Rorug02G0163400

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004282
Physical Location & Seq
Reverse (-)
14580018 .. 14583998
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0163400.1

Sequence Viewer

Length: 1443 bp
ATGATGATGAACAAGACTCAGACCCAGAACAAGTCTCAGTATGAGCTTTCCAGAGATGAAAGAATCAAAGCAAACCTTGAACGAATGCAGAAGCTCGGCCTTGCTGACATCTCGCTTGAGCTCAAGTCTCAGTTTCAGGCCAAGCGCGCCACAAAGAGCTTCTCAAACCGTACGACGCCGTCTTCTGTAGCCTCTCCTATTCGGAGTCCCGGACCCATTCGCCGATCTTCTAGATTGCAGAATTCAACTCCAGTAAGCTACACGGAGGCGCCTCTGGGGAAGAAGGATGAGGGTAAGGAAATGGGTAGTATTATGCTGGAGGAGGGTGCAAGACCGGAGATTTACACAGAAGAGCATGAAAAGCTGTTGGGTCACACTGAAAAGAGCTGGACTCTTTTTGGGGATGGTTATGGGAAAGATGGAAAGCGACTTTATGACCCAGTTAGAGGAAAGACTTGTCATCAGTGCAGACAGAAAACTCTGGGATATCGTACTCAATGCAGCCAATGCAACAGGCTCCATGGACAGTTCTGTGGAGACTGTTTGTACATGAGATATGGGGAGCATGTACTTGAAGCTGTTGAGAATCCAAAGTGGATTTGCCCCGTCTGTCGTGGAATTTGCAACTGTAGTTTTTGTCGGACAGCAAAAGGATGGCCTCCAACTGGCCTTCTCTACAGGAAGATAGTACAACTAGGATTCAAATCAGTTGCACACTATCTCATTCAAACCCGACGTGCAGAGACAAGTTTAGTGCAAAATCCAGAAACTCCCGAGCAAGTTTCTGGGAGAAGGTTACTGCCCTTCCCAGATACGGATGAAGAAAATCTCAAGGCTGATCATAATGACCTTGGACCGTTAACACCTCTAGGTGAAGAGAAAGGAGACAATGAGTTTAAGAGTGAAAAAGAGGATGAAAAGCAGAATAATGCAGATCTAGACATCAATAACCAAGCTTCTGCAAAGAGGACATTGTCCTTTCCAGATATTGACCACATGGTTGGTGACCACCTTGGATTGCCAAAGCTTCAATCTGAGAGCAGCACTGGTGATCATAAAGAAGAGAGTAAAGTGGATTGTGTGGATTTGAAACTTGGTGATAGTACTAATGGATTAGAAACTGCCTCAAAGCCCAAAAAGAAGCGGGCTCGGGATAATGAACCAAGTGCTGATAGTATTGGTGGAAGATTAAGGCGGAGACGTGATGATTCTTCAGATGCAAAAGACAAAATCCCAGATGGTAAGCAGGATGCTAACAAAATCTTGTCGGAGACGGAAGTCAAAAAAGAAATCTGTGTGCTGTTTACTGATAATAAAGATGGTGGCGATAGCTGTACCGTATTGAGAGGAAGTTCAAAGCTCAAGAAGAAGCACATTCGTGTGGCTGAACCAAGTGCAGACAGTGTTGCCGGAAGACTGAGGCAGAGGCGTAAGGGCAATTAG

Protein Analysis

480

Amino Acids

53.88

Weight (kDa)

