Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004282

Physical Location & Seq

Genomic Coordinates Reverse (-)

21953549 .. 21959024

Gene Structure 5476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCTCCACCACTGCTGGGTGGTGAGGGGGAAGGGAAAAGCAATGGATCGATGGTAGCTTGTTCTCCCTCTATGGACATGATCCCTCAGAACAGCTCAGGACTGAAAGAGCGTAACTACCTTGGGTTGTCAGATTGTTCTTCAGTTGACAGCTCCACTGTCTCAAGCTTGTCAGAGGAGAATAAGAGCAAGTTCAATTTTAAGGCTACAGAGTTGAGGCTTGGTCTTCCTGGATCCCAATCACCAGAACGACAATCAGAGCTTTGCTTGCTTGATGAGAAGCCACTGTTTCCTTTGCTTCCTTCAAAAGATGGAATATGTTCCTCATCCCAGAAAAATGTTGTTTCAGGCAACAAAAGAGGCTTTTCTGATACCATGGACGGATTCTCAGAGGTGAAAAGTTCTGTATATAATGAAGGAAATTGGATGTTTCCTGCAGCTGGTTCTGATTCTGAATCACCAGAGTCTGTCGGACAAGGTAAGTTTCCTGTGAGTTCAATCAATGTGATGCTCTCATCCAGGACTTCTGGGACTCAGCCAACCAAGATGAAAGATATTATGACCAAATCTTCAAAAGATCAGTCCAATGCTACAAATGGAGCTGGCCAGAACCATGTGGGCGCTTCTAACAACAACAGTGCCCCAGCTGCTAAGGCACAAGTTGTAGGGTGGCCTCCAATAAGATCTTTTAGGAAGAATTTAACCACCGCTTCAAAGAACAATGATGAAGTTGATGGAAAACCTGGTCGAGGTGCTCTTTTTGTCAAGGTCAGCATGGATGGTGCTCCCTACCTGAGGAAGGTAGATCTCAGAACCTACTCAACATATCAAGAGTTGTCTTCTGCTCTGGAAAAGATGTTCAGCTGTTTTACCATCGGTAAAAATTGCTCGAATTTATATTCTGCCTTTATTTCATCTTTGCTTAAATTGCTGGATGTTTGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

315

Amino Acids

33.65

Weight (kDa)

