Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

26347593 .. 26349056

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCGTTTCTTTTATTGCTTTTCAATTTGTAATGCGAGTTTTGCTTTATTTTGTCCAGCCATGGAAGAAGCAGATCAGTTATGTTTAGCTGCTAAATCCGGCGACTTGAAAAAGGTTCAAACTTTAATTTACTCCGGCGCCGACGTTACTCACTTTGATAACGACGGTTTAACGCCGTTAATGCACGCCGCTAAAATCGGAAACGCAGAGATAGTAACGGCGTTACTCGAATCCGGAGCTCCATGGAACGCATTATCTCCATCAAATCTCTCAGCAGGAGATTTCGCCATGGAAGCAGGACATCAAGAAACTTTCGATCTTCTTCTCAAAACCGGGATCCAATCAGAGCTAATCTTAGGAACAATCGCAAGAAACCAAACAAAGAACGAATATTCTAATCAAGAATATCTTCAAGACAGAGTTAGTTTCAGTGAAGACAAGTTAATGGATAGTGAAAGCAAAGGTGTGATGATGGCTTGGGAAAAACCATTAATGGAAGCTCACGCTAAAGCTATTTGTCTCAACGGTGGTCACATTCTTAACGTTGGTTTCGGTATGGGACTTGTCGATACAGCGATTCAACGATACAATCCGGTTAAACACACGATCATTGAAGCTCATCCTGAAGTTTATAAGCGTATGATTGAATCTGGTTGGGGAGAGAAAGAGAATGTGAAGATTGTTTTTGGAAGATGGCAAGATGTTCTTGATAAGCTTGATGATAATTCTTTTGATGGGATCTTTTTTGATACTTATGGTGAGTATTATGAAGATTTAAGAGAGTTTCATCAGCATCTTCCGAGGCTGTTGAAGCCTGATGGTGTTTATTCGTATTTCAATGGGTTTTGTGGAAGCAACGCGTTTTTTCATGTTGTGTATTGCAATTTGGTGACTTTGGAGATTGAGAATTTAGGGTTTAGCACTCAGTTGATTCCATTGCCGGTTAAGGATTGTCTTGGGGATGAAGTTTGGGAAGGTGTCAAGCAAAAGTATTGGCAGCTTGATACTTATTATCTCCCTGTTTGTCAGTTTAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

346

Amino Acids

39.07

Weight (kDa)

