Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004282

Physical Location & Seq

Genomic Coordinates Forward (+)

21881526 .. 21887163

Gene Structure 5638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G210500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTCCACCACTGTTGGGTGGTGAGGAGGAAGGACAGAGCAATGGATCTATGGTAGCTTCTTCACGCTCTATGGACTGTATCTCCCATAATGGGTCTGGACTGAAAGAACGCAACTACCTTGGGTTGTCAGATTGTTCTTCGGTTGACAGCTCCACAGTTTCGAGCTTGTCAGAAGAGAAGAAGAACAAGCTTAATTTTCAGGCCACAGAGTTGAGGCTTGGTCTTCCTGGATCCCAAACACCAGAACGGGAACCAGATCTTTGCTTGTTGAGCTCAGGAAAACTTGACGAGAAGCCACTGTTTCCTTTGCTTCCGTCAAAAGATGGAATCTGCTCCTCATCACAGAAGAATGTTGTTTCAGGCAACAAAAGGGGCTTTGCTGACACCATGGATGGATACTCGGAGGTGAAAAGTTCTGTTTATACTGAAGGAAATTGGATGTTTCATGCAGCTGGTTCTGATTCTGAATCTCCAGAATCTGTTGGACAAGGGAAGTTTCCTGTGAATTCAATCAATGTGATGCTATCATCCAGGCCTTCTGGGACTCAGCCAACCATGACAAAAGAGGAGCTCACTAAAGTTTTACAAGAACAGTCTCATGCTACGAATGGAGCCACCCGTAACCCTTTGGGTGCTTCTAACAACAGCAGTGCCCCAGCTGCTAAGGCACAAGTTGTTGGGTGGCCTCCAATTAGATCATTTAGGAAAAATTCTTTGGCCACCACCTCAAAGAACAATGACGAGGTTAATGGAAAACCTGGTCCTGGTGGTCTTTTTGTCAAGGTCAGCATGGATGGTGCTCCCTACTTGAGGAAGGTAGATCTGAGAACCTACTCTACATATCAAGAGCTGTCTTCTGCTCTCGAAAAGATGTTCAGCTGTTTTACCATAGGGCAGTATGGATCCCATGGAGCTCCGGGAAGGGAAAGGCTGAGTGAGAGTAAGCTGAGAGATCTTCTTCATGGATCAGAATATGTGCTTACGTATGAGGATAAGGATGGTGACTGGATGCTTGTTGGGGATGTCCCCTGGGAGATGTTTATTGATTCATGCAAGAGGTTGAAGATAATGAAGGGCTCCGATGCCATTGGCTTAGCTCCTAGGGCCATGGAGAAATCCAAAAACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

379

Amino Acids

40.87

Weight (kDa)

