTTAACATTCAGTTGCTCATGATTGATAGTATCGGACCTTTCCATTGGGTAGATCGTGGGTCAACATTCTTTCCACTGGGGAGTCATAACAGGAAATGCCTCTCTCTTCAGAGTATTTCAGAAACTGTAGTTCAGGAGATTAGAAAGCTTCTGGTGCTGCATCCCATGCTTGTAATAGCTACAAAAGAAATCGTTTTGGGGAATGTATATGGCATGGATGAGGCCAAACAAAATAAATATATGCTGGAAGCATCAGGTGTAAGAAGTATAACAAGTAGTAGTCAACAACTTCCATATCGTGAATTTATGCCACCCATCTGGCAGTCACTCATTACACACAAGATACTTGTACGAGCTTCAGATGATCATCTGCTTATAAGACCTGACCAAGAAAATTCTCTTTATTTGTCGGAGTGGTTATTGCCATCACTTGGCTATCAGGACAAGTTTGTAGTGAAAGATGCTGGTATCTTTGTTGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

316

Amino Acids

36.25

Weight (kDa)

7.73

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	842
AccB7I	CCANNNNNTGG	2 cut(s)	15, 896
AccBSI	CCGCTC	2 cut(s)	70, 182
AccII	CGCG	3 cut(s)	102, 114, 283
AciI	CCGC	8 cut(s)	5, 36, 39, 70, 89, 100, 112, 180
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	404, 767, 859
AcuI	CTGAAG	3 cut(s)	135, 557, 807
AfaI	GTAC	1 cut(s)	816
AfeI	AGCGCT	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	15, 896
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	4 cut(s)	133, 613, 644, 821
AluI	AGCT	4 cut(s)	133, 613, 644, 821
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	21, 26
AlwI	GGATC	1 cut(s)	26
AlwNI	CAGNNNCTG	2 cut(s)	169, 590
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	5 cut(s)	6, 71, 139, 177, 687
ApeKI	GCWGC	2 cut(s)	356, 622
ApoI	RAATTY	3 cut(s)	404, 767, 859
AspLEI	GCGC	3 cut(s)	240, 285, 372
AspS9I	GGNCC	4 cut(s)	72, 140, 327, 500
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	327, 500
AxyI	CCTNAGG	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	343, 609
BccI	CCATC	3 cut(s)	441, 788, 898
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BclI	TGATCA	2 cut(s)	337, 829
BcoDI	GTCTC	2 cut(s)	21, 26
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	2 cut(s)	241, 373
BisI	GCNGC	6 cut(s)	6, 39, 71, 180, 357, 623
BlsI	GCNGC	6 cut(s)	7, 40, 72, 181, 358, 624
Bme18I	GGWCC	2 cut(s)	327, 500
BmgT120I	GGNCC	4 cut(s)	72, 140, 327, 500
BmiI	GGNNCC	3 cut(s)	142, 318, 328
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	4 cut(s)	36, 634, 725, 916
BmuI	ACTGGG	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpuEI	CTTGAG	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	831
BsaI	GGTCTC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 896
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	546
Bse21I	CCTNAGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	831
BseGI	GGATG	2 cut(s)	625, 688
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	15, 896
BseMI	GCAATG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	343, 609
Bsh1236I	CGCG	3 cut(s)	102, 114, 283
BshFI	GGCC	5 cut(s)	8, 73, 141, 179, 689
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	138, 385
BslI	CCNNNNNNNGG	2 cut(s)	15, 896
BsmAI	GTCTC	2 cut(s)	21, 26
BsmBI	CGTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	5 cut(s)	8, 73, 141, 179, 689
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	18, 337, 517, 829
BspACI	CCGC	8 cut(s)	5, 36, 39, 70, 89, 100, 112, 180
BspANI	GGCC	5 cut(s)	8, 73, 141, 179, 689
BspFNI	CGCG	3 cut(s)	102, 114, 283
BspHI	TCATGA	2 cut(s)	483, 947
BspLI	GGNNCC	3 cut(s)	142, 318, 328
BspPI	GGATC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	2 cut(s)	70, 182
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	4 cut(s)	18, 337, 517, 829
BssSI	CACGAG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	3 cut(s)	15, 398, 592
Bst6I	CTCTTC	2 cut(s)	151, 576
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstC8I	GCNNGC	3 cut(s)	135, 139, 361
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	625, 688
BstFNI	CGCG	3 cut(s)	102, 114, 283
BstH2I	RGCGCY	2 cut(s)	241, 373
BstHHI	GCGC	3 cut(s)	240, 285, 372
BstKTI	GATC	4 cut(s)	21, 340, 520, 832
BstMAI	GTCTC	2 cut(s)	21, 26
BstMBI	GATC	4 cut(s)	18, 337, 517, 829
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 88, 369, 436, 619, 631
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	3 cut(s)	102, 114, 283
BstV1I	GCAGC	2 cut(s)	343, 609
BstXI	CCANNNNNNTGG	1 cut(s)	783
Bsu36I	CCTNAGG	1 cut(s)	201
BsuRI	GGCC	5 cut(s)	8, 73, 141, 179, 689
BtsCI	GGATG	2 cut(s)	625, 688
BtsIMutI	CAGTG	1 cut(s)	539
Cac8I	GCNNGC	3 cut(s)	135, 139, 361
CaiI	CAGNNNCTG	2 cut(s)	169, 590
CciI	TCATGA	2 cut(s)	483, 947
CfoI	GCGC	3 cut(s)	240, 285, 372
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	4 cut(s)	72, 140, 327, 500
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	8 cut(s)	331, 364, 376, 457, 484, 631, 679, 948
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	4 cut(s)	20, 339, 519, 831
DpnII	GATC	4 cut(s)	18, 337, 517, 829
