Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004282

Physical Location & Seq

Genomic Coordinates Forward (+)

26253408 .. 26256544

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCCCCGGAAGAGGAGCTACAGAGCAATGTATCGGTGGCTAGTTCTTCACCTACTAGCAATTGCATCTCCAGGAACACTCTAGGAGGACTTAAAGAGCATAACTACTTGGGTCTCTCTGATTGTTCTTCTGTTGGAAGCTCTACTCTCTCTCCCCTTGCTGAAGATGACAAAGCTACTATCAGCCTCAAGGCTACGGAGCTGACACTTGGTCTTCCTGGATCACAATCTCCTGCGAGAGACACAGAGCTTAACCTTTTGAGCCCAGCAAAGCTAGATGAGAAGCCATTCTTTCCTTTGCTTCCTTCTAAAGATGAGATATGCTCCTCCTCGCAAAAGAACAATGCATCGGGAAACAAAAGAGGCTTTTCTGACACAATGGATCAGTTTGCTGAAGCTAAAAGTTCAGTGTATACTGAGAAAAACTGGATGTTCCCTGAAGCAGCAGCCACCCAGTCTGTAACAAAGAAAGATGTGCCACAAAACATACCCAAAGGACAGTCTAGCACTACAAACAATAGCTCTAGTCCACCTGCAGCCAAGGCACAAATTGTCGGTTGGCCTCCAGTGAGATCCTACAGGAAGAACACATTGGCCACTACTTGTAAGAACAGTGACGAAGTTGATGGGAGGCCAGGTTCTGGGGCTCTCTTCGTGAAGGTCAGTATGGATGGTGCTCCTTATCTGAGGAAAGTTGACCTGAGGAGCTACACTAACTACGGGGAGCTTTCTTCAGCCTTGGAGAAAATGTTCACCACTTTCACTCTTGGTCAATGTGGATCTAATGGAGCTGCTGGGAAGGATATGCTTAGTGAGACCAAGCTCAAGGATCTTTTGAATGGAAAAGACTATGTGCTCACTTATGAGGATAAGGATGGTGACTGGATGCTTGTTGGAGATGTTCCGTGGGAGATGTTTATTGATGTCTGCAAGAAGCTGAAGATAATGAAAGGGTGTGATGCTATTGGGTTAGCTGCAGCTCCGAGAGCAATGGAGAAATCGAAGATGAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

338

Amino Acids

36.4

Weight (kDa)