6.56

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65670 AT5G65670
fragaria_vesca	FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900
malus_domestica	MD01G1045800.v1.1
prunus_persica	Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1
pyrus_communis	pycom01g07180
rosa_chinensis	RchiOBHm_Chr2g0109881
rosa_multiflora	Rmu_sc0005173.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133900
rosa_rugosa	Rorug02G0163400 Rorug02G0163500 Rorug02G0163600.1 Rorug02G0163700
rosa_samantha	Rh2AG215500 Rh2BG225600 Rh2CG217500 Rh2DG221100
rosa_wichuraiana	Rw2G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	55, 228, 241, 900, 913, 976
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	2 cut(s)	508, 712
AcuI	CTGAAG	1 cut(s)	450
AfiI	CCNNNNNNNGG	5 cut(s)	17, 93, 767, 813, 1128
AgsI	TTSAA	2 cut(s)	513, 1066
AjnI	CCWGG	5 cut(s)	229, 533, 760, 766, 1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
Alw21I	GWGCWC	4 cut(s)	278, 576, 805, 919
Alw26I	GTCTC	2 cut(s)	9, 603
AlwI	GGATC	6 cut(s)	55, 228, 241, 900, 913, 976
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	5 cut(s)	204, 536, 686, 720, 1107
ApeKI	GCWGC	2 cut(s)	452, 662
ApoI	RAATTY	2 cut(s)	508, 712
AspA2I	CCTAGG	1 cut(s)	1103
AspS9I	GGNCC	2 cut(s)	764, 1107
AsuC2I	CCSGG	1 cut(s)	921
AsuHPI	GGTGA	3 cut(s)	35, 421, 1016
AvaII	GGWCC	1 cut(s)	764
AvrII	CCTAGG	1 cut(s)	1103
BaeGI	GKGCMC	1 cut(s)	658
BalI	TGGCCA	1 cut(s)	722
BamHI	GGATCC	2 cut(s)	233, 905
BanII	GRGCYC	4 cut(s)	278, 576, 919, 1082
BbsI	GAAGAC	2 cut(s)	218, 849
Bbv12I	GWGCWC	4 cut(s)	278, 576, 805, 919
BbvI	GCAGC	2 cut(s)	464, 649
BccI	CCATC	4 cut(s)	320, 389, 791, 995
BciT130I	CCWGG	5 cut(s)	231, 535, 762, 768, 1033
BciVI	GTATCC	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	921
BcoDI	GTCTC	2 cut(s)	9, 603
BfaI	CTAG	2 cut(s)	1104, 1135
BfuI	GTATCC	1 cut(s)	392
BglII	AGATCT	3 cut(s)	259, 823, 955
BisI	GCNGC	2 cut(s)	453, 663
BlnI	CCTAGG	1 cut(s)	1103
BlpI	GCTNAGC	1 cut(s)	1096
BlsI	GCNGC	2 cut(s)	454, 664
Bme1390I	CCNGG	6 cut(s)	231, 535, 762, 768, 921, 1033
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	2 cut(s)	764, 1107
BmiI	GGNNCC	5 cut(s)	235, 255, 616, 907, 1081
BmrFI	CCNGG	6 cut(s)	231, 535, 762, 768, 921, 1033
BmsI	GCATC	3 cut(s)	513, 1002, 1075
BpiI	GAAGAC	2 cut(s)	218, 849
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	2 cut(s)	277, 666
Bpu1102I	GCTNAGC	1 cut(s)	1096
BpuEI	CTTGAG	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	921
BsaAI	YACGTR	1 cut(s)	987
BsaJI	CCNNGG	7 cut(s)	121, 390, 910, 1031, 1032, 1103, 1110
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 93, 767, 813, 1128
Bse1I	ACTGG	1 cut(s)	1013
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	5 cut(s)	231, 535, 762, 768, 1033
BseDI	CCNNGG	7 cut(s)	121, 390, 910, 1031, 1032, 1103, 1110
BseGI	GGATG	7 cut(s)	400, 447, 530, 802, 1006, 1017, 1030
BseLI	CCNNNNNNNGG	5 cut(s)	17, 93, 767, 813, 1128
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	5 cut(s)	291, 563, 818, 926, 941
BseNI	ACTGG	1 cut(s)	1013
BseRI	GAGGAG	3 cut(s)	41, 328, 584
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	2 cut(s)	464, 649
BseYI	CCCAGC	1 cut(s)	658
BshFI	GGCC	5 cut(s)	206, 538, 688, 722, 1109
BsiHKAI	GWGCWC	4 cut(s)	278, 576, 805, 919
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	2 cut(s)	559, 1013
BslI	CCNNNNNNNGG	5 cut(s)	17, 93, 767, 813, 1128
BsmAI	GTCTC	2 cut(s)	9, 603
BsmFI	GGGAC	2 cut(s)	559, 1013
BsnI	GGCC	5 cut(s)	206, 538, 688, 722, 1109
Bsp1286I	GDGCHC	6 cut(s)	278, 576, 658, 805, 919, 1082
Bsp143I	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
Bsp1720I	GCTNAGC	1 cut(s)	1096