8.94

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 145 - 241 5.7e-40 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 1144, 1195
AcsI RAATTY 2 cut(s) 241, 618
AcuI CTGAAG 1 cut(s) 1197
AcyI GRCGYC 2 cut(s) 176, 269
AfaI GTAC 7 cut(s) 172, 493, 548, 570, 690, 1105, 1336
AfiI CCNNNNNNNGG 3 cut(s) 446, 665, 814
AgsI TTSAA 8 cut(s) 80, 246, 575, 703, 728, 1031, 1090, 1356
AjiI CACGTC 2 cut(s) 737, 1202
AleI CACNNNNGTG 1 cut(s) 1377
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 7 cut(s) 39, 132, 531, 737, 879, 1192, 1265
Ama87I CYCGRG 2 cut(s) 773, 1149
AoxI GGCC 4 cut(s) 97, 138, 656, 667
ApeKI GCWGC 2 cut(s) 501, 1041
ApoI RAATTY 2 cut(s) 241, 618
AspLEI GCGC 3 cut(s) 147, 149, 271
AspS9I GGNCC 2 cut(s) 212, 854
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 4 cut(s) 884, 1016, 1061, 1109
AvaI CYCGRG 2 cut(s) 773, 1149
AvaII GGWCC 2 cut(s) 212, 854
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 123, 1150
BbsI GAAGAC 2 cut(s) 174, 1420
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 513, 1053
BccI CCATC 5 cut(s) 398, 413, 648, 1232, 1313
BceAI ACGGC 1 cut(s) 163
BclI TGATCA 2 cut(s) 838, 1051
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 7 cut(s) 39, 132, 531, 737, 879, 1192, 1265
BfaI CTAG 4 cut(s) 231, 695, 869, 938
BfmI CTRYAG 3 cut(s) 186, 628, 676
BfoI RGCGCY 1 cut(s) 272
BglII AGATCT 1 cut(s) 934
BisI GCNGC 2 cut(s) 502, 1042
BlsI GCNGC 2 cut(s) 503, 1043
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 212, 854
BmeT110I CYCGRG 2 cut(s) 773, 1149
BmgBI CACGTC 2 cut(s) 737, 1202
BmgT120I GGNCC 2 cut(s) 212, 854
BmiI GGNNCC 3 cut(s) 214, 270, 518
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 1207, 1240
BmuI ACTGGG 1 cut(s) 434
BoxI GACNNNNGTC 1 cut(s) 1277
BpiI GAAGAC 2 cut(s) 174, 1420
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 2 cut(s) 234, 338
BpuEI CTTGAG 4 cut(s) 107, 137, 815, 1346
BpuMI CCSGG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 703
BsaHI GRCGYC 2 cut(s) 176, 269
BsaJI CCNNGG 3 cut(s) 520, 850, 1012
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 665, 814
Bse1I ACTGG 4 cut(s) 251, 440, 670, 1051
Bse8I GATNNNNATC 1 cut(s) 703
BseDI CCNNGG 3 cut(s) 520, 850, 1012
BseGI GGATG 6 cut(s) 292, 409, 659, 823, 919, 1255
BseJI GATNNNNATC 1 cut(s) 703
BseLI CCNNNNNNNGG 3 cut(s) 446, 665, 814
BseMII CTCAG 5 cut(s) 32, 50, 143, 1026, 1409
BseNI ACTGG 4 cut(s) 251, 440, 670, 1051
BsePI GCGCGC 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 513, 1053
BsgI GTGCAG 3 cut(s) 487, 759, 1416
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 4 cut(s) 99, 140, 658, 669
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 2 cut(s) 773, 1149
BsiSI CCGG 3 cut(s) 210, 335, 1410
BsiWI CGTACG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 446, 665, 814
BsmAI GTCTC 7 cut(s) 39, 132, 531, 737, 879, 1192, 1265
BsmBI CGTCTC 2 cut(s) 1192, 1265
BsmFI GGGAC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 4 cut(s) 99, 140, 658, 669
BsoBI CYCGRG 2 cut(s) 773, 1149
Bsp1286I GDGCHC 2 cut(s) 123, 1150
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 224, 838, 934, 1051
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 2 cut(s) 1144, 1195
BspANI GGCC 4 cut(s) 99, 140, 658, 669
BspCNI CTCAG 5 cut(s) 31, 49, 142, 1027, 1410
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 214, 270, 518
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 4 cut(s) 251, 440, 670, 1051
BssECI CCNNGG 3 cut(s) 520, 850, 1012
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 4 cut(s) 224, 838, 934, 1051
BssNI GRCGYC 2 cut(s) 176, 269
BssT1I CCWWGG 3 cut(s) 520, 850, 1012
Bst4CI ACNGT 7 cut(s) 170, 528, 542, 629, 858, 1339, 1403
