Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004282

Physical Location & Seq

Genomic Coordinates Reverse (-)

14584953 .. 14587679

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0163500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCTGAAGCAATTATATCATCTGCAGAAGAACTGCAGGCAGTGAATGCCTACGGATGGGCTGCTAGAGATTCCTCGGGAATTCTCTCTCCCTTCCACTTCACCAGGAGGACTACTGGTAGGAATGATATCAGCATGAAGATACTTTACTGTGGCATTTGCCACACAGACATTCACCTTGCTAAGGACGAAGTTGCAATGACCATCTATCCCCTTGTCCCAGGACATGAGTTTGTCGGGGAAGTGACCGAAGTCGGGAGCAACGTCACCAAATTTAAAGTTGGAGACATAGCCGGAGTGGGGTGCATGGTGGGTTCATGTGGTTCGTGCGGTAACTGCACACGAGACTTGGAAAATTACTGTCCCAAAATGGTATGGACCTACAACAAACACTACCATGACGGATCGATAACTTTCGGTGGATACTCCGACAAATTTGTAGTCGAGGAGCATTTCGCAGTACGAATCCCAGATAACTTGCCATTGGAGGGTGTTGCACCTATGCTTTGTGCTGGCATTTCGGTGTACAGCCCTATGAGACACTTTGGACTACTTGAGCATGGTAAGCACTTGGGTGTGGTAGGGCTTGGGGGCCTCGGTCATATGGCAGTGAAGTTTGCCAAGGCTATCGGAGTAAAAGTGACTGTGATCAGTACATCTCCAAACAAGAAGAAGGAAGCAATGGAACAACTTGGTGTTGACCATTTTCTGATCAGTCGCAACCAAGAGGAAATGCAGGCTGCCATGGGTACATTGGACGGTATCATCGATACGGTTTCAGCTCCTCATTCTCTCACGCCATTGGTTGACTTATTAATGACGGATGGAAAGCTAATCGTGGTGGCGGGTTCTCCGTTCCAACCACCTGAGCTACCGGTGTTTCCCTTGATACTTGGGAGAAAGTCTATTGCCGGGAGTGCAACTGGGGGAATGAAAGAGACTCAAGAGATGATAGATTTTGCAGCAAAGCATAATATCACAGCTGATGTTGAAGTCATTCCTATGGATTATGTGAACACTGCTTTTGAACGACTTGCCAAGGTAGATGTTAAGTACCGATTTGTCATTGACGTCGCAAACACCCTGAATTCTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

366

Amino Acids

39.64

Weight (kDa)