Bsp19I	CCATGG	3 cut(s)	390, 910, 1110
BspANI	GGCC	5 cut(s)	206, 538, 688, 722, 1109
BspCNI	CTCAG	5 cut(s)	290, 562, 819, 927, 942
BspLI	GGNNCC	5 cut(s)	235, 255, 616, 907, 1081
BspPI	GGATC	6 cut(s)	55, 228, 241, 900, 913, 976
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	1013
BssECI	CCNNGG	7 cut(s)	121, 390, 910, 1031, 1032, 1103, 1110
BssMI	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
BssT1I	CCWWGG	5 cut(s)	121, 390, 910, 1103, 1110
Bst2UI	CCWGG	5 cut(s)	231, 535, 762, 768, 1033
Bst4CI	ACNGT	5 cut(s)	15, 80, 160, 303, 597
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	987
BstDEI	CTNAG	7 cut(s)	277, 549, 666, 827, 935, 950, 1096
BstDSI	CCRYGG	3 cut(s)	390, 910, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	811
BstF5I	GGATG	7 cut(s)	400, 447, 530, 802, 1006, 1017, 1030
BstKTI	GATC	8 cut(s)	50, 236, 262, 701, 826, 908, 958, 971
BstMAI	GTCTC	2 cut(s)	9, 603
BstMBI	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 662, 668, 1106
BstNI	CCWGG	5 cut(s)	231, 535, 762, 768, 1033
BstSCI	CCNGG	6 cut(s)	229, 533, 760, 766, 919, 1031
BstSLI	GKGCMC	1 cut(s)	658
BstSNI	TACGTA	1 cut(s)	987
BstV1I	GCAGC	2 cut(s)	464, 649
BstV2I	GAAGAC	2 cut(s)	218, 849
BstX2I	RGATCY	6 cut(s)	47, 233, 259, 823, 905, 955
BstYI	RGATCY	6 cut(s)	47, 233, 259, 823, 905, 955
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	5 cut(s)	206, 538, 688, 722, 1109
BtgI	CCRYGG	3 cut(s)	390, 910, 1110
BtsCI	GGATG	7 cut(s)	400, 447, 530, 802, 1006, 1017, 1030
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	3 cut(s)	11, 299, 658
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	764, 1107
CsiI	ACCWGGT	1 cut(s)	760
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	9 cut(s)	391, 449, 559, 602, 793, 911, 965, 1053, 1111
DdeI	CTNAG	7 cut(s)	277, 549, 666, 827, 935, 950, 1096
DpnI	GATC	8 cut(s)	49, 235, 261, 700, 825, 907, 957, 970
DpnII	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	3 cut(s)	276, 574, 917
Eco105I	TACGTA	1 cut(s)	987
Eco130I	CCWWGG	5 cut(s)	121, 390, 910, 1103, 1110
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	4 cut(s)	278, 576, 919, 1082
Eco47I	GGWCC	1 cut(s)	764
Eco53kI	GAGCTC	3 cut(s)	276, 574, 917
Eco57I	CTGAAG	1 cut(s)	450
EcoICRI	GAGCTC	3 cut(s)	276, 574, 917
EcoNI	CCTNNNNNAGG	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	5 cut(s)	229, 533, 760, 766, 1031
EcoT14I	CCWWGG	5 cut(s)	121, 390, 910, 1103, 1110
EcoT38I	GRGCYC	4 cut(s)	278, 576, 919, 1082
ErhI	CCWWGG	5 cut(s)	121, 390, 910, 1103, 1110
FaeI	CATG	9 cut(s)	394, 452, 562, 605, 796, 914, 968, 1056, 1114
FaqI	GGGAC	2 cut(s)	559, 1013
FatI	CATG	9 cut(s)	390, 448, 558, 601, 792, 910, 964, 1052, 1110
Fnu4HI	GCNGC	2 cut(s)	453, 663
FokI	GGATG	7 cut(s)	407, 454, 517, 809, 1013, 1024, 1037
FriOI	GRGCYC	4 cut(s)	278, 576, 919, 1082
Fsp4HI	GCNGC	2 cut(s)	453, 663
FspBI	CTAG	2 cut(s)	1104, 1135
GluI	GCNGC	2 cut(s)	453, 663
GsaI	CCCAGC	1 cut(s)	662
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	5 cut(s)	206, 538, 688, 722, 1109
HapII	CCGG	1 cut(s)	920
Hin1II	CATG	9 cut(s)	394, 452, 562, 605, 796, 914, 968, 1056, 1114
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	6 cut(s)	330, 464, 470, 479, 547, 1049
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	3 cut(s)	35, 421, 1016
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	8 cut(s)	133, 175, 406, 463, 469, 828, 973, 1084
Hpy188III	TCNNGA	5 cut(s)	99, 279, 476, 848, 866
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	6 cut(s)	26, 425, 549, 811, 918, 1069
HpyCH4III	ACNGT	5 cut(s)	15, 80, 160, 303, 597
HpyCH4IV	ACGT	1 cut(s)	986
HpyCH4V	TGCA	2 cut(s)	452, 1056
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 662, 668, 1106
