Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Reverse (-)

485487 .. 488258

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1006200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACGCCCAAAAGGTGGATCGATGGGGACGAGAGCGCTGCCGAGATGCTCGGTCGGGTTGCGGCGGAGCGACCCTTCTTGCTCATTCCCCCTCTCCACCGCGTTCCACTCCGCGTTGGCAATGTTGTGGAGCTCGTCGGGCCCTCTTCTTCCGCCAAAACCCTCATCCTCATTCAAGCTGCTGTGAACTGCATTCTCCCAAAGGAGTGGAATGGGGTGCACTATGGGGGCTTGGAGCGTTTGGTAATGTTCCTTGACTTGGATTGCCGCTTCGACATTCTCCGCCTTTCGGAGATGCTAAAGCTCCGAATTATGGAACCCAATGGGTCAATGAATTACGACGAGGGTTTGTTTAATTTGTGCATGAGACGCTTCTTGTATGTCCGTTGCTACGATAGTCTTCAGTTTCTTGCCACTCTCAAGACAATGCATTATCGGCTTCGAAAGGAGAAAGAAGAGCATCATGTTAGCATTTATTTACTCATGATTGACAGTATTGGATCTTTCCATTGGATAGATCGTGGCTCAACATTCTTTCCGCTTGGGGGCGAGAAGAGGAAACGCCTCTCTCTTCAGAATGTGTCGGATTCTGTAGTTCAAGAGATCAGAAAGCTTCAGCTGGTGCATCCCATGCTTGTGATAGCTACAAAAGAAATACTTTTGGGGAATGCATATGGTGCTTATGAGGCCAAACAAAATAAATCTTTGCCAGAGGTCTCGGATTTAAGAAATTCAACGAGTAATACTCAACAACTTCCATATCGCGAGTATATGCCATCCGTCTGGCAGTCCTTTGTTACACACAACTTACTTGTACGAGCTTCAGATGATCATCTGCCGATAAGACATCATGAAGAATCTTCCCTCTATTTGTCTGAATGGTTGTTGCCTTCACTTAGTTTCCGAGACAAGTTTATCGTGAAAGATGCTGGTATCGTTATGGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

317

Amino Acids

36.4

Weight (kDa)