6.06

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	65 - 327	2.8e-87	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65670 AT5G65670
fragaria_vesca	FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900
malus_domestica	MD01G1045800.v1.1
prunus_persica	Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1
pyrus_communis	pycom01g07180
rosa_chinensis	RchiOBHm_Chr2g0109881
rosa_multiflora	Rmu_sc0005173.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133900
rosa_rugosa	Rorug02G0163400 Rorug02G0163500 Rorug02G0163600.1 Rorug02G0163700
rosa_samantha	Rh2AG215500 Rh2BG225600 Rh2CG217500 Rh2DG221100
rosa_wichuraiana	Rw2G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	413
AclWI	GGATC	5 cut(s)	229, 390, 567, 787, 837
AcoI	YGGCCR	1 cut(s)	594
AcuI	CTGAAG	5 cut(s)	183, 414, 459, 717, 959
AfiI	CCNNNNNNNGG	2 cut(s)	13, 641
AgsI	TTSAA	1 cut(s)	838
AhdI	GACNNNNNGTC	1 cut(s)	210
AjnI	CCWGG	3 cut(s)	71, 217, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AloI	GAACNNNNNNTCC	4 cut(s)	622, 654, 734, 766
Alw21I	GWGCWC	2 cut(s)	679, 858
Alw26I	GTCTC	3 cut(s)	119, 234, 809
AlwI	GGATC	5 cut(s)	229, 390, 567, 787, 837
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	3 cut(s)	560, 594, 632
ApeKI	GCWGC	6 cut(s)	443, 446, 536, 791, 974, 977
Asp700I	GAANNNNTTC	2 cut(s)	287, 749
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	42, 745, 890
AxyI	CCTNAGG	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	596
BanII	GRGCYC	2 cut(s)	266, 649
BarI	GAAGNNNNNNTAC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	679, 858
BbvI	GCAGC	6 cut(s)	455, 458, 548, 778, 961, 989
BccI	CCATC	3 cut(s)	620, 665, 869
BciT130I	CCWGG	3 cut(s)	73, 219, 636
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	3 cut(s)	119, 234, 809
BfaI	CTAG	6 cut(s)	42, 57, 83, 275, 504, 525
BfmI	CTRYAG	4 cut(s)	20, 534, 577, 975
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	6 cut(s)	444, 447, 537, 792, 975, 978
BlsI	GCNGC	6 cut(s)	445, 448, 538, 793, 976, 979
Bme1390I	CCNGG	4 cut(s)	8, 73, 219, 636
BmeRI	GACNNNNNGTC	1 cut(s)	210
BmrFI	CCNGG	4 cut(s)	8, 73, 219, 636
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	4 cut(s)	75, 356, 876, 949
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	2 cut(s)	55, 549
BpuEI	CTTGAG	2 cut(s)	173, 809
BpuMI	CCSGG	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	226
BsaI	GGTCTC	2 cut(s)	119, 809
BsaJI	CCNNGG	4 cut(s)	6, 540, 738, 905
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 166, 622, 652, 734, 764
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 641
Bse1I	ACTGG	4 cut(s)	431, 454, 566, 887
Bse21I	CCTNAGG	1 cut(s)	701
Bse3DI	GCAATG	2 cut(s)	34, 996
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	73, 219, 636
BseDI	CCNNGG	4 cut(s)	6, 540, 738, 905
BseGI	GGATG	4 cut(s)	435, 676, 880, 891
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	13, 641
BseMI	GCAATG	2 cut(s)	34, 996
BseMII	CTCAG	3 cut(s)	408, 677, 692
BseNI	ACTGG	4 cut(s)	431, 454, 566, 887
BseRI	GAGGAG	4 cut(s)	29, 316, 319, 718
BseXI	GCAGC	6 cut(s)	455, 458, 548, 778, 961, 989
BseYI	CCCAGC	2 cut(s)	265, 794
BshFI	GGCC	3 cut(s)	562, 596, 634
BsiHKAI	GWGCWC	2 cut(s)	679, 858
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	13, 641
BsmAI	GTCTC	3 cut(s)	119, 234, 809
BsnI	GGCC	3 cut(s)	562, 596, 634
Bso31I	GGTCTC	2 cut(s)	119, 809
Bsp1286I	GDGCHC	4 cut(s)	266, 649, 679, 858
Bsp143I	GATC	5 cut(s)	221, 382, 572, 779, 829
BspANI	GGCC	3 cut(s)	562, 596, 634
BspCNI	CTCAG	3 cut(s)	409, 678, 693
BspMAI	CTGCAG	2 cut(s)	538, 979
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	5 cut(s)	229, 390, 567, 787, 837
BspTNI	GGTCTC	2 cut(s)	119, 809
BsrDI	GCAATG	2 cut(s)	34, 996
BsrI	ACTGG	4 cut(s)	431, 454, 566, 887
BssECI	CCNNGG	4 cut(s)	6, 540, 738, 905
BssMI	GATC	5 cut(s)	221, 382, 572, 779, 829
BssNAI	GTATAC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	540, 738
Bst1107I	GTATAC	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	73, 219, 636
Bst4CI	ACNGT	2 cut(s)	501, 614
Bst6I	CTCTTC	2 cut(s)	6, 656
BstDEI	CTNAG	4 cut(s)	417, 686, 701, 809
BstDSI	CCRYGG	1 cut(s)	905
BstF5I	GGATG	4 cut(s)	435, 676, 880, 891
BstKTI	GATC	5 cut(s)	224, 385, 575, 782, 832
BstMAI	GTCTC	3 cut(s)	119, 234, 809
BstMBI	GATC	5 cut(s)	221, 382, 572, 779, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 986
BstNI	CCWGG	3 cut(s)	73, 219, 636
BstSCI	CCNGG	4 cut(s)	6, 71, 217, 634
BstSFI	CTRYAG	4 cut(s)	20, 534, 577, 975
BstV1I	GCAGC	6 cut(s)	455, 458, 548, 778, 961, 989