4.8

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	7 - 94	6.6e-13	Ankyrin repeats (3 copies)
Ank_4	PF13637	7 - 56	2.2e-09	Ankyrin repeats (many copies)
Ank	PF00023	35 - 64	5.3e-06	Ankyrin repeat
Methyltransf_11	PF08241	160 - 256	7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	1 cut(s)	860
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	1 cut(s)	189
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	3 cut(s)	331, 344, 746
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	9 cut(s)	24, 109, 119, 413, 581, 614, 647, 811, 838
AluBI	AGCT	8 cut(s)	89, 239, 349, 500, 512, 617, 715, 1000
AluI	AGCT	8 cut(s)	89, 239, 349, 500, 512, 617, 715, 1000
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	3 cut(s)	331, 344, 746
Aor13HI	TCCGGA	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	89, 997
ApoI	RAATTY	1 cut(s)	907
AseI	ATTAAT	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	770, 901
BamHI	GGATCC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	76, 1009
BccI	CCATC	5 cut(s)	268, 466, 687, 728, 812
BceAI	ACGGC	2 cut(s)	160, 234
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	3 cut(s)	90, 189, 998
BlsI	GCNGC	3 cut(s)	91, 190, 999
Bme1390I	CCNGG	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	139, 338
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	60, 242, 288, 800
BsaWI	WCCGGW	2 cut(s)	233, 592
Bse118I	RCCGGY	1 cut(s)	940
Bse3DI	GCAATG	1 cut(s)	935
BseAI	TCCGGA	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	60, 242, 288, 800
BseGI	GGATG	2 cut(s)	619, 967
BseMI	GCAATG	1 cut(s)	935
BseMII	CTCAG	2 cut(s)	285, 938
BseXI	GCAGC	2 cut(s)	76, 1009
Bsh1236I	CGCG	1 cut(s)	860
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	6 cut(s)	99, 135, 234, 333, 593, 941
BslFI	GGGAC	1 cut(s)	573
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	73, 316, 336, 606, 738
Bsp19I	CCATGG	3 cut(s)	60, 242, 288
BspACI	CCGC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	284, 937
BspEI	TCCGGA	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	860
BspLI	GGNNCC	2 cut(s)	139, 338
BspPI	GGATC	3 cut(s)	331, 344, 746
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	935
BsrFI	RCCGGY	1 cut(s)	940
BssAI	RCCGGY	1 cut(s)	940
BssECI	CCNNGG	4 cut(s)	60, 242, 288, 800
BssMI	GATC	5 cut(s)	73, 316, 336, 606, 738
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	60, 242, 288
Bst4CI	ACNGT	2 cut(s)	167, 527
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	271, 355, 924
BstDSI	CCRYGG	3 cut(s)	60, 242, 288
BstF5I	GGATG	2 cut(s)	619, 967
BstFNI	CGCG	1 cut(s)	860
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	76, 319, 339, 609, 741
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	5 cut(s)	73, 316, 336, 606, 738
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 181, 293, 811
BstSCI	CCNGG	1 cut(s)	332
BstUI	CGCG	1 cut(s)	860
BstV1I	GCAGC	2 cut(s)	76, 1009
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	336, 738
BstYI	RGATCY	2 cut(s)	336, 738
BtgI	CCRYGG	3 cut(s)	60, 242, 288
BtsCI	GGATG	2 cut(s)	619, 967
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	940
CviAII	CATG	4 cut(s)	61, 243, 289, 869
DdeI	CTNAG	3 cut(s)	271, 355, 924
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	75, 318, 338, 608, 740
DpnII	GATC	5 cut(s)	73, 316, 336, 606, 738
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	3 cut(s)	60, 242, 288
Eco24I	GRGCYC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	645
EcoICRI	GAGCTC	1 cut(s)	239
EcoT14I	CCWWGG	3 cut(s)	60, 242, 288
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	3 cut(s)	60, 242, 288
FaeI	CATG	4 cut(s)	64, 246, 292, 872
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 690, 722
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	4 cut(s)	60, 242, 288, 868
Fnu4HI	GCNGC	3 cut(s)	90, 189, 998
FokI	GGATG	2 cut(s)	606, 974
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	90, 189, 998
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	3 cut(s)	90, 189, 998
HaeII	RGCGCY	1 cut(s)	141
HapII	CCGG	6 cut(s)	99, 135, 234, 333, 593, 941
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	64, 246, 292, 872
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	4 cut(s)	230, 577, 647, 931
HpaII	CCGG	6 cut(s)	99, 135, 234, 333, 593, 941
HphI	GGTGA	2 cut(s)	770, 901
Hpy188I	TCNGA	3 cut(s)	200, 346, 801
Hpy188III	TCNNGA	6 cut(s)	234, 305, 401, 413, 623, 707
Hpy99I	CGWCG	2 cut(s)	146, 167
HpyAV	CCTTC	1 cut(s)	968
HpyCH4III	ACNGT	2 cut(s)	167, 527
HpyCH4IV	ACGT	2 cut(s)	144, 543
HpyCH4V	TGCA	2 cut(s)	184, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 181, 293, 811
HpyF3I	CTNAG	3 cut(s)	271, 355, 924
HpySE526I	ACGT	2 cut(s)	144, 543
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	64, 246, 292, 872
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	5 cut(s)	73, 316, 336, 606, 738
LmnI	GCTCC	2 cut(s)	236, 244
Lsp1109I	GCAGC	2 cut(s)	76, 1009
LweI	GCATC	1 cut(s)	802
MaeII	ACGT	2 cut(s)	144, 543
MaeIII	GTNAC	6 cut(s)	145, 214, 222, 530, 889, 1034
MalI	GATC	5 cut(s)	75, 318, 338, 608, 740
MboI	GATC	5 cut(s)	73, 316, 336, 606, 738
MboII	GAAGA	9 cut(s)	77, 311, 314, 401, 446, 688, 702, 782, 788
MflI	RGATCY	2 cut(s)	336, 738
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	5 cut(s)	24, 126, 724, 883, 907
MluI	ACGCGT	1 cut(s)	858
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	795
MroI	TCCGGA	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	9 cut(s)	125, 170, 179, 443, 491, 540, 597, 776, 945
MspI	CCGG	6 cut(s)	99, 135, 234, 333, 593, 941
MspR9I	CCNGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	860
MwoI	GCNNNNNNNGC	4 cut(s)	41, 181, 293, 811
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	3 cut(s)	60, 242, 288
NdeII	GATC	5 cut(s)	73, 316, 336, 606, 738
NlaIII	CATG	4 cut(s)	64, 246, 292, 872
NlaIV	GGNNCC	2 cut(s)	139, 338
NmuCI	GTSAC	3 cut(s)	530, 889, 1034
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	4 cut(s)	230, 577, 647, 931
PkrI	GCNGC	3 cut(s)	91, 190, 999
PluTI	GGCGCC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	633
Psp124BI	GAGCTC	1 cut(s)	241
Psp1406I	AACGTT	1 cut(s)	543
PspN4I	GGNNCC	2 cut(s)	139, 338
PsuI	RGATCY	2 cut(s)	336, 738
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	9 cut(s)	125, 170, 179, 443, 491, 540, 597, 776, 945
SatI	GCNGC	3 cut(s)	90, 189, 998
Sau3AI	GATC	5 cut(s)	73, 316, 336, 606, 738
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	802
SfoI	GGCGCC	1 cut(s)	139
Sse9I	AATT	5 cut(s)	24, 126, 724, 883, 907
SsiI	CCGC	1 cut(s)	189
SspDI	GGCGCC	1 cut(s)	137
SspI	AATATT	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	332
StyI	CCWWGG	3 cut(s)	60, 242, 288
TaaI	ACNGT	2 cut(s)	167, 527
TaiI	ACGT	2 cut(s)	147, 546
TaqI	TCGA	3 cut(s)	228, 315, 567
TasI	AATT	5 cut(s)	24, 126, 724, 883, 907
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	230, 577, 647, 931
Tru1I	TTAA	9 cut(s)	125, 170, 179, 443, 491, 540, 597, 776, 945
Tru9I	TTAA	9 cut(s)	125, 170, 179, 443, 491, 540, 597, 776, 945
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	3 cut(s)	530, 889, 1034
TseI	GCWGC	2 cut(s)	89, 997
Tsp45I	GTSAC	3 cut(s)	530, 889, 1034
TspDTI	ATGAA	4 cut(s)	776, 783, 857, 978
TspRI	CASTG	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.