Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001634

Physical Location & Seq

Genomic Coordinates Reverse (-)

51723228 .. 51727661

Gene Structure 4434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTCATCCACAACAACAAGAAGAAGAACTGGGCAAACAAGCCATACGTTTAGCCAATGTCGTGATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGAGTCACTCTCACCGTCCGACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTAGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCAGATGGGCAGGTAGAGAGGTTATATAGTGCAGGACCCATATGCAAATTCCTTGTCAGGGATCAAAATGGAGGAACCGGGTCCGTTGGTCCTCTGTTTCTCTTGCACCATGATAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCATTTGAGTACCCAGAAACAGATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACCACATTGATCTTGAAGAAGATACTCGATGTTTATCGAGGGTTTGAGGGGATCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCCCACATTAAGGGCATCAATTTTGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGGTGTAGAGCATGTTGGGGGAGACATGTTTAAAAGTGTCCCACAAGGAGATGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGACCATTGTTTGACACTTCTCAAGAACTGCTGTAAATCTCTCCCTAGCTCTGGAAAAGTGATCTTTGTGGAATCCATTCTTCCTGAAGTACCTGATAGTAGCGTTACATCCAACATTGTCTGCGAGGACGATTTACTAATGTTTACTCAGAACCCAGGAGGTAAAGAGAGGACCAAAAAAGAGTACGAGGCCTTAGCACTGAACTCTGGATTTTCTCGATTGGAAGTGATTTGCTCTGCTTACAACAGCTGGGTCATGGAGTTCCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

357

Amino Acids

39.4

Weight (kDa)