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	3 cut(s)	572, 779, 829
BstYI	RGATCY	3 cut(s)	572, 779, 829
BstZ17I	GTATAC	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	562, 596, 634
BtgI	CCRYGG	1 cut(s)	905
BtsCI	GGATG	4 cut(s)	435, 676, 880, 891
BtsIMutI	CAGTG	3 cut(s)	414, 573, 619
BveI	ACCTGC	1 cut(s)	541
CaiI	CAGNNNCTG	1 cut(s)	641
DdeI	CTNAG	4 cut(s)	417, 686, 701, 809
DpnI	GATC	5 cut(s)	223, 384, 574, 781, 831
DpnII	GATC	5 cut(s)	221, 382, 572, 779, 829
DriI	GACNNNNNGTC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	2 cut(s)	6, 656
Eam1105I	GACNNNNNGTC	1 cut(s)	210
EarI	CTCTTC	2 cut(s)	6, 656
Eco130I	CCWWGG	2 cut(s)	540, 738
Eco24I	GRGCYC	2 cut(s)	266, 649
Eco31I	GGTCTC	2 cut(s)	119, 809
Eco57I	CTGAAG	5 cut(s)	183, 414, 459, 717, 959
Eco81I	CCTNAGG	1 cut(s)	701
EcoRII	CCWGG	3 cut(s)	71, 217, 634
EcoT14I	CCWWGG	2 cut(s)	540, 738
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	266, 649
ErhI	CCWWGG	2 cut(s)	540, 738
FaiI	YATR	8 cut(s)	102, 322, 414, 488, 668, 806, 852, 864
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	6 cut(s)	444, 447, 537, 792, 975, 978
FokI	GGATG	4 cut(s)	442, 683, 887, 898
FriOI	GRGCYC	2 cut(s)	266, 649
Fsp4HI	GCNGC	6 cut(s)	444, 447, 537, 792, 975, 978
FspBI	CTAG	6 cut(s)	42, 57, 83, 275, 504, 525
GluI	GCNGC	6 cut(s)	444, 447, 537, 792, 975, 978
GsaI	CCCAGC	2 cut(s)	269, 798
GsuI	CTGGAG	2 cut(s)	55, 549
HaeIII	GGCC	3 cut(s)	562, 596, 634
HapII	CCGG	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	42, 745, 890
Hpy166II	GTNNAC	4 cut(s)	414, 530, 697, 753
Hpy188I	TCNGA	4 cut(s)	121, 373, 687, 984
Hpy188III	TCNNGA	2 cut(s)	351, 655
Hpy8I	GTNNAC	4 cut(s)	414, 530, 697, 753
HpyAV	CCTTC	3 cut(s)	315, 652, 793
HpyCH4III	ACNGT	2 cut(s)	501, 614
HpyCH4V	TGCA	5 cut(s)	66, 347, 536, 930, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 986
HpyF3I	CTNAG	4 cut(s)	417, 686, 701, 809
Kzo9I	GATC	5 cut(s)	221, 382, 572, 779, 829
LmnI	GCTCC	8 cut(s)	16, 199, 329, 682, 705, 724, 788, 985
Lsp1109I	GCAGC	6 cut(s)	455, 458, 548, 778, 961, 989
LweI	GCATC	4 cut(s)	75, 356, 876, 949
MaeI	CTAG	6 cut(s)	42, 57, 83, 275, 504, 525
MaeIII	GTNAC	3 cut(s)	460, 614, 878
MalI	GATC	5 cut(s)	223, 384, 574, 781, 831
MboI	GATC	5 cut(s)	221, 382, 572, 779, 829
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	3 cut(s)	572, 779, 829
MhlI	GDGCHC	4 cut(s)	266, 649, 679, 858
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	2 cut(s)	61, 549
MluNI	TGGCCA	1 cut(s)	596
MmeI	TCCRAC	2 cut(s)	115, 874
Mox20I	TGGCCA	1 cut(s)	596
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	2 cut(s)	287, 749
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	3 cut(s)	93, 252, 1015
Msp20I	TGGCCA	1 cut(s)	596
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	4 cut(s)	8, 73, 219, 636
MunI	CAATTG	1 cut(s)	61
MvaI	CCWGG	3 cut(s)	73, 219, 636
MwoI	GCNNNNNNNGC	2 cut(s)	542, 986
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	5 cut(s)	221, 382, 572, 779, 829
NmuCI	GTSAC	2 cut(s)	614, 878
NsiI	ATGCAT	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	541
PdmI	GAANNNNTTC	2 cut(s)	287, 749
PflMI	CCANNNNNTGG	1 cut(s)	641
PfoI	TCCNGGA	2 cut(s)	71, 217
PkrI	GCNGC	6 cut(s)	445, 448, 538, 793, 976, 979
Psp6I	CCWGG	3 cut(s)	71, 217, 634
PspFI	CCCAGC	2 cut(s)	265, 794
PspGI	CCWGG	3 cut(s)	71, 217, 634
PstI	CTGCAG	2 cut(s)	538, 979
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	3 cut(s)	572, 779, 829
SaqAI	TTAA	3 cut(s)	93, 252, 1015
SatI	GCNGC	6 cut(s)	444, 447, 537, 792, 975, 978
Sau3AI	GATC	5 cut(s)	221, 382, 572, 779, 829
ScrFI	CCNGG	4 cut(s)	8, 73, 219, 636
SduI	GDGCHC	4 cut(s)	266, 649, 679, 858
SfaNI	GCATC	4 cut(s)	75, 356, 876, 949
SfcI	CTRYAG	4 cut(s)	20, 534, 577, 975
SmlI	CTYRAG	2 cut(s)	188, 824
SmoI	CTYRAG	2 cut(s)	188, 824
Sse9I	AATT	2 cut(s)	61, 549
SspMI	CTAG	6 cut(s)	42, 57, 83, 275, 504, 525
StyD4I	CCNGG	4 cut(s)	6, 71, 217, 634
StyI	CCWWGG	2 cut(s)	540, 738
TaaI	ACNGT	2 cut(s)	501, 614
TaqI	TCGA	1 cut(s)	1001
TasI	AATT	2 cut(s)	61, 549
Tru1I	TTAA	3 cut(s)	93, 252, 1015
Tru9I	TTAA	3 cut(s)	93, 252, 1015
TscAI	CASTG	3 cut(s)	414, 573, 619
TseFI	GTSAC	2 cut(s)	614, 878
TseI	GCWGC	6 cut(s)	443, 446, 536, 791, 974, 977
Tsp45I	GTSAC	2 cut(s)	614, 878
TspDTI	ATGAA	1 cut(s)	962
TspGWI	ACGGA	2 cut(s)	212, 894
TspRI	CASTG	3 cut(s)	414, 573, 619
Van91I	CCANNNNNTGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	2 cut(s)	287, 749
XspI	CTAG	6 cut(s)	42, 57, 83, 275, 504, 525
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.