Bst6I CTCTTC 3 cut(s) 345, 870, 1056
BstACI GRCGYC 2 cut(s) 176, 269
BstAPI GCANNNNNTGC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 147, 1146
BstDEI CTNAG 5 cut(s) 18, 36, 129, 1035, 1418
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 6 cut(s) 292, 409, 659, 823, 919, 1255
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 147, 149, 271
BstKTI GATC 4 cut(s) 227, 841, 937, 1054
BstMAI GTCTC 7 cut(s) 39, 132, 531, 737, 879, 1192, 1265
BstMBI GATC 4 cut(s) 224, 838, 934, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 146, 361, 507
BstNSI RCATGY 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 1277
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 3 cut(s) 186, 628, 676
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 513, 1053
BstV2I GAAGAC 2 cut(s) 174, 1420
BstX2I RGATCY 1 cut(s) 934
BstXI CCANNNNNNTGG 1 cut(s) 1001
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 4 cut(s) 99, 140, 658, 669
BtgI CCRYGG 1 cut(s) 520
BtrI CACGTC 2 cut(s) 737, 1202
BtsCI GGATG 6 cut(s) 292, 409, 659, 823, 919, 1255
BtsIMutI CAGTG 4 cut(s) 375, 470, 1044, 1408
Cac8I GCNNGC 2 cut(s) 147, 1146
CfoI GCGC 3 cut(s) 147, 149, 271
Cfr13I GGNCC 2 cut(s) 212, 854
CseI GACGC 1 cut(s) 184
Csp6I GTAC 7 cut(s) 171, 492, 547, 569, 689, 1104, 1335
CviAII CATG 5 cut(s) 356, 521, 550, 566, 997
CviQI GTAC 7 cut(s) 171, 492, 547, 569, 689, 1104, 1335
DdeI CTNAG 5 cut(s) 18, 36, 129, 1035, 1418
DinI GGCGCC 1 cut(s) 270
DpnI GATC 4 cut(s) 226, 840, 936, 1053
DpnII GATC 4 cut(s) 224, 838, 934, 1051
Eam1104I CTCTTC 3 cut(s) 345, 870, 1056
EarI CTCTTC 3 cut(s) 345, 870, 1056
EciI GGCGGA 1 cut(s) 1210
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 3 cut(s) 520, 850, 1012
Eco24I GRGCYC 2 cut(s) 123, 1150
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 2 cut(s) 212, 854
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 1197
Eco88I CYCGRG 2 cut(s) 773, 1149
Eco91I GGTNACC 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 3 cut(s) 520, 850, 1012
EcoT38I GRGCYC 2 cut(s) 123, 1150
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 3 cut(s) 520, 850, 1012
Esp3I CGTCTC 2 cut(s) 1192, 1265
FaeI CATG 5 cut(s) 359, 524, 553, 569, 1000
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 1 cut(s) 192
FatI CATG 5 cut(s) 355, 520, 549, 565, 996
FauI CCCGC 1 cut(s) 1137
FbaI TGATCA 2 cut(s) 838, 1051
Fnu4HI GCNGC 2 cut(s) 502, 1042
FokI GGATG 6 cut(s) 299, 416, 666, 830, 926, 1262
FriOI GRGCYC 2 cut(s) 123, 1150
Fsp4HI GCNGC 2 cut(s) 502, 1042
FspBI CTAG 4 cut(s) 231, 695, 869, 938
GlaI GCGC 3 cut(s) 146, 148, 270
GluI GCNGC 2 cut(s) 502, 1042
GsuI CTGGAG 2 cut(s) 234, 338
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 4 cut(s) 99, 140, 658, 669
HapII CCGG 3 cut(s) 210, 335, 1410
HgaI GACGC 1 cut(s) 184
HhaI GCGC 3 cut(s) 147, 149, 271
Hin1I GRCGYC 2 cut(s) 176, 269
Hin1II CATG 5 cut(s) 359, 524, 553, 569, 1000
Hin6I GCGC 3 cut(s) 145, 147, 269
HinP1I GCGC 3 cut(s) 145, 147, 269
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HindIII AAGCTT 2 cut(s) 954, 1025
HinfI GANTC 7 cut(s) 16, 63, 205, 391, 586, 699, 1208
HpaI GTTAAC 1 cut(s) 861
HpaII CCGG 3 cut(s) 210, 335, 1410
HphI GGTGA 4 cut(s) 884, 1016, 1061, 1109
Hpy166II GTNNAC 2 cut(s) 861, 1305
Hpy188I TCNGA 6 cut(s) 21, 204, 642, 1036, 1216, 1270
Hpy188III TCNNGA 8 cut(s) 51, 231, 764, 773, 938, 983, 1151, 1363
Hpy8I GTNNAC 2 cut(s) 861, 1305
Hpy99I CGWCG 2 cut(s) 178, 738
HpyAV CCTTC 4 cut(s) 277, 680, 786, 814
HpyCH4III ACNGT 7 cut(s) 170, 528, 542, 629, 858, 1339, 1403
HpyCH4IV ACGT 2 cut(s) 736, 1201
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 361, 507
HpyF3I CTNAG 5 cut(s) 18, 36, 129, 1035, 1418