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	151, 576
EarI	CTCTTC	2 cut(s)	151, 576
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	327, 500
Eco47III	AGCGCT	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	3 cut(s)	135, 557, 807
Eco81I	CCTNAGG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	8 cut(s)	334, 367, 379, 460, 487, 634, 682, 951
FatI	CATG	8 cut(s)	330, 363, 375, 456, 483, 630, 678, 947
FbaI	TGATCA	2 cut(s)	337, 829
Fnu4HI	GCNGC	6 cut(s)	6, 39, 71, 180, 357, 623
FokI	GGATG	2 cut(s)	612, 695
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	6 cut(s)	6, 39, 71, 180, 357, 623
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	3 cut(s)	239, 284, 371
GluI	GCNGC	6 cut(s)	6, 39, 71, 180, 357, 623
HaeII	RGCGCY	2 cut(s)	241, 373
HaeIII	GGCC	5 cut(s)	8, 73, 141, 179, 689
HapII	CCGG	2 cut(s)	138, 385
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	3 cut(s)	240, 285, 372
Hin1II	CATG	8 cut(s)	334, 367, 379, 460, 487, 634, 682, 951
Hin6I	GCGC	3 cut(s)	238, 283, 370
HinP1I	GCGC	3 cut(s)	238, 283, 370
HincII	GTYRAC	3 cut(s)	469, 528, 749
HindII	GTYRAC	3 cut(s)	469, 528, 749
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	3 cut(s)	166, 172, 547
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	2 cut(s)	138, 385
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	3 cut(s)	469, 528, 749
Hpy188I	TCNGA	9 cut(s)	67, 171, 186, 292, 500, 576, 586, 826, 877
Hpy188III	TCNNGA	8 cut(s)	341, 401, 421, 484, 599, 764, 905, 948
Hpy8I	GTNNAC	3 cut(s)	469, 528, 749
Hpy99I	CGWCG	2 cut(s)	26, 119
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	15, 398, 592
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	6 cut(s)	192, 220, 363, 430, 460, 625
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 88, 369, 436, 619, 631
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	8 cut(s)	334, 367, 379, 460, 487, 634, 682, 951
HspAI	GCGC	3 cut(s)	238, 283, 370
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	337, 829
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	18, 337, 517, 829
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	2 cut(s)	343, 609
LweI	GCATC	4 cut(s)	36, 634, 725, 916
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	277, 789
MalI	GATC	4 cut(s)	20, 339, 519, 831
MbiI	CCGCTC	2 cut(s)	70, 182
MboI	GATC	4 cut(s)	18, 337, 517, 829
MboII	GAAGA	5 cut(s)	77, 138, 141, 188, 563
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	5 cut(s)	187, 347, 404, 767, 859
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	855
MnlI	CCTC	7 cut(s)	102, 117, 154, 337, 360, 575, 679
Mph1103I	ATGCAT	1 cut(s)	462
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	1 cut(s)	468
MspI	CCGG	2 cut(s)	138, 385
Mva1269I	GAATGC	1 cut(s)	192
MvnI	CGCG	3 cut(s)	102, 114, 283
MwoI	GCNNNNNNNGC	6 cut(s)	79, 88, 369, 436, 619, 631
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	4 cut(s)	18, 337, 517, 829
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	8 cut(s)	334, 367, 379, 460, 487, 634, 682, 951
NlaIV	GGNNCC	3 cut(s)	142, 318, 328
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	789
NsiI	ATGCAT	1 cut(s)	462
PagI	TCATGA	2 cut(s)	483, 947
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	166, 172
PflMI	CCANNNNNTGG	2 cut(s)	15, 896
PkrI	GCNGC	6 cut(s)	7, 40, 72, 181, 358, 624
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	842
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	142, 318, 328
PspPI	GGNCC	4 cut(s)	72, 140, 327, 500
PstNI	CAGNNNCTG	2 cut(s)	169, 590
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	6 cut(s)	6, 39, 71, 180, 357, 623
Sau3AI	GATC	4 cut(s)	18, 337, 517, 829
Sau96I	GGNCC	4 cut(s)	72, 140, 327, 500
SchI	GAGTC	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	135, 428, 505, 615, 646, 724, 823, 850
SfaNI	GCATC	4 cut(s)	36, 634, 725, 916
SfcI	CTRYAG	1 cut(s)	591
SinI	GGWCC	2 cut(s)	327, 500
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	187, 347, 404, 767, 859
SsiI	CCGC	8 cut(s)	5, 36, 39, 70, 89, 100, 112, 180
SspMI	CTAG	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	3 cut(s)	15, 398, 592
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	3 cut(s)	21, 129, 273
TasI	AATT	5 cut(s)	187, 347, 404, 767, 859
TauI	GCSGC	4 cut(s)	8, 41, 73, 182
TfiI	GAWTC	2 cut(s)	166, 172
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	789
TseI	GCWGC	2 cut(s)	356, 622
Tsp45I	GTSAC	1 cut(s)	789
TspDTI	ATGAA	3 cut(s)	51, 241, 364
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	546
Van91I	CCANNNNNTGG	2 cut(s)	15, 896
VpaK11BI	GGWCC	2 cut(s)	327, 500
XapI	RAATTY	3 cut(s)	404, 767, 859
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.