8.27

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccII	CGCG	3 cut(s)	102, 114, 765
AciI	CCGC	8 cut(s)	62, 65, 100, 112, 153, 268, 283, 539
AclWI	GGATC	2 cut(s)	26, 508
AcsI	RAATTY	1 cut(s)	730
AcuI	CTGAAG	4 cut(s)	386, 557, 599, 807
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	816
AfeI	AGCGCT	1 cut(s)	37
AfiI	CCNNNNNNNGG	5 cut(s)	15, 259, 289, 313, 545
AgsI	TTSAA	3 cut(s)	176, 599, 735
AluBI	AGCT	7 cut(s)	133, 179, 304, 613, 619, 644, 821
AluI	AGCT	7 cut(s)	133, 179, 304, 613, 619, 644, 821
Alw21I	GWGCWC	2 cut(s)	135, 222
Alw26I	GTCTC	3 cut(s)	361, 721, 900
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	26, 508
Aor51HI	AGCGCT	1 cut(s)	37
AoxI	GGCC	2 cut(s)	140, 687
ApaI	GGGCCC	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	38, 179
ApoI	RAATTY	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	140, 141
AsuII	TTCGAA	1 cut(s)	442
BaeGI	GKGCMC	2 cut(s)	144, 222
BanII	GRGCYC	2 cut(s)	135, 144
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	2 cut(s)	135, 222
BbvI	GCAGC	2 cut(s)	25, 166
BccI	CCATC	2 cut(s)	17, 784
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	3 cut(s)	361, 721, 900
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	4 cut(s)	39, 63, 180, 268
BlsI	GCNGC	4 cut(s)	40, 64, 181, 269
BmgT120I	GGNCC	2 cut(s)	140, 141
BmiI	GGNNCC	2 cut(s)	142, 318
BmsI	GCATC	5 cut(s)	36, 285, 469, 634, 916
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	831
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 259, 289, 313, 545
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	831
BseCI	ATCGAT	1 cut(s)	21
BseGI	GGATG	3 cut(s)	165, 625, 776
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	5 cut(s)	15, 259, 289, 313, 545
BseMI	GCAATG	1 cut(s)	127
BseSI	GKGCMC	2 cut(s)	144, 222
BseXI	GCAGC	2 cut(s)	25, 166
Bsh1236I	CGCG	3 cut(s)	102, 114, 765
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	142, 689
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	135, 222
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	5 cut(s)	15, 259, 289, 313, 545
BsmAI	GTCTC	3 cut(s)	361, 721, 900
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	192, 673
BsnI	GGCC	2 cut(s)	142, 689
Bso31I	GGTCTC	1 cut(s)	721
Bsp119I	TTCGAA	1 cut(s)	442
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	3 cut(s)	135, 144, 222
Bsp143I	GATC	5 cut(s)	18, 500, 517, 603, 829
Bsp68I	TCGCGA	1 cut(s)	765
BspACI	CCGC	8 cut(s)	62, 65, 100, 112, 153, 268, 283, 539
BspANI	GGCC	2 cut(s)	142, 689
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	3 cut(s)	102, 114, 765
BspHI	TCATGA	2 cut(s)	483, 850
BspLI	GGNNCC	2 cut(s)	142, 318
BspPI	GGATC	2 cut(s)	26, 508
BspQI	GCTCTTC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	127
BssMI	GATC	5 cut(s)	18, 500, 517, 603, 829
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	4 cut(s)	151, 450, 548, 576
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	631, 677
BstBI	TTCGAA	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	896
BstF5I	GGATG	3 cut(s)	165, 625, 776
BstFNI	CGCG	3 cut(s)	102, 114, 765
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	5 cut(s)	21, 503, 520, 606, 832
BstMAI	GTCTC	3 cut(s)	361, 721, 900
BstMBI	GATC	5 cut(s)	18, 500, 517, 603, 829
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 369, 436, 631, 677, 686
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	2 cut(s)	144, 222
BstUI	CGCG	3 cut(s)	102, 114, 765
BstV1I	GCAGC	2 cut(s)	25, 166
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	2 cut(s)	207, 783
BstYI	RGATCY	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	142, 689
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	165, 625, 776
BtuMI	TCGCGA	1 cut(s)	765
CciI	TCATGA	2 cut(s)	483, 850
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	140, 141
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	13, 378
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	5 cut(s)	364, 464, 484, 631, 851
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	1 cut(s)	896
DpnI	GATC	5 cut(s)	20, 502, 519, 605, 831
DpnII	GATC	5 cut(s)	18, 500, 517, 603, 829
Eam1104I	CTCTTC	4 cut(s)	151, 450, 548, 576
