Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

36638237 .. 36639793

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGGAAGGCGAGCAACTATGCGAGGCGGCGAGGAACGGCGAAGCCGAAAAGCTGAAAACTTTAATCGAAACCGGAGCTGACGTTTCGTACTTCGACGGCGACGGCCTTACCCCGCTGATGCACGCGGCCAAGCTGGGCCACGGAGATGCCGTCAAGACTCTTCTAGAAGCTGGCGCGCCATGGAACGCCCTATCTCCTTCCAATCTCTCCGCCGGAGATTTTGCCATGGACGCAGGCCACGAAAATGCCTACGACATCCTCCTCAATGCCGGGATTCAAGCTGAATTGGTACTGGGAACGATTGCGAGGAAAGAGAATAAGAATGGGGATGGCAATGGAGATTACTTGGAAGACAGGGTGAGCTTCAGCGAGGACAAGCTGATGGACTCAGACAGTAAGGCGGTGATGATGGCTTGGGAGAAGCCATTAATGGAGGCACACGCGAAAGCTGTTTGCTCAGGAGGTGGGCATGTACTGAACATTGGATTTGGGATGGGCCTCGTGGACACGGCCATCCAGCAATACTCCCCTGTTTCGCACACCATTGTTGAAGCTCACCCGGAGGTTTACGGGCGCATGGTTCGAACCGGTTGGGCTCAGAAGGACAATGTGAACATAATATTTGGGCGCTGGCAGGATGTGCTACCTCAACTTCAATCTTATGATGGGATTTTCTTTGACACCTATGGAGAGTACTATGAAGACTTGAGAGAGTTCCACCAGCATCTTCCTGTGTTGTTGAAGCCTGGGGGAATCTACTCATTCTTTAATGGCCTTTGTGGAGGTAATGCATTCTTCCATGTTGTGTACTGTCACTTGGTTTCACTAGAGCTTCAGAATTTGGGTTACTCTACACAGTTCATTCCATTGCCTGTTAAGGATTGTTTAGGAGAACAAGTTTGGGAAGGTGTTAAACAAAAGTATTGGCAGCTTGATACTTATTACCTCCCTGTTTGTCAGTCCGTAGACGATTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

328

Amino Acids

36.08

Weight (kDa)