5.86

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	41 - 158	1.6e-23	Alcohol dehydrogenase GroES-like domain
AlaDh_PNT_C	PF01262	192 - 268	7.2e-06	Alanine dehydrogenase/PNT, C-terminal domain
ADH_zinc_N	PF00107	198 - 322	1.5e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65670 AT5G65670
fragaria_vesca	FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900 FvH4_1g18900
malus_domestica	MD01G1045800.v1.1
prunus_persica	Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1 Prupe.6G210500_v2.0.a1
pyrus_communis	pycom01g07180
rosa_chinensis	RchiOBHm_Chr2g0109881
rosa_multiflora	Rmu_sc0005173.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133900
rosa_rugosa	Rorug02G0163400 Rorug02G0163500 Rorug02G0163600.1 Rorug02G0163700
rosa_samantha	Rh2AG215500 Rh2BG225600 Rh2CG217500 Rh2DG221100
rosa_wichuraiana	Rw2G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1074
AciI	CCGC	2 cut(s)	330, 845
AclWI	GGATC	1 cut(s)	412
AcsI	RAATTY	4 cut(s)	81, 272, 434, 1087
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	1071
AfaI	GTAC	5 cut(s)	462, 527, 655, 751, 1055
AfiI	CCNNNNNNNGG	5 cut(s)	57, 184, 255, 300, 488
AgeI	ACCGGT	1 cut(s)	874
AgsI	TTSAA	2 cut(s)	992, 1028
AjnI	CCWGG	2 cut(s)	104, 220
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	4 cut(s)	782, 832, 871, 983
AluI	AGCT	4 cut(s)	782, 832, 871, 983
Alw26I	GTCTC	4 cut(s)	279, 339, 532, 932
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	3 cut(s)	62, 740, 962
ApoI	RAATTY	4 cut(s)	81, 272, 434, 1087
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AseI	ATTAAT	1 cut(s)	815
AsiGI	ACCGGT	1 cut(s)	874
Asp700I	GAANNNNTTC	1 cut(s)	996
AspS9I	GGNCC	2 cut(s)	378, 592
AsuC2I	CCSGG	1 cut(s)	913
AsuHPI	GGTGA	3 cut(s)	94, 167, 259
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	131, 163
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	49, 727, 974
BccI	CCATC	3 cut(s)	51, 212, 818
BciT130I	CCWGG	2 cut(s)	106, 222
BciVI	GTATCC	1 cut(s)	416
BclI	TGATCA	2 cut(s)	648, 711
BcnI	CCSGG	1 cut(s)	913
BcoDI	GTCTC	4 cut(s)	279, 339, 532, 932
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	24, 35
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	3 cut(s)	63, 741, 963
BlsI	GCNGC	3 cut(s)	64, 742, 964
Bme1390I	CCNGG	3 cut(s)	106, 222, 913
Bme18I	GGWCC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	378, 592
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	3 cut(s)	106, 222, 913
BmrI	ACTGGG	1 cut(s)	933
BmuI	ACTGGG	1 cut(s)	933
BoxI	GACNNNNGTC	1 cut(s)	251
Bpu10I	CCTNAGC	2 cut(s)	183, 867
BpuEI	CTTGAG	2 cut(s)	575, 927
BpuMI	CCSGG	1 cut(s)	913
Bsa29I	ATCGAT	2 cut(s)	407, 768
BsaHI	GRCGYC	1 cut(s)	1071
BsaJI	CCNNGG	6 cut(s)	75, 220, 595, 621, 744, 1038
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 184, 255, 300, 488
Bse118I	RCCGGY	1 cut(s)	874
Bse1I	ACTGG	2 cut(s)	121, 928
Bse3DI	GCAATG	2 cut(s)	204, 687
BseBI	CCWGG	2 cut(s)	106, 222
BseCI	ATCGAT	2 cut(s)	407, 768
BseDI	CCNNGG	6 cut(s)	75, 220, 595, 621, 744, 1038
BseGI	GGATG	2 cut(s)	62, 829
BseLI	CCNNNNNNNGG	5 cut(s)	57, 184, 255, 300, 488
BseMI	GCAATG	2 cut(s)	204, 687
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	2 cut(s)	121, 928
BseRI	GAGGAG	2 cut(s)	461, 774
BseXI	GCAGC	3 cut(s)	49, 727, 974
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	594
BshTI	ACCGGT	1 cut(s)	874
BshVI	ATCGAT	2 cut(s)	407, 768
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	294, 875, 912
BslFI	GGGAC	2 cut(s)	203, 348