EarI	CTCTTC	4 cut(s)	151, 450, 548, 576
EciI	GGCGGA	3 cut(s)	80, 142, 272
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	135, 144
Eco31I	GGTCTC	1 cut(s)	721
Eco47III	AGCGCT	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	4 cut(s)	386, 557, 599, 807
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	141
EcoT22I	ATGCAT	2 cut(s)	432, 673
EcoT38I	GRGCYC	2 cut(s)	135, 144
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	5 cut(s)	367, 467, 487, 634, 854
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	363, 463, 483, 630, 850
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	4 cut(s)	39, 63, 180, 268
FokI	GGATG	3 cut(s)	152, 612, 763
FriOI	GRGCYC	2 cut(s)	135, 144
Fsp4HI	GCNGC	4 cut(s)	39, 63, 180, 268
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	4 cut(s)	39, 63, 180, 268
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	142, 689
HgaI	GACGC	2 cut(s)	13, 378
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	367, 467, 487, 634, 854
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	2 cut(s)	587, 857
Hpy166II	GTNNAC	2 cut(s)	187, 220
Hpy188I	TCNGA	9 cut(s)	292, 308, 576, 586, 608, 721, 826, 877, 905
Hpy188III	TCNNGA	7 cut(s)	421, 484, 599, 764, 851, 919, 948
Hpy8I	GTNNAC	2 cut(s)	187, 220
Hpy99I	CGWCG	2 cut(s)	140, 344
HpyAV	CCTTC	2 cut(s)	85, 900
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	6 cut(s)	192, 220, 363, 430, 625, 671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 369, 436, 631, 677, 686
HpyF3I	CTNAG	1 cut(s)	896
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	367, 467, 487, 634, 854
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	5 cut(s)	18, 500, 517, 603, 829
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	4 cut(s)	67, 130, 235, 309
LpnPI	CCDG	4 cut(s)	605, 723, 769, 915
Lsp1109I	GCAGC	2 cut(s)	25, 166
LweI	GCATC	5 cut(s)	36, 285, 469, 634, 916
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	5 cut(s)	20, 502, 519, 605, 831
MboI	GATC	5 cut(s)	18, 500, 517, 603, 829
MboII	GAAGA	8 cut(s)	138, 141, 392, 467, 563, 565, 852, 866
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	3 cut(s)	135, 144, 222
MluCI	AATT	4 cut(s)	309, 334, 355, 730
MmeI	TCCRAC	1 cut(s)	564
Mph1103I	ATGCAT	2 cut(s)	432, 673
MseI	TTAA	2 cut(s)	354, 725
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	619
Mva1269I	GAATGC	2 cut(s)	192, 673
MvnI	CGCG	3 cut(s)	102, 114, 765
MwoI	GCNNNNNNNGC	6 cut(s)	139, 369, 436, 631, 677, 686
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	5 cut(s)	18, 500, 517, 603, 829
NlaIII	CATG	5 cut(s)	367, 467, 487, 634, 854
NlaIV	GGNNCC	2 cut(s)	142, 318
NmeAIII	GCCGAG	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	765
NsiI	ATGCAT	2 cut(s)	432, 673
NspV	TTCGAA	1 cut(s)	442
PagI	TCATGA	2 cut(s)	483, 850
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	2 cut(s)	192, 673
PfeI	GAWTC	2 cut(s)	587, 857
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	40, 64, 181, 269
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	142, 318
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	2 cut(s)	140, 141
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	619
RruI	TCGCGA	1 cut(s)	765
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	354, 725
SatI	GCNGC	4 cut(s)	39, 63, 180, 268
Sau3AI	GATC	5 cut(s)	18, 500, 517, 603, 829
Sau96I	GGNCC	2 cut(s)	140, 141
SduI	GDGCHC	3 cut(s)	135, 144, 222
SetI	ASST	9 cut(s)	17, 135, 181, 306, 615, 621, 646, 717, 823
SfaNI	GCATC	5 cut(s)	36, 285, 469, 634, 916
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	309, 334, 355, 730
SsiI	CCGC	8 cut(s)	62, 65, 100, 112, 153, 268, 283, 539
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	21, 273, 442
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	309, 334, 355, 730
TauI	GCSGC	2 cut(s)	65, 270
TfiI	GAWTC	2 cut(s)	587, 857
Tru1I	TTAA	2 cut(s)	354, 725
Tru9I	TTAA	2 cut(s)	354, 725
TseI	GCWGC	2 cut(s)	38, 179
TspDTI	ATGAA	2 cut(s)	347, 867
TspGWI	ACGGA	2 cut(s)	374, 769
Van91I	CCANNNNNTGG	1 cut(s)	15
VneI	GTGCAC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	730
Zsp2I	ATGCAT	2 cut(s)	432, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.