5.54

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	17 - 109	2e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	134 - 339	6.4e-69	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67360
fragaria_vesca	FvH4_1g17150 FvH4_2g33321 FvH4_2g33321 FvH4_2g33321 FvH4_2g33321 FvH4_2g33340
malus_domestica	MD08G1087900.v1.1 MD08G1088000.v1.1 MD15G1072700.v1.1 MD15G1292900.v1.1
prunus_persica	Prupe.1G425400_v2.0.a1 Prupe.1G425500_v2.0.a1 Prupe.1G425600_v2.0.a1 Prupe.1G425700_v2.0.a1 Prupe.6G224600_v2.0.a1
pyrus_communis	pycom08g07160 pycom15g06800 pycom15g25580
rosa_chinensis	RchiOBHm_Chr2g0107331 RchiOBHm_Chr6g0309241 RchiOBHm_Chr6g0309251
rosa_laevigata	RLG00000010577 RLG00000010578 RLG00000017570
rosa_multiflora	Rmu_co8090004.1_g000001 Rmu_co8331721.1_g000001 Rmu_sc0007504.1_g000002 Rmu_sc0015692.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136430 Rroxscaffold_7G00159520 Rroxscaffold_7G00159530
rosa_rugosa	Rorug02G0142100 Rorug06G0370500 Rorug06G0370600
rosa_samantha	Rh2AG192800 Rh2BG204900 Rh2CG198000 Rh2DG200000 Rh6AG483900 Rh6AG484000 Rh6BG492900 Rh6BG493000 Rh6CG497800 Rh6CG497900 Rh6DG484400 Rh6DG484600
rosa_wichuraiana	Rw2G015270 Rw6G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	4 cut(s)	61, 274, 336, 590
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	314, 435
AcuI	CTGAAG	2 cut(s)	104, 906
AfaI	GTAC	4 cut(s)	476, 647, 891, 986
AfiI	CCNNNNNNNGG	5 cut(s)	76, 325, 382, 658, 851
AflIII	ACRYGT	2 cut(s)	682, 735
AgsI	TTSAA	5 cut(s)	98, 412, 499, 511, 547
AhdI	GACNNNNNGTC	1 cut(s)	139
AjiI	CACGTC	1 cut(s)	685
AjnI	CCWGG	3 cut(s)	513, 709, 955
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	6 cut(s)	92, 172, 399, 692, 849, 1050
AluI	AGCT	6 cut(s)	92, 172, 399, 692, 849, 1050
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	4 cut(s)	61, 274, 336, 590
AoxI	GGCC	5 cut(s)	228, 255, 450, 516, 990
ApoI	RAATTY	2 cut(s)	314, 435
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	876
AspS9I	GGNCC	8 cut(s)	208, 256, 261, 302, 348, 356, 450, 972
AsuC2I	CCSGG	3 cut(s)	197, 259, 346
AsuHPI	GGTGA	2 cut(s)	141, 628
AvaII	GGWCC	6 cut(s)	208, 261, 302, 348, 356, 972
BalI	TGGCCA	1 cut(s)	230
BccI	CCATC	2 cut(s)	70, 266
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	3 cut(s)	515, 711, 957
BcnI	CCSGG	3 cut(s)	197, 259, 346
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	2 cut(s)	689, 846
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	1 cut(s)	165
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	6 cut(s)	197, 259, 346, 515, 711, 957
Bme18I	GGWCC	6 cut(s)	208, 261, 302, 348, 356, 972
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	685
BmgT120I	GGNCC	8 cut(s)	208, 256, 261, 302, 348, 356, 450, 972
BmiI	GGNNCC	4 cut(s)	304, 343, 349, 404
BmrFI	CCNGG	6 cut(s)	197, 259, 346, 515, 711, 957
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	5 cut(s)	204, 406, 672, 685, 751
BmuI	ACTGGG	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bpu10I	CCTNAGC	2 cut(s)	218, 994
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	3 cut(s)	197, 259, 346
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	195, 955
BsaWI	WCCGGW	2 cut(s)	210, 263
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 325, 382, 658, 851
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	515, 711, 957
BseDI	CCNNGG	2 cut(s)	195, 955
BseGI	GGATG	3 cut(s)	7, 219, 908
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	5 cut(s)	76, 325, 382, 658, 851
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	182, 962
BseNI	ACTGG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	1050
BsgI	GTGCAG	2 cut(s)	147, 318
BshFI	GGCC	5 cut(s)	230, 257, 452, 518, 992
BsiSI	CCGG	5 cut(s)	197, 211, 259, 264, 345
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	5 cut(s)	76, 325, 382, 658, 851
BsmAI	GTCTC	1 cut(s)	726
BsmFI	GGGAC	1 cut(s)	734
BsnI	GGCC	5 cut(s)	230, 257, 452, 518, 992
Bsp143I	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	5 cut(s)	230, 257, 452, 518, 992
BspCNI	CTCAG	2 cut(s)	181, 961
BspHI	TCATGA	2 cut(s)	771, 787
BspLI	GGNNCC	4 cut(s)	304, 343, 349, 404