4.68

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	969
AccII	CGCG	3 cut(s)	128, 179, 446
AciI	CCGC	6 cut(s)	5, 29, 116, 128, 213, 404
AcoI	YGGCCR	2 cut(s)	129, 513
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	2 cut(s)	352, 821
AfaI	GTAC	5 cut(s)	92, 294, 477, 698, 812
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	281, 554, 659, 745
AjnI	CCWGG	1 cut(s)	748
AoxI	GGCC	7 cut(s)	106, 129, 139, 238, 499, 513, 775
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	1 cut(s)	841
AscI	GGCGCGCC	1 cut(s)	177
AseI	ATTAAT	1 cut(s)	431
AsiGI	ACCGGT	1 cut(s)	590
AspLEI	GCGC	4 cut(s)	179, 181, 579, 633
AspS9I	GGNCC	2 cut(s)	139, 499
AsuC2I	CCSGG	2 cut(s)	274, 563
AsuHPI	GGTGA	3 cut(s)	373, 418, 551
AsuII	TTCGAA	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	360, 711
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	6 cut(s)	326, 379, 406, 490, 524, 662
BceAI	ACGGC	5 cut(s)	55, 115, 121, 137, 528
BciT130I	CCWGG	1 cut(s)	750
BcnI	CCSGG	2 cut(s)	274, 563
BfaI	CTAG	2 cut(s)	167, 830
BfoI	RGCGCY	1 cut(s)	634
BisI	GCNGC	3 cut(s)	30, 129, 932
BlsI	GCNGC	3 cut(s)	31, 130, 933
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	3 cut(s)	274, 563, 750
BmgT120I	GGNCC	2 cut(s)	139, 499
BmrFI	CCNGG	3 cut(s)	274, 563, 750
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	3 cut(s)	111, 139, 736
BmuI	ACTGGG	1 cut(s)	305
BpiI	GAAGAC	2 cut(s)	360, 711
Bpu10I	CCTNAGC	1 cut(s)	460
Bpu14I	TTCGAA	1 cut(s)	586
BpuEI	CTTGAG	1 cut(s)	730
BpuMI	CCSGG	2 cut(s)	274, 563
BsaJI	CCNNGG	4 cut(s)	142, 182, 228, 749
BsaWI	WCCGGW	2 cut(s)	74, 590
BsaXI	ACNNNNNCTCC	6 cut(s)	69, 99, 138, 168, 885, 915
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	343, 869
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	4 cut(s)	142, 182, 228, 749
BseGI	GGATG	5 cut(s)	258, 337, 501, 516, 646
BseMI	GCAATG	2 cut(s)	343, 869
BseMII	CTCAG	3 cut(s)	405, 474, 614
BseNI	ACTGG	1 cut(s)	300
BsePI	GCGCGC	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	943
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	3 cut(s)	128, 179, 446
BshFI	GGCC	7 cut(s)	108, 131, 141, 240, 501, 515, 777
BshTI	ACCGGT	1 cut(s)	590
BsiSI	CCGG	5 cut(s)	75, 216, 273, 563, 591
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	7 cut(s)	108, 131, 141, 240, 501, 515, 777
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp19I	CCATGG	2 cut(s)	182, 228
BspACI	CCGC	6 cut(s)	5, 29, 116, 128, 213, 404
BspANI	GGCC	7 cut(s)	108, 131, 141, 240, 501, 515, 777
BspCNI	CTCAG	3 cut(s)	404, 473, 613
BspFNI	CGCG	3 cut(s)	128, 179, 446
BspT104I	TTCGAA	1 cut(s)	586
BsrDI	GCAATG	2 cut(s)	343, 869
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	4 cut(s)	142, 182, 228, 749
BssHII	GCGCGC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	2 cut(s)	182, 228
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	3 cut(s)	398, 815, 861
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	6 cut(s)	14, 126, 175, 179, 238, 635
BstDEI	CTNAG	3 cut(s)	391, 460, 600
BstDSI	CCRYGG	3 cut(s)	142, 182, 228
BstF5I	GGATG	5 cut(s)	258, 337, 501, 516, 646
BstFNI	CGCG	3 cut(s)	128, 179, 446
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	4 cut(s)	179, 181, 579, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 643
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	3 cut(s)	272, 561, 748
BstUI	CGCG	3 cut(s)	128, 179, 446
BstV1I	GCAGC	1 cut(s)	943
BstV2I	GAAGAC	2 cut(s)	360, 711
BsuRI	GGCC	7 cut(s)	108, 131, 141, 240, 501, 515, 777
BtgI	CCRYGG	3 cut(s)	142, 182, 228
BtsCI	GGATG	5 cut(s)	258, 337, 501, 516, 646
Cac8I	GCNNGC	6 cut(s)	14, 126, 175, 179, 238, 635
CfoI	GCGC	4 cut(s)	179, 181, 579, 633
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	139, 499
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	5 cut(s)	91, 293, 476, 697, 811
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	5 cut(s)	183, 229, 473, 580, 803
CviQI	GTAC	5 cut(s)	91, 293, 476, 697, 811
DdeI	CTNAG	3 cut(s)	391, 460, 600
EaeI	YGGCCR	2 cut(s)	129, 513
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	2 cut(s)	20, 202
Eco130I	CCWWGG	2 cut(s)	182, 228
Eco24I	GRGCYC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	352, 821
EcoRII	CCWGG	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	182, 228
