Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

2773313 .. 2774459

Gene Structure 1147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGACGAAGGCGGCAAGCAACTATGCGAGGCGGCGAAGAACGGCGACTCCGAGAAGCTCAAAACTCTAATAGACTCCGGAGCCGACGTGTCGTACTTCGACGGCGAAGGCCTCACTCCGCTTATGCACGCAGCCCAGCTTGGGCACGCCGCCGCAGTGAAGGCCCTTCTGGAAGCTGGTGCCCCCTGGAACGCTCTCAACCCTTCCAATCTCTCCGCCGGCGATTTAGCCATGAACGCCGGTCACGAGGAAGCCTACGAGCTCCTCCTCAATGCCGGGATTCAAGCTGAGCTGGTACTGGGAACGATTGCTAGGAGAGAAAATAACAATGGGGAGTGGAATGATGATTACTTGGAGGATAGAGTGAGCTTTAGTGAGGATAAGTTGATGGATGCCGAAAATAAGGCGGTGATGATGGCTTGGGAGAATCCATTAATGGAGGCACATGCGAAAGCTGTGTGCTCAAATCGGGGTCATATATTGAACATTGGATTTGGGATGGGTCTGGTGGACACTGCCATTCAGAAATACTCCCCTGCTTCGCATACTATCGTTGAGGCTCACCCTAATGTTTTCCAGCGTATGCTTGATGACGGTTGGGATAAGAAGGAAAATGTGACTATAATTTGTGGCCGGTGGCAGGATGTTGTGCATGAACTTCCGACTTTTGATGGGATTTTCTTTGATACGTATGGAGAGTATTATGATGACCTGAGAGAGTTTCACCAGCAACTTCCGGTATTGCTGAAGCCTGGGGGAATCTACTCTTTCTTCAATGGACTTTGTGGAGGTAATGCATTCTTCCATGTAGTTTACTGTCACATAGTTCAGCTAGAGCTTCAGAGTTCGGGTTACTCTACACAGTTCATTCCCTTGCCTGTTAAGGATTGCTTAGGAGAACAAGTTTGGGAGGGTGTCAAACAGAAGTATTGGCAGCTTGATACATATTACCTCCCTGTATGTCAGTCCTTGGAGGATTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

329

Amino Acids

36.46

Weight (kDa)