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	4 cut(s)	61, 274, 336, 590
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	195, 955
BssMI	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
Bst2UI	CCWGG	3 cut(s)	515, 711, 957
Bst4CI	ACNGT	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	130, 232
BstDEI	CTNAG	4 cut(s)	168, 218, 948, 994
BstF5I	GGATG	3 cut(s)	7, 219, 908
BstKTI	GATC	6 cut(s)	69, 269, 331, 543, 585, 864
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
BstNI	CCWGG	3 cut(s)	515, 711, 957
BstNSI	RCATGY	2 cut(s)	725, 739
BstSCI	CCNGG	6 cut(s)	195, 257, 344, 513, 709, 955
BsuRI	GGCC	5 cut(s)	230, 257, 452, 518, 992
BtrI	CACGTC	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	7, 219, 908
BtsIMutI	CAGTG	1 cut(s)	998
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	130, 232
CciI	TCATGA	2 cut(s)	771, 787
Cfr13I	GGNCC	8 cut(s)	208, 256, 261, 302, 348, 356, 450, 972
CpoI	CGGWCCG	1 cut(s)	261
Csp6I	GTAC	4 cut(s)	475, 646, 890, 985
CspI	CGGWCCG	1 cut(s)	261
CviAII	CATG	8 cut(s)	377, 391, 520, 722, 736, 772, 788, 1057
CviQI	GTAC	4 cut(s)	475, 646, 890, 985
DdeI	CTNAG	4 cut(s)	168, 218, 948, 994
DpnI	GATC	6 cut(s)	68, 268, 330, 542, 584, 863
DpnII	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
DraI	TTTAAA	1 cut(s)	742
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	992
Eco47I	GGWCC	6 cut(s)	208, 261, 302, 348, 356, 972
Eco57I	CTGAAG	2 cut(s)	104, 906
EcoO109I	RGGNCCY	2 cut(s)	302, 450
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	513, 709, 955
FaeI	CATG	8 cut(s)	380, 394, 523, 725, 739, 775, 791, 1060
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	8 cut(s)	376, 390, 519, 721, 735, 771, 787, 1056
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	226, 895
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	689, 846
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	1054
HaeIII	GGCC	5 cut(s)	230, 257, 452, 518, 992
HapII	CCGG	5 cut(s)	197, 211, 259, 264, 345
Hin1II	CATG	8 cut(s)	380, 394, 523, 725, 739, 775, 791, 1060
HinfI	GANTC	3 cut(s)	140, 781, 872
HpaII	CCGG	5 cut(s)	197, 211, 259, 264, 345
HphI	GGTGA	2 cut(s)	141, 628
Hpy166II	GTNNAC	1 cut(s)	945
Hpy188I	TCNGA	5 cut(s)	75, 84, 157, 271, 951
Hpy8I	GTNNAC	1 cut(s)	945
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	80, 422, 711
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	3 cut(s)	49, 105, 684
HpyCH4V	TGCA	4 cut(s)	128, 299, 312, 373
HpyF3I	CTNAG	4 cut(s)	168, 218, 948, 994
HpySE526I	ACGT	3 cut(s)	49, 105, 684
Hsp92II	CATG	8 cut(s)	380, 394, 523, 725, 739, 775, 791, 1060
Kzo9I	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
LmnI	GCTCC	2 cut(s)	177, 703
LweI	GCATC	5 cut(s)	204, 406, 672, 685, 751
MaeI	CTAG	2 cut(s)	689, 846
MaeII	ACGT	3 cut(s)	49, 105, 684
MaeIII	GTNAC	3 cut(s)	141, 619, 904
MalI	GATC	6 cut(s)	68, 268, 330, 542, 584, 863
MboI	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
MboII	GAAGA	6 cut(s)	35, 38, 559, 562, 776, 872
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	4 cut(s)	314, 435, 612, 667
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	3 cut(s)	180, 213, 936
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	4 cut(s)	444, 627, 657, 741
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	1050
MspI	CCGG	5 cut(s)	197, 211, 259, 264, 345
MspR9I	CCNGG	6 cut(s)	197, 259, 346, 515, 711, 957
MvaI	CCWGG	3 cut(s)	515, 711, 957
NciI	CCSGG	3 cut(s)	197, 259, 346
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
NlaIII	CATG	8 cut(s)	380, 394, 523, 725, 739, 775, 791, 1060
NlaIV	GGNNCC	4 cut(s)	304, 343, 349, 404
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	2 cut(s)	725, 739
PagI	TCATGA	2 cut(s)	771, 787
PceI	AGGCCT	1 cut(s)	992
PciI	ACATGT	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	2 cut(s)	781, 872
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	302
PscI	ACATGT	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	513, 709, 955
PspFI	CCCAGC	1 cut(s)	1050
PspGI	CCWGG	3 cut(s)	513, 709, 955
PspN4I	GGNNCC	4 cut(s)	304, 343, 349, 404
PspPI	GGNCC	8 cut(s)	208, 256, 261, 302, 348, 356, 450, 972
PspPPI	RGGWCