Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Reverse (-)

54164285 .. 54165019

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0370600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGAAACGAGACAGTAGTAGTGGCTGAAACTGCGGGGTCGATAAAAGTGGCCGTGGTAGTGTGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACGACGCCGCTCCTCTCTCGGAGATTCCACCTTTTCCCTTCCCAGTGGCCACCTTGAGTTTGGCGAGAGCTTTGAGGAGTGTGCAGCGAGGGAACTGAAGGAAGAAACTGGTTTAGACATTGGCAAGATAGAATTGCTAACTGTGACCAACAACCTGTTCCTAGACGAAGCCAAACCATCACAGTACGTGGCTATTTTCATGAGAGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAGAATATTGAGCCAGAATTCTGTTATGGTTGGGGATGGTATGAGTGGGACAATCTTCCGAAGCCACTCTTCTGGCCTTTGGAGAAAGTGGTTCAGGATGGATTTAACCCTTTTCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

150

Amino Acids

16.82

Weight (kDa)

4.6

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	16 - 141	1.8e-18	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	2 cut(s)	35, 103
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	2 cut(s)	51, 142
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	4 cut(s)	51, 76, 142, 404
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	347
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	3 cut(s)	280, 360, 422
BceAI	ACGGC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	2 cut(s)	103, 180
BlsI	GCNGC	2 cut(s)	104, 181
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	138, 208
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	371, 433
BseNI	ACTGG	2 cut(s)	138, 208
BseRI	GAGGAG	2 cut(s)	97, 185
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	4 cut(s)	53, 78, 144, 406
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	108, 392
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	108, 392
BsnI	GGCC	4 cut(s)	53, 78, 144, 406
Bsp1286I	GDGCHC	2 cut(s)	90, 330
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	35, 103
BspANI	GGCC	4 cut(s)	53, 78, 144, 406
BspHI	TCATGA	1 cut(s)	294
BspPI	GGATC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	138, 208
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	100
Bst4CI	ACNGT	3 cut(s)	16, 238, 279
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	371, 433
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 308
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	53, 78, 144, 406
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	371, 433
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	145, 309
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	294
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	295, 450
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	51, 142
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	298, 453
FaiI	YATR	4 cut(s)	296, 357, 372, 451
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	2 cut(s)	108, 392
FatI	CATG	2 cut(s)	294, 449
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	103, 180
FokI	GGATG	2 cut(s)	378, 440
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	103, 180
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	2 cut(s)	103, 180
HaeIII	GGCC	4 cut(s)	53, 78, 144, 406
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	298, 453
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	116, 390
Hpy188III	TCNNGA	3 cut(s)	295, 323, 425
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	143, 187
HpyCH4III	ACNGT	3 cut(s)	16, 238, 279
HpyCH4IV	ACGT	2 cut(s)	84, 282
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 308
HpySE526I	ACGT	2 cut(s)	84, 282
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	298, 453
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	9 cut(s)	80, 151, 189, 263, 293, 344, 357, 388, 410
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	84, 282
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	209, 377, 391
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	90, 330
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	227, 347
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	5 cut(s)	68, 118, 163, 177, 327
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	32, 308
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	298, 453
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	104, 181
Ppu21I	YACGTR	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	103, 180
Sau3AI	GATC	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	90, 330
SetI	ASST	6 cut(s)	87, 128, 150, 167, 252, 285
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	227, 347
SsiI	CCGC	2 cut(s)	35, 103
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	16, 238, 279
TaiI	ACGT	2 cut(s)	87, 285
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	227, 347
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	145, 309
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	145, 309
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.