HpySE526I ACGT 2 cut(s) 736, 1201
Hsp92I GRCGYC 2 cut(s) 176, 269
Hsp92II CATG 5 cut(s) 359, 524, 553, 569, 1000
HspAI GCGC 3 cut(s) 145, 147, 269
KasI GGCGCC 1 cut(s) 268
Ksp22I TGATCA 2 cut(s) 838, 1051
KspAI GTTAAC 1 cut(s) 861
Kzo9I GATC 4 cut(s) 224, 838, 934, 1051
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 522, 562
Lsp1109I GCAGC 2 cut(s) 513, 1053
LweI GCATC 2 cut(s) 1207, 1240
MaeI CTAG 4 cut(s) 231, 695, 869, 938
MaeII ACGT 2 cut(s) 736, 1201
MaeIII GTNAC 3 cut(s) 371, 795, 1004
MalI GATC 4 cut(s) 226, 840, 936, 1053
MboI GATC 4 cut(s) 224, 838, 934, 1051
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 2 cut(s) 123, 1150
MluCI AATT 3 cut(s) 241, 618, 1438
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 3 cut(s) 10, 214, 385
MmeI TCCRAC 3 cut(s) 620, 686, 1248
MseI TTAA 3 cut(s) 860, 897, 1190
MslI CAYNNNNRTG 2 cut(s) 1377, 1379
MspI CCGG 3 cut(s) 210, 335, 1410
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 90
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 146, 361, 507
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 520
NdeII GATC 4 cut(s) 224, 838, 934, 1051
NlaIII CATG 5 cut(s) 359, 524, 553, 569, 1000
NlaIV GGNNCC 3 cut(s) 214, 270, 518
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 371, 1004
NspI RCATGY 1 cut(s) 569
OliI CACNNNNGTG 1 cut(s) 1377
PauI GCGCGC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 4 cut(s) 63, 586, 699, 1208
Pfl23II CGTACG 1 cut(s) 170
PflFI GACNNNGTC 2 cut(s) 178, 973
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 503, 1043
PleI GAGTC 3 cut(s) 10, 213, 385
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 3 cut(s) 10, 213, 385
PshAI GACNNNNGTC 1 cut(s) 1277
Psp124BI GAGCTC 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 1004
PspLI CGTACG 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 214, 270, 518
PspPI GGNCC 2 cut(s) 212, 854
PsuI RGATCY 1 cut(s) 934
PsyI GACNNNGTC 2 cut(s) 178, 973
PteI GCGCGC 1 cut(s) 145
RsaI GTAC 7 cut(s) 172, 493, 548, 570, 690, 1105, 1336
RsaNI GTAC 7 cut(s) 171, 492, 547, 569, 689, 1104, 1335
RseI CAYNNNNRTG 2 cut(s) 1377, 1379
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 860, 897, 1190
SatI GCNGC 2 cut(s) 502, 1042
Sau3AI GATC 4 cut(s) 224, 838, 934, 1051
Sau96I GGNCC 2 cut(s) 212, 854
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 3 cut(s) 10, 214, 385
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 123, 1150
SfaNI GCATC 2 cut(s) 1207, 1240
SfcI CTRYAG 3 cut(s) 186, 628, 676
SfoI GGCGCC 1 cut(s) 270
SinI GGWCC 2 cut(s) 212, 854
SmiMI CAYNNNNRTG 2 cut(s) 1377, 1379
SmlI CTYRAG 4 cut(s) 116, 122, 830, 1361
SmoI CTYRAG 4 cut(s) 116, 122, 830, 1361
Sse9I AATT 3 cut(s) 241, 618, 1438
SsiI CCGC 2 cut(s) 1144, 1195
SspDI GGCGCC 1 cut(s) 268
SspMI CTAG 4 cut(s) 231, 695, 869, 938
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 3 cut(s) 520, 850, 1012
TaaI ACNGT 7 cut(s) 170, 528, 542, 629, 858, 1339, 1403
TaiI ACGT 2 cut(s) 739, 1204
TasI AATT 3 cut(s) 241, 618, 1438
TatI WGTACW 4 cut(s) 546, 568, 688, 1103
TfiI GAWTC 4 cut(s) 63, 586, 699, 1208
Tru1I TTAA 3 cut(s) 860, 897, 1190
Tru9I TTAA 3 cut(s) 860, 897, 1190
TscAI CASTG 4 cut(s) 382, 470, 1051, 1408
TseFI GTSAC 2 cut(s) 371, 1004
TseI GCWGC 2 cut(s) 501, 1041
Tsp45I GTSAC 2 cut(s) 371, 1004
TspDTI ATGAA 6 cut(s) 23, 72, 372, 834, 930, 1173
TspGWI ACGGA 3 cut(s) 278, 830, 1289
TspRI CASTG 4 cut(s) 382, 470, 1051, 1408
Tth111I GACNNNGTC 2 cut(s) 178, 973
VpaK11BI GGWCC 2 cut(s) 212, 854
XapI RAATTY 2 cut(s) 241, 618
XbaI TCTAGA 2 cut(s) 230, 937
XceI RCATGY 1 cut(s) 569
XspI CTAG 4 cut(s) 231, 695, 869, 938
ZrmI AGTACT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.