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	182, 228
FaeI	CATG	5 cut(s)	186, 232, 476, 583, 806
FatI	CATG	5 cut(s)	182, 228, 472, 579, 802
FauI	CCCGC	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	3 cut(s)	30, 129, 932
FokI	GGATG	5 cut(s)	245, 344, 503, 508, 653
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	30, 129, 932
FspBI	CTAG	2 cut(s)	167, 830
GlaI	GCGC	4 cut(s)	178, 180, 578, 632
GluI	GCNGC	3 cut(s)	30, 129, 932
GsaI	CCCAGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	7 cut(s)	108, 131, 141, 240, 501, 515, 777
HapII	CCGG	5 cut(s)	75, 216, 273, 563, 591
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	4 cut(s)	179, 181, 579, 633
Hin1II	CATG	5 cut(s)	186, 232, 476, 583, 806
Hin6I	GCGC	4 cut(s)	177, 179, 577, 631
HinP1I	GCGC	4 cut(s)	177, 179, 577, 631
HinfI	GANTC	4 cut(s)	160, 277, 389, 756
HpaII	CCGG	5 cut(s)	75, 216, 273, 563, 591
HphI	GGTGA	3 cut(s)	373, 418, 551
Hpy166II	GTNNAC	5 cut(s)	508, 571, 616, 811, 970
Hpy188I	TCNGA	3 cut(s)	394, 603, 840
Hpy188III	TCNNGA	3 cut(s)	157, 167, 462
Hpy8I	GTNNAC	5 cut(s)	508, 571, 616, 811, 970
Hpy99I	CGWCG	2 cut(s)	101, 107
HpyAV	CCTTC	3 cut(s)	210, 598, 902
HpyCH4III	ACNGT	3 cut(s)	398, 815, 861
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	124, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 643
HpyF3I	CTNAG	3 cut(s)	391, 460, 600
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	186, 232, 476, 583, 806
HspAI	GCGC	4 cut(s)	177, 179, 577, 631
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	3 cut(s)	111, 139, 736
MaeI	CTAG	2 cut(s)	167, 830
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	815, 848
MboII	GAAGA	5 cut(s)	155, 365, 716, 722, 790
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	2 cut(s)	287, 841
MlyI	GAGTC	2 cut(s)	154, 383
Mph1103I	ATGCAT	1 cut(s)	796
MseI	TTAA	5 cut(s)	65, 431, 771, 879, 915
MslI	CAYNNNNRTG	2 cut(s)	147, 246
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	5 cut(s)	75, 216, 273, 563, 591
MspR9I	CCNGG	3 cut(s)	274, 563, 750
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	1 cut(s)	750
MvnI	CGCG	3 cut(s)	128, 179, 446
MwoI	GCNNNNNNNGC	2 cut(s)	233, 643
NciI	CCSGG	2 cut(s)	274, 563
NcoI	CCATGG	2 cut(s)	182, 228
NlaIII	CATG	5 cut(s)	186, 232, 476, 583, 806
NmuCI	GTSAC	1 cut(s)	815
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	476
NspV	TTCGAA	1 cut(s)	586
PalAI	GGCGCGCC	1 cut(s)	177
PauI	GCGCGC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 150, 240
PctI	GAATGC	1 cut(s)	794
PfeI	GAWTC	2 cut(s)	277, 756
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	31, 130, 933
PleI	GAGTC	2 cut(s)	154, 383
PpsI	GAGTC	2 cut(s)	154, 383
PshBI	ATTAAT	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	748
PspPI	GGNCC	2 cut(s)	139, 499
PteI	GCGCGC	1 cut(s)	177
RsaI	GTAC	5 cut(s)	92, 294, 477, 698, 812
RsaNI	GTAC	5 cut(s)	91, 293, 476, 697, 811
RseI	CAYNNNNRTG	2 cut(s)	147, 246
SaqAI	TTAA	5 cut(s)	65, 431, 771, 879, 915
SatI	GCNGC	3 cut(s)	30, 129, 932
Sau96I	GGNCC	2 cut(s)	139, 499
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	2 cut(s)	154, 383
ScrFI	CCNGG	3 cut(s)	274, 563, 750
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	111, 139, 736
SfuI	TTCGAA	1 cut(s)	586
SgsI	GGCGCGCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	2 cut(s)	147, 246
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	2 cut(s)	287, 841
SsiI	CCGC	6 cut(s)	5, 29, 116, 128, 213, 404
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	167, 830
StyD4I	CCNGG	3 cut(s)	272, 561, 748
StyI	CCWWGG	2 cut(s)	182, 228
TaaI	ACNGT	3 cut(s)	398, 815, 861
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	69, 96, 586
TasI	AATT	2 cut(s)	287, 841
TatI	WGTACW	3 cut(s)	475, 696, 810
TauI	GCSGC	2 cut(s)	32, 131
TfiI	GAWTC	2 cut(s)	277, 756
Tru1I	TTAA	5 cut(s)	65, 431, 771, 879, 915
Tru9I	TTAA	5 cut(s)	65, 431, 771, 879, 915
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	1 cut(s)	931
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	2 cut(s)	717, 853
TspGWI	ACGGA	2 cut(s)	159, 955
VspI	ATTAAT	1 cut(s)	431
XapI	RAATTY	1 cut(s)	841
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	969
XspI	CTAG	2 cut(s)	167, 830
ZrmI	AGTACT	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.