8.38

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	69 - 296	5.8e-47	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65670 AT5G65670
fragaria_vesca	FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900
malus_domestica	MD01G1045800.v1.1
prunus_persica	Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1
pyrus_communis	pycom01g07180
rosa_chinensis	RchiOBHm_Chr2g0109881
rosa_multiflora	Rmu_sc0005173.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133900
rosa_rugosa	Rorug02G0163400 Rorug02G0163500 Rorug02G0163600.1 Rorug02G0163700
rosa_samantha	Rh2AG215500 Rh2BG225600 Rh2CG217500 Rh2DG221100
rosa_wichuraiana	Rw2G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	4 cut(s)	55, 76, 228, 241
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	697, 892
AcuI	CTGAAG	1 cut(s)	126
AfiI	CCNNNNNNNGG	5 cut(s)	17, 440, 749, 795, 799
AgsI	TTSAA	5 cut(s)	196, 306, 498, 573, 714
AjnI	CCWGG	3 cut(s)	229, 518, 742
AloI	GAACNNNNNNTCC	2 cut(s)	842, 874
AluBI	AGCT	9 cut(s)	59, 96, 153, 168, 262, 440, 602, 647, 864
AluI	AGCT	9 cut(s)	59, 96, 153, 168, 262, 440, 602, 647, 864
Alw21I	GWGCWC	2 cut(s)	757, 787
Alw26I	GTCTC	2 cut(s)	9, 166
AlwI	GGATC	4 cut(s)	55, 76, 228, 241
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	604, 671
ApeKI	GCWGC	2 cut(s)	437, 647
ApoI	RAATTY	2 cut(s)	697, 892
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	623
AsuHPI	GGTGA	4 cut(s)	35, 234, 406, 450
AxyI	CCTNAGG	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	218, 831
Bbv12I	GWGCWC	2 cut(s)	757, 787
BbvI	GCAGC	2 cut(s)	449, 634
BccI	CCATC	5 cut(s)	46, 305, 728, 773, 881
BciT130I	CCWGG	3 cut(s)	231, 520, 744
BcoDI	GTCTC	2 cut(s)	9, 166
BfmI	CTRYAG	2 cut(s)	207, 435
BfoI	RGCGCY	1 cut(s)	624
BglII	AGATCT	2 cut(s)	683, 805
BisI	GCNGC	2 cut(s)	438, 648
BlsI	GCNGC	2 cut(s)	439, 649
Bme1390I	CCNGG	3 cut(s)	231, 520, 744
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	231, 520, 744
BmsI	GCATC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	218, 831
Bpu10I	CCTNAGC	2 cut(s)	97, 651
BpuEI	CTTGAG	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	121, 375
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 440, 749, 795, 799
Bse21I	CCTNAGG	1 cut(s)	794
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	231, 520, 744
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	121, 375
BseGI	GGATG	5 cut(s)	326, 432, 515, 784, 940
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	5 cut(s)	17, 440, 749, 795, 799
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	6 cut(s)	101, 111, 402, 548, 785, 823
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	449, 634
BseYI	CCCAGC	2 cut(s)	16, 643
BshFI	GGCC	2 cut(s)	606, 673
BshVI	ATCGAT	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	757, 787
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	5 cut(s)	17, 440, 749, 795, 799
BsmAI	GTCTC	2 cut(s)	9, 166
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	606, 673
Bsp1286I	GDGCHC	3 cut(s)	643, 757, 787
Bsp143I	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	2 cut(s)	606, 673
BspCNI	CTCAG	6 cut(s)	100, 110, 401, 547, 786, 822
BspDI	ATCGAT	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	4 cut(s)	55, 76, 228, 241
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	121, 375
BssMI	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
BssT1I	CCWWGG	2 cut(s)	121, 375
Bst2UI	CCWGG	3 cut(s)	231, 520, 744
Bst4CI	ACNGT	3 cut(s)	160, 288, 638
BstC8I	GCNNGC	2 cut(s)	269, 604
BstDEI	CTNAG	7 cut(s)	87, 97, 388, 534, 651, 794, 809
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	3 cut(s)	747, 793, 797
BstF5I	GGATG	5 cut(s)	326, 432, 515, 784, 940
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	6 cut(s)	50, 84, 236, 580, 686, 808
BstMAI	GTCTC	2 cut(s)	9, 166
BstMBI	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	268, 647, 653, 928
BstNI	CCWGG	3 cut(s)	231, 520, 744
BstSCI	CCNGG	3 cut(s)	229, 518, 742
BstSFI	CTRYAG	2 cut(s)	207, 435
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	449, 634
BstV2I	GAAGAC	2 cut(s)	218, 831
BstX2I	RGATCY	3 cut(s)	233, 683, 805
BstYI	RGATCY	3 cut(s)	233, 683, 805
Bsu15I	ATCGAT	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	794
BsuRI	GGCC	2 cut(s)	606, 673