4.6

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	8 - 95	1.7e-12	Ankyrin repeats (3 copies)
Ank_4	PF13637	8 - 57	2.9e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	24 - 77	2.5e-07	Ankyrin repeats (many copies)
Ank	PF00023	37 - 67	6.8e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	7 cut(s)	12, 32, 119, 150, 153, 216, 407
AcoI	YGGCCR	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	767, 824
AfaI	GTAC	2 cut(s)	95, 297
AfiI	CCNNNNNNNGG	2 cut(s)	141, 640
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	284, 484, 775
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	185, 751
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
Alw21I	GWGCWC	2 cut(s)	264, 464
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	3 cut(s)	109, 162, 631
ApeKI	GCWGC	2 cut(s)	131, 934
AseI	ATTAAT	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	421, 554, 716
BaeGI	GKGCMC	2 cut(s)	147, 184
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	264, 464
BbvI	GCAGC	2 cut(s)	143, 946
BccI	CCATC	4 cut(s)	382, 409, 493, 665
BceAI	ACGGC	2 cut(s)	58, 118
BciT130I	CCWGG	2 cut(s)	187, 753
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	2 cut(s)	312, 833
BisI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	14, 34, 133, 151, 154, 936
Bme1390I	CCNGG	3 cut(s)	187, 277, 753
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	82, 181
BmrFI	CCNGG	3 cut(s)	187, 277, 753
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	892
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	185, 752, 969
BsaWI	WCCGGW	2 cut(s)	77, 736
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 72, 102, 888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 640
Bse118I	RCCGGY	3 cut(s)	218, 239, 633
Bse1I	ACTGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	187, 753
BseDI	CCNNGG	3 cut(s)	185, 752, 969
BseGI	GGATG	3 cut(s)	397, 504, 649
BseLI	CCNNNNNNNGG	2 cut(s)	141, 640
BseMII	CTCAG	2 cut(s)	279, 704
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	254, 257
BseSI	GKGCMC	2 cut(s)	147, 184
BseXI	GCAGC	2 cut(s)	143, 946
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	3 cut(s)	111, 164, 633
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	264, 464
BsiSI	CCGG	6 cut(s)	78, 219, 240, 276, 634, 737
BslI	CCNNNNNNNGG	2 cut(s)	141, 640
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	3 cut(s)	111, 164, 633
Bsp1286I	GDGCHC	4 cut(s)	147, 184, 264, 464
Bsp13I	TCCGGA	1 cut(s)	77
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	7 cut(s)	12, 32, 119, 150, 153, 216, 407
BspANI	GGCC	3 cut(s)	111, 164, 633
BspCNI	CTCAG	2 cut(s)	280, 705
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	82, 181
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	3 cut(s)	218, 239, 633
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	3 cut(s)	218, 239, 633
BssECI	CCNNGG	3 cut(s)	185, 752, 969
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	969
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	187, 753
Bst4CI	ACNGT	3 cut(s)	596, 818, 864
BstBAI	YACGTR	1 cut(s)	690
BstC8I	GCNNGC	4 cut(s)	17, 129, 147, 220
BstDEI	CTNAG	3 cut(s)	288, 713, 892
BstF5I	GGATG	3 cut(s)	397, 504, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 236
BstNI	CCWGG	2 cut(s)	187, 753
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	185, 275, 751
BstSLI	GKGCMC	2 cut(s)	147, 184
BstSNI	TACGTA	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	143, 946
BsuRI	GGCC	3 cut(s)	111, 164, 633
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	397, 504, 649
BtsI	GCAGTG	2 cut(s)	162, 513
BtsIMutI	CAGTG	2 cut(s)	162, 513
Cac8I	GCNNGC	4 cut(s)	17, 129, 147, 220
Cfr10I	RCCGGY	3 cut(s)	218, 239, 633
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	94, 296
CviAII	CATG	4 cut(s)	232, 446, 653, 806
CviQI	GTAC	2 cut(s)	94, 296
DdeI	CTNAG	3 cut(s)	288, 713, 892
EaeI	YGGCCR	1 cut(s)	631
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	262
Eco105I	TACGTA	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	969
Eco147I	AGGCCT	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	767, 824
EcoICRI	GAGCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	185, 751
EcoT14I	CCWWGG	1 cut(s)	969
EcoT22I	ATGCAT	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	969
FaeI	CATG	4 cut(s)	235, 449, 656, 809
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FatI	CATG	4 cut(s)	231, 445, 652, 805
Fnu4HI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
FokI	GGATG	3 cut(s)	404, 511, 656
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
FspBI	CTAG	2 cut(s)	312, 833
GluI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	111, 164, 633
HapII	CCGG	6 cut(s)	78, 219, 240, 276, 634, 737
Hin1II	CATG	4 cut(s)	235, 449, 656, 809
HinfI	GANTC	6 cut(s)	47, 74, 280, 427, 759, 977
HpaII	CCGG	6 cut(s)	78, 219, 240, 276, 634, 737
HphI	GGTGA	3 cut(s)	421, 554, 716
Hpy166II	GTNNAC	2 cut(s)	511, 814
Hpy188I	TCNGA	5 cut(s)	52, 525, 663, 843, 982
Hpy188III	TCNNGA	3 cut(s)	78, 170, 245
Hpy8I	GTNNAC	2 cut(s)	511, 814
Hpy99I	CGWCG	2 cut(s)	89, 104
HpyAV	CCTTC	5 cut(s)	101, 154, 176, 213, 601
HpyCH4III	ACNGT	3 cut(s)	596, 818, 864
HpyCH4IV	ACGT	2 cut(s)	87, 689
HpyCH4V	TGCA	3 cut(s)	127, 652, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 236
HpyF3I	CTNAG	3 cut(s)	288, 713, 892
HpySE526I	ACGT	2 cut(s)	87, 689
Hsp92II	CATG	4 cut(s)	235, 449, 656, 809
Kpn2I	TCCGGA	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	80, 267
Lsp1109I	GCAGC	2 cut(s)	143, 946
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	312, 833
MaeII	ACGT	2 cut(s)	87, 689
MaeIII	GTNAC	4 cut(s)	242, 616, 818, 851
MboII	GAAGA	3 cut(s)	49, 763, 793
MhlI	GDGCHC	4 cut(s)	147, 184, 264, 464
MluCI	AATT	1 cut(s)	624
MlyI	GAGTC	2 cut(s)	41, 68
MmeI	TCCRAC	1 cut(s)	686
Mph1103I	ATGCAT	1 cut(s)	799
MreI	CGCCGGCG	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	2 cut(s)	434, 882
MslI	CAYNNNNRTG	1 cut(s)	567
MspI	CCGG	6 cut(s)	78, 219, 240, 276, 634, 737
MspR9I	CCNGG	3 cut(s)	187, 277, 753
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	2 cut(s)	187, 753
MwoI	GCNNNNNNNGC	2 cut(s)	161, 236
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	277
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	4 cut(s)	235, 449, 656, 809
NlaIV	GGNNCC	2 cut(s)	82, 181
NmuCI	GTSAC	3 cut(s)	242, 616, 818
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 243
PctI	GAATGC	1 cut(s)	797
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	280, 427, 759, 977
PkrI	GCNGC	6 cut(s)	14, 34, 133, 151, 154, 936
PleI	GAGTC	2 cut(s)	41, 68
PpsI	GAGTC	2 cut(s)	41, 68
Ppu21I	YACGTR	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	185, 751
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	185, 751
PspN4I	GGNNCC	2 cut(s)	82, 181
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	95, 297
RsaNI	GTAC	2 cut(s)	94, 296
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	434, 882
SatI	GCNGC	6 cut(s)	13, 33, 132, 150, 153, 935
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	41, 68
ScrFI	CCNGG	3 cut(s)	187, 277, 753
SduI	GDGCHC	4 cut(s)	147, 184, 264, 464
SfaNI	GCATC	1 cut(s)	382
SgrAI	CRCCGGYG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	567
SnaBI	TACGTA	1 cut(s)	690
Sse9I	AATT	1 cut(s)	624
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	7 cut(s)	12, 32, 119, 150, 153, 216, 407
SspMI	CTAG	2 cut(s)	312, 833
SstI	GAGCTC	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	185, 275, 751
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	3 cut(s)	596, 818, 864
TaiI	ACGT	2 cut(s)	90, 692
TaqI	TCGA	1 cut(s)	99
TasI	AATT	1 cut(s)	624
TauI	GCSGC	4 cut(s)	15, 35, 152, 155
TfiI	GAWTC	4 cut(s)	280, 427, 759, 977
Tru1I	TTAA	2 cut(s)	434, 882
Tru9I	TTAA	2 cut(s)	434, 882
TscAI	CASTG	2 cut(s)	162, 520
TseFI	GTSAC	3 cut(s)	242, 616, 818
TseI	GCWGC	2 cut(s)	131, 934
Tsp45I	GTSAC	3 cut(s)	242, 616, 818
TspDTI	ATGAA	3 cut(s)	248, 669, 856
TspRI	CASTG	2 cut(s)	162, 520
VspI	ATTAAT	1 cut(s)	434
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	2 cut(s)	312, 833
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.