Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008056

Physical Location & Seq

Genomic Coordinates Forward (+)

32269821 .. 32272557

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G344400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTTGGTAGGGTTGCAACGGAGCGACCCTTCTTGCTTCTTCCGCCTCTTCATCGAGTTCCTCTCCGTGTCGGCAATGTAGTGGAGCTCGTCGGCCCCTCTGCTTCGGCAAAAACCCACATCCTCATTCAAGCTGCTGTGAATTGCATTCTCCCTAAAGAGTGGAATGGGGTGCACTATGGGGGCTTGGAGCGTTTGGTAATGTTCATTGACTTGGATTGCCGCTTTGACATTCTGCGCCTCTCGGAAATCCTAAAGCACCAAATTACGGAGCCCAATGGGTCAATGTATTACGATGAGGAGTTGTATGCTTTGTGCATGAGACGCTTCTTGTATGTCCGTTGTTATGATAGTCTTGAATTTCTTGCCACTCTCAAGACATTGCACTATCGGCTTCAAAAGGAAAAAGAAGTGCATCATGTTGGCATTCAATTGCTCATGATTGACAGTATTGGACCTTTCCATTGGGTAGATCGTGGCTCAACATTCTTTCCCTTGGGGGGAAATAAGAGGAAATGCCTCTCTCTTCAGAGTGTGTTTGATGCTGTCGTTCAGGATATCAAAAAGCTTCTGCTGGTGCATCCCATGCTAGTGATGGCTACAAAAGAAATCATATTGGGGAATGCATATGGCGGGGATGAGGTCAAACAAAATAAATCTTTGCTGGATGCCTCAGGGTTAAGAAATTTGGCAAGTAATACTCAACAACTTCCATATCGTGAGTATATGCCATCTGTCTGGCAGTCCTTTGTTACACACAAGATACTTGTGCGAGCTTCAGATGATCATATGCCTATAAGACACTACGAAGAACATTCCGTCTATTTGTCAGAATGGTTGTTGCCTTCAATTAGTTTTCGAGACAAGTTTACCGTAAAAGATGCTGGTATCGTTATTGTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

302

Amino Acids

34.52

Weight (kDa)