BslI	CCNNNNNNNGG	5 cut(s)	57, 184, 255, 300, 488
BsmAI	GTCTC	4 cut(s)	279, 339, 532, 932
BsmFI	GGGAC	2 cut(s)	203, 348
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	594
BsoBI	CYCGRG	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	404, 648, 711
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	2 cut(s)	330, 845
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	1 cut(s)	859
BspDI	ATCGAT	2 cut(s)	407, 768
BspLI	GGNNCC	1 cut(s)	593
BspMAI	CTGCAG	2 cut(s)	28, 39
BspPI	GGATC	1 cut(s)	412
BsrDI	GCAATG	2 cut(s)	204, 687
BsrFI	RCCGGY	1 cut(s)	874
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	2 cut(s)	121, 928
BssAI	RCCGGY	1 cut(s)	874
BssECI	CCNNGG	6 cut(s)	75, 220, 595, 621, 744, 1038
BssMI	GATC	3 cut(s)	404, 648, 711
BssNI	GRCGYC	1 cut(s)	1071
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	3 cut(s)	621, 744, 1038
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	106, 222
Bst4CI	ACNGT	5 cut(s)	152, 362, 646, 761, 775
BstACI	GRCGYC	1 cut(s)	1071
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	39, 514, 738
BstDEI	CTNAG	2 cut(s)	183, 867
BstDSI	CCRYGG	1 cut(s)	744
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	62, 829
BstKTI	GATC	3 cut(s)	407, 651, 714
BstMAI	GTCTC	4 cut(s)	279, 339, 532, 932
BstMBI	GATC	3 cut(s)	404, 648, 711
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 336, 565, 917
BstNI	CCWGG	2 cut(s)	106, 222
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	104, 220, 911
BstSFI	CTRYAG	2 cut(s)	24, 35
BstV1I	GCAGC	3 cut(s)	49, 727, 974
Bsu15I	ATCGAT	2 cut(s)	407, 768
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	594
BsuTUI	ATCGAT	2 cut(s)	407, 768
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	62, 829
BtsI	GCAGTG	3 cut(s)	48, 615, 1017
BtsIMutI	CAGTG	3 cut(s)	48, 615, 1017
Cac8I	GCNNGC	3 cut(s)	39, 514, 738
Cfr10I	RCCGGY	1 cut(s)	874
Cfr13I	GGNCC	2 cut(s)	378, 592
ClaI	ATCGAT	2 cut(s)	407, 768
Csp6I	GTAC	5 cut(s)	461, 526, 654, 750, 1054
CspAI	ACCGGT	1 cut(s)	874
CviAII	CATG	7 cut(s)	136, 227, 307, 318, 398, 560, 745
CviQI	GTAC	5 cut(s)	461, 526, 654, 750, 1054
DdeI	CTNAG	2 cut(s)	183, 867
DpnI	GATC	3 cut(s)	406, 650, 713
DpnII	GATC	3 cut(s)	404, 648, 711
DraI	TTTAAA	1 cut(s)	277
Eco130I	CCWWGG	3 cut(s)	621, 744, 1038
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRI	GAATTC	2 cut(s)	81, 1087
EcoRII	CCWGG	2 cut(s)	104, 220
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	621, 744, 1038
ErhI	CCWWGG	3 cut(s)	621, 744, 1038
FaeI	CATG	7 cut(s)	139, 230, 310, 321, 401, 563, 748
FaqI	GGGAC	2 cut(s)	203, 348
FatI	CATG	7 cut(s)	135, 226, 306, 317, 397, 559, 744
FauI	CCCGC	1 cut(s)	838
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	2 cut(s)	648, 711
Fnu4HI	GCNGC	3 cut(s)	63, 741, 963
FokI	GGATG	2 cut(s)	69, 836
Fsp4HI	GCNGC	3 cut(s)	63, 741, 963
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	3 cut(s)	63, 741, 963
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	3 cut(s)	294, 875, 912
Hin1I	GRCGYC	1 cut(s)	1071
Hin1II	CATG	7 cut(s)	139, 230, 310, 321, 401, 563, 748
HincII	GTYRAC	2 cut(s)	700, 808
HindII	GTYRAC	2 cut(s)	700, 808
HinfI	GANTC	3 cut(s)	71, 465, 940
HpaII	CCGG	3 cut(s)	294, 875, 912
HphI	GGTGA	3 cut(s)	94, 167, 259
Hpy166II	GTNNAC	4 cut(s)	526, 700, 808, 1015
Hpy188I	TCNGA	4 cut(s)	7, 430, 632, 711
Hpy188III	TCNNGA	3 cut(s)	78, 256, 944
Hpy8I	GTNNAC	4 cut(s)	526, 700, 808, 1015
Hpy99I	CGWCG	1 cut(s)	1076
HpyAV	CCTTC	2 cut(s)	103, 667