BsuTUI	ATCGAT	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	5 cut(s)	326, 432, 515, 784, 940
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	4 cut(s)	11, 156, 284, 643
Cac8I	GCNNGC	2 cut(s)	269, 604
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	623
ClaI	ATCGAT	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	742
CviAII	CATG	4 cut(s)	79, 376, 614, 775
DdeI	CTNAG	7 cut(s)	87, 97, 388, 534, 651, 794, 809
DpnI	GATC	6 cut(s)	49, 83, 235, 579, 685, 807
DpnII	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
EaeI	YGGCCR	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	121, 375
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	794
EcoNI	CCTNNNNNAGG	3 cut(s)	747, 793, 797
EcoRII	CCWGG	3 cut(s)	229, 518, 742
EcoT14I	CCWWGG	2 cut(s)	121, 375
ErhI	CCWWGG	2 cut(s)	121, 375
FaeI	CATG	4 cut(s)	82, 379, 617, 778
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	4 cut(s)	78, 375, 613, 774
Fnu4HI	GCNGC	2 cut(s)	438, 648
FokI	GGATG	4 cut(s)	313, 439, 502, 791
Fsp4HI	GCNGC	2 cut(s)	438, 648
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	2 cut(s)	438, 648
GsaI	CCCAGC	2 cut(s)	20, 647
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	606, 673
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	4 cut(s)	82, 379, 617, 778
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	5 cut(s)	384, 449, 455, 464, 532
HphI	GGTGA	4 cut(s)	35, 234, 406, 450
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	99, 830, 848
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	4 cut(s)	26, 312, 410, 793
HpyCH4III	ACNGT	3 cut(s)	160, 288, 638
HpyCH4V	TGCA	2 cut(s)	437, 942
HpyF10VI	GCNNNNNNNGC	4 cut(s)	268, 647, 653, 928
HpyF3I	CTNAG	7 cut(s)	87, 97, 388, 534, 651, 794, 809
Hsp92II	CATG	4 cut(s)	82, 379, 617, 778
HspAI	GCGC	1 cut(s)	621
Kzo9I	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
LmnI	GCTCC	3 cut(s)	158, 599, 790
Lsp1109I	GCAGC	2 cut(s)	449, 634
LweI	GCATC	1 cut(s)	498
MabI	ACCWGGT	1 cut(s)	742
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	6 cut(s)	49, 83, 235, 579, 685, 807
MboI	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
MboII	GAAGA	5 cut(s)	132, 218, 561, 706, 831
MflI	RGATCY	3 cut(s)	233, 683, 805
MhlI	GDGCHC	3 cut(s)	643, 757, 787
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	6 cut(s)	196, 421, 697, 883, 892, 926
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	2 cut(s)	473, 526
MmeI	TCCRAC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	606
MroXI	GAANNNNTTC	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	3 cut(s)	201, 701, 924
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	3 cut(s)	440, 647, 864
MspR9I	CCNGG	3 cut(s)	231, 520, 744
MvaI	CCWGG	3 cut(s)	231, 520, 744
MwoI	GCNNNNNNNGC	4 cut(s)	268, 647, 653, 928
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
NlaIII	CATG	4 cut(s)	82, 379, 617, 778
NlaIV	GGNNCC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	384, 449, 455
PfoI	TCCNGGA	2 cut(s)	229, 518
PkrI	GCNGC	2 cut(s)	439, 649
PleI	GAGTC	2 cut(s)	472, 526
PpsI	GAGTC	2 cut(s)	472, 526
Psp6I	CCWGG	3 cut(s)	229, 518, 742
PspFI	CCCAGC	2 cut(s)	16, 643
PspGI	CCWGG	3 cut(s)	229, 518, 742
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	3 cut(s)	233, 683, 805
PvuII	CAGCTG	3 cut(s)	440, 647, 864
SaqAI	TTAA	3 cut(s)	201, 701, 924
SatI	GCNGC	2 cut(s)	438, 648
Sau3AI	GATC	6 cut(s)	47, 81, 233, 577, 683, 805
SchI	GAGTC	2 cut(s)	473, 526
ScrFI	CCNGG	3 cut(s)	231, 520, 744
SduI	GDGCHC	3 cut(s)	643, 757, 787
SexAI	ACCWGGT	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	2 cut(s)	207, 435
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	6 cut(s)	196, 421, 697, 883, 892, 926
SsiI	CCGC	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	229, 518, 742
StyI	CCWWGG	2 cut(s)	121, 375
TaaI	ACNGT	3 cut(s)	160, 288, 638
TaqI	TCGA	3 cut(s)	50, 748, 890
TasI	AATT	6 cut(s)	196, 421, 697, 883, 892, 926
TfiI	GAWTC	3 cut(s)	384, 449, 455
Tru1I	TTAA	3 cut(s)	201, 701, 924
Tru9I	TTAA	3 cut(s)	201, 701, 924
TscAI	CASTG	4 cut(s)	18, 163, 291, 643
TseI	GCWGC	2 cut(s)	437, 647
TspDTI	ATGAA	4 cut(s)	429, 563, 741, 903
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	4 cut(s)	18, 163, 291, 643
XagI	CCTNNNNNAGG	3 cut(s)	747, 793, 797
XapI	RAATTY	2 cut(s)	697, 892
XmnI	GAANNNNTTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.