8.21

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520 AT5G64520
fragaria_vesca	FvH4_4g36590
malus_domestica	MD16G1006200.v1.1
prunus_persica	Prupe.1G344400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446351
rosa_laevigata	RLG00000005669
rosa_multiflora	Rmu_sc0002266.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386790
rosa_rugosa	Rorug04G0370600
rosa_samantha	Rh4AG432200 Rh4BG441400 Rh4CG458700 Rh4DG440100
rosa_wichuraiana	Rw4G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	44, 223, 633
AcsI	RAATTY	2 cut(s)	359, 685
AcuI	CTGAAG	2 cut(s)	512, 762
AfiI	CCNNNNNNNGG	2 cut(s)	268, 500
AgsI	TTSAA	5 cut(s)	131, 359, 398, 431, 849
AluBI	AGCT	4 cut(s)	88, 134, 568, 776
AluI	AGCT	4 cut(s)	88, 134, 568, 776
Alw21I	GWGCWC	2 cut(s)	90, 177
Alw26I	GTCTC	2 cut(s)	316, 855
Alw44I	GTGCAC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	94
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	359, 685
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	95, 455
AvaII	GGWCC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	177
BanII	GRGCYC	2 cut(s)	90, 276
Bbv12I	GWGCWC	2 cut(s)	90, 177
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	589, 739
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	316, 855
BfaI	CTAG	1 cut(s)	590
BisI	GCNGC	2 cut(s)	135, 223
BlsI	GCNGC	2 cut(s)	136, 224
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	95, 455
BmiI	GGNNCC	2 cut(s)	97, 273
BmsI	GCATC	5 cut(s)	424, 532, 589, 658, 871
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 500
Bse21I	CCTNAGG	1 cut(s)	673
Bse3DI	GCAATG	2 cut(s)	82, 380
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	4 cut(s)	120, 580, 643, 673
BseLI	CCNNNNNNNGG	2 cut(s)	268, 500
BseMI	GCAATG	2 cut(s)	82, 380
BseMII	CTCAG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	90, 177
BslI	CCNNNNNNNGG	2 cut(s)	268, 500
BsmAI	GTCTC	2 cut(s)	316, 855
BsmBI	CGTCTC	1 cut(s)	316
BsmI	GAATGC	3 cut(s)	147, 426, 628
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	90, 177, 276
Bsp143I	GATC	2 cut(s)	472, 784
BspACI	CCGC	3 cut(s)	44, 223, 633
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	686
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	97, 273
BsrDI	GCAATG	2 cut(s)	82, 380
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	472, 784
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	449, 874
Bst6I	CTCTTC	2 cut(s)	54, 531
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	1 cut(s)	673
BstF5I	GGATG	4 cut(s)	120, 580, 643, 673
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	475, 787
BstMAI	GTCTC	2 cut(s)	316, 855
BstMBI	GATC	2 cut(s)	472, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 324, 391, 586
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	738
Bsu36I	CCTNAGG	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	4 cut(s)	120, 580, 643, 673
Cac8I	GCNNGC	1 cut(s)	774
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	95, 455
CseI	GACGC	1 cut(s)	333
CviAII	CATG	5 cut(s)	319, 419, 439, 586, 903
DdeI	CTNAG	1 cut(s)	673
DpnI	GATC	2 cut(s)	474, 786
DpnII	GATC	2 cut(s)	472, 784
Eam1104I	CTCTTC	2 cut(s)	54, 531
EarI	CTCTTC	2 cut(s)	54, 531
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	2 cut(s)	90, 276
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	512, 762
Eco81I	CCTNAGG	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	2 cut(s)	90, 276
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	5 cut(s)	322, 422, 442, 589, 906
FatI	CATG	5 cut(s)	318, 418, 438, 585, 902
FauI	CCCGC	1 cut(s)	626
FauNDI	CATATG	2 cut(s)	628, 789
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	135, 223
FokI	GGATG	4 cut(s)	107, 567, 650, 680
FriOI	GRGCYC	2 cut(s)	90, 276
Fsp4HI	GCNGC	2 cut(s)	135, 223
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	135, 223
HaeIII	GGCC	1 cut(s)	96
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	322, 422, 442, 589, 906
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	175, 870
Hpy188I	TCNGA	4 cut(s)	247, 531, 781, 832
Hpy188III	TCNNGA	6 cut(s)	356, 376, 439, 554, 719, 860
Hpy8I	GTNNAC	2 cut(s)	175, 870
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	40, 855
HpyCH4III	ACNGT	2 cut(s)	449, 874
HpyCH4V	TGCA	8 cut(s)	17, 147, 175, 318, 385, 415, 580, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 324, 391, 586
HpyF3I	CTNAG	1 cut(s)	673
Hsp92II	CATG	5 cut(s)	322, 422, 442, 589, 906
HspAI	GCGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	2 cut(s)	472, 784
LmnI	GCTCC	4 cut(s)	22, 85, 190, 271
LpnPI	CCDG	6 cut(s)	539, 560, 650, 660, 724, 870
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	5 cut(s)	424, 532, 589, 658, 871
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	2 cut(s)	751, 898
MalI	GATC	2 cut(s)	474, 786
MboI	GATC	2 cut(s)	472, 784
MboII	GAAGA	4 cut(s)	32, 41, 518, 821
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	3 cut(s)	90, 177, 276
MluCI	AATT	6 cut(s)	142, 264, 359, 431, 685, 849
Mph1103I	ATGCAT	1 cut(s)	628
MseI	TTAA	1 cut(s)	680
MslI	CAYNNNNRTG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	3 cut(s)	147, 426, 628
MwoI	GCNNNNNNNGC	4 cut(s)	43, 324, 391, 586
NdeI	CATATG	2 cut(s)	628, 789
NdeII	GATC	2 cut(s)	472, 784
NlaIII	CATG	5 cut(s)	322, 422, 442, 589, 906
NlaIV	GGNNCC	2 cut(s)	97, 273
NmuCI	GTSAC	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	628
PagI	TCATGA	1 cut(s)	438
PctI	GAATGC	3 cut(s)	147, 426, 628
PkrI	GCNGC	2 cut(s)	136, 224
Psp124BI	GAGCTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	97, 273
PspPI	GGNCC	2 cut(s)	95, 455
RseI	CAYNNNNRTG	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	2 cut(s)	135, 223
Sau3AI	GATC	2 cut(s)	472, 784
Sau96I	GGNCC	2 cut(s)	95, 455
SduI	GDGCHC	3 cut(s)	90, 177, 276
SetI	ASST	6 cut(s)	90, 136, 460, 570, 645, 778
SfaNI	GCATC	5 cut(s)	424, 532, 589, 658, 871
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	6 cut(s)	142, 264, 359, 431, 685, 849
SsiI	CCGC	3 cut(s)	44, 223, 633
SspMI	CTAG	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	449, 874
TaqI	TCGA	2 cut(s)	55, 859
TasI	AATT	6 cut(s)	142, 264, 359, 431, 685, 849
TauI	GCSGC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	2 cut(s)	41, 196
TspGWI	ACGGA	5 cut(s)	35, 56, 284, 329, 808
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	359, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XspI	CTAG	1 cut(s)	590
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.