HpyCH4III	ACNGT	5 cut(s)	152, 362, 646, 761, 775
HpyCH4IV	ACGT	2 cut(s)	264, 1071
HpyCH4V	TGCA	9 cut(s)	26, 37, 197, 306, 339, 497, 736, 920, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 336, 565, 917
HpyF3I	CTNAG	2 cut(s)	183, 867
HpySE526I	ACGT	2 cut(s)	264, 1071
Hsp92I	GRCGYC	1 cut(s)	1071
Hsp92II	CATG	7 cut(s)	139, 230, 310, 321, 401, 563, 748
Ksp22I	TGATCA	2 cut(s)	648, 711
Kzo9I	GATC	3 cut(s)	404, 648, 711
LmnI	GCTCC	3 cut(s)	258, 448, 787
Lsp1109I	GCAGC	3 cut(s)	49, 727, 974
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	264, 1071
MaeIII	GTNAC	4 cut(s)	244, 265, 332, 640
MalI	GATC	3 cut(s)	406, 650, 713
MboI	GATC	3 cut(s)	404, 648, 711
MboII	GAAGA	3 cut(s)	41, 151, 682
MluCI	AATT	6 cut(s)	12, 81, 272, 355, 434, 1087
MlyI	GAGTC	1 cut(s)	934
MmeI	TCCRAC	3 cut(s)	262, 453, 883
MnlI	CCTC	7 cut(s)	85, 102, 439, 481, 605, 721, 795
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	3 cut(s)	276, 815, 1050
MslI	CAYNNNNRTG	4 cut(s)	396, 521, 573, 1001
MspA1I	CMGCKG	1 cut(s)	983
MspI	CCGG	3 cut(s)	294, 875, 912
MspR9I	CCNGG	3 cut(s)	106, 222, 913
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	106, 222
MwoI	GCNNNNNNNGC	4 cut(s)	47, 336, 565, 917
NciI	CCSGG	1 cut(s)	913
NcoI	CCATGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	3 cut(s)	404, 648, 711
NlaIII	CATG	7 cut(s)	139, 230, 310, 321, 401, 563, 748
NlaIV	GGNNCC	1 cut(s)	593
NmuCI	GTSAC	3 cut(s)	244, 265, 640
OliI	CACNNNNGTG	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 765
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	2 cut(s)	71, 465
PinAI	ACCGGT	1 cut(s)	874
PkrI	GCNGC	3 cut(s)	64, 742, 964
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PshAI	GACNNNNGTC	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	815
Psp6I	CCWGG	2 cut(s)	104, 220
PspGI	CCWGG	2 cut(s)	104, 220
PspN4I	GGNNCC	1 cut(s)	593
PspPI	GGNCC	2 cut(s)	378, 592
PstI	CTGCAG	2 cut(s)	28, 39
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	5 cut(s)	462, 527, 655, 751, 1055
RsaNI	GTAC	5 cut(s)	461, 526, 654, 750, 1054
RseI	CAYNNNNRTG	4 cut(s)	396, 521, 573, 1001
SaqAI	TTAA	3 cut(s)	276, 815, 1050
SatI	GCNGC	3 cut(s)	63, 741, 963
Sau3AI	GATC	3 cut(s)	404, 648, 711
Sau96I	GGNCC	2 cut(s)	378, 592
SchI	GAGTC	1 cut(s)	934
ScrFI	CCNGG	3 cut(s)	106, 222, 913
SfcI	CTRYAG	2 cut(s)	24, 35
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	4 cut(s)	396, 521, 573, 1001
SmlI	CTYRAG	2 cut(s)	554, 942
SmoI	CTYRAG	2 cut(s)	554, 942
Sse9I	AATT	6 cut(s)	12, 81, 272, 355, 434, 1087
SsiI	CCGC	2 cut(s)	330, 845
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	104, 220, 911
StyI	CCWWGG	3 cut(s)	621, 744, 1038
TaaI	ACNGT	5 cut(s)	152, 362, 646, 761, 775
TaiI	ACGT	2 cut(s)	267, 1074
TaqI	TCGA	3 cut(s)	407, 444, 768
TaqII	GACCGA	2 cut(s)	263, 587
TasI	AATT	6 cut(s)	12, 81, 272, 355, 434, 1087
TatI	WGTACW	2 cut(s)	525, 653
TfiI	GAWTC	2 cut(s)	71, 465
Tru1I	TTAA	3 cut(s)	276, 815, 1050
Tru9I	TTAA	3 cut(s)	276, 815, 1050
TscAI	CASTG	3 cut(s)	48, 615, 1024
TseFI	GTSAC	3 cut(s)	244, 265, 640
TseI	GCWGC	3 cut(s)	62, 740, 962
Tsp45I	GTSAC	3 cut(s)	244, 265, 640
TspDTI	ATGAA	3 cut(s)	152, 306, 947
TspGWI	ACGGA	4 cut(s)	69, 417, 836, 843
TspRI	CASTG	3 cut(s)	48, 615, 1024
VpaK11BI	GGWCC	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	815
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	4 cut(s)	81, 272, 434, 1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	751
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.