HpyF3I	CTNAG	7 cut(s)	277, 549, 666, 827, 935, 950, 1096
HpySE526I	ACGT	1 cut(s)	986
Hsp92II	CATG	9 cut(s)	394, 452, 562, 605, 796, 914, 968, 1056, 1114
Kzo9I	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
LmnI	GCTCC	9 cut(s)	158, 341, 571, 614, 808, 914, 922, 1085, 1105
Lsp1109I	GCAGC	2 cut(s)	464, 649
LweI	GCATC	3 cut(s)	513, 1002, 1075
MabI	ACCWGGT	1 cut(s)	760
MaeI	CTAG	2 cut(s)	1104, 1135
MaeII	ACGT	1 cut(s)	986
MaeIII	GTNAC	2 cut(s)	623, 1004
MalI	GATC	8 cut(s)	49, 235, 261, 700, 825, 907, 957, 970
MboI	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
MflI	RGATCY	6 cut(s)	47, 233, 259, 823, 905, 955
MhlI	GDGCHC	6 cut(s)	278, 576, 658, 805, 919, 1082
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	5 cut(s)	196, 436, 508, 693, 712
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	466
Mox20I	TGGCCA	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	2 cut(s)	195, 750
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	3 cut(s)	455, 662, 882
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	6 cut(s)	231, 535, 762, 768, 921, 1033
MvaI	CCWGG	5 cut(s)	231, 535, 762, 768, 1033
MwoI	GCNNNNNNNGC	4 cut(s)	273, 662, 668, 1106
NciI	CCSGG	1 cut(s)	921
NcoI	CCATGG	3 cut(s)	390, 910, 1110
NdeII	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
NlaIII	CATG	9 cut(s)	394, 452, 562, 605, 796, 914, 968, 1056, 1114
NlaIV	GGNNCC	5 cut(s)	235, 255, 616, 907, 1081
NmuCI	GTSAC	1 cut(s)	1004
PasI	CCCWGGG	1 cut(s)	1032
PceI	AGGCCT	1 cut(s)	538
PfeI	GAWTC	5 cut(s)	330, 464, 470, 479, 1049
PfoI	TCCNGGA	2 cut(s)	229, 919
PkrI	GCNGC	2 cut(s)	454, 664
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Ppu21I	YACGTR	1 cut(s)	987
Psp124BI	GAGCTC	3 cut(s)	278, 576, 919
Psp6I	CCWGG	5 cut(s)	229, 533, 760, 766, 1031
PspFI	CCCAGC	1 cut(s)	658
PspGI	CCWGG	5 cut(s)	229, 533, 760, 766, 1031
PspN4I	GGNNCC	5 cut(s)	235, 255, 616, 907, 1081
PspPI	GGNCC	2 cut(s)	764, 1107
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	6 cut(s)	47, 233, 259, 823, 905, 955
PvuII	CAGCTG	3 cut(s)	455, 662, 882
SacI	GAGCTC	3 cut(s)	278, 576, 919
SaqAI	TTAA	2 cut(s)	195, 750
SatI	GCNGC	2 cut(s)	453, 663
Sau3AI	GATC	8 cut(s)	47, 233, 259, 698, 823, 905, 955, 968
Sau96I	GGNCC	2 cut(s)	764, 1107
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	6 cut(s)	231, 535, 762, 768, 921, 1033
SduI	GDGCHC	6 cut(s)	278, 576, 658, 805, 919, 1082
SexAI	ACCWGGT	1 cut(s)	760
SfaNI	GCATC	3 cut(s)	513, 1002, 1075
SinI	GGWCC	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	811
SmoI	CTYRAG	1 cut(s)	811
SnaBI	TACGTA	1 cut(s)	987
Sse9I	AATT	5 cut(s)	196, 436, 508, 693, 712
SseBI	AGGCCT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	1104, 1135
SstI	GAGCTC	3 cut(s)	278, 576, 919
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	6 cut(s)	229, 533, 760, 766, 919, 1031
StyI	CCWWGG	5 cut(s)	121, 390, 910, 1103, 1110
TaaI	ACNGT	5 cut(s)	15, 80, 160, 303, 597
TaiI	ACGT	1 cut(s)	989
TaqI	TCGA	2 cut(s)	164, 867
TasI	AATT	5 cut(s)	196, 436, 508, 693, 712
TfiI	GAWTC	5 cut(s)	330, 464, 470, 479, 1049
Tru1I	TTAA	2 cut(s)	195, 750
Tru9I	TTAA	2 cut(s)	195, 750
TscAI	CASTG	3 cut(s)	18, 306, 658
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	2 cut(s)	452, 662
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	4 cut(s)	437, 953, 1041, 1088
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	3 cut(s)	18, 306, 658
VpaK11BI	GGWCC	1 cut(s)	764
XagI	CCTNNNNNAGG	1 cut(s)	811
XapI	RAATTY	2 cut(s)	508, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmaJI	CCTAGG	1 cut(s)	1103
XspI	CTAG	2 cut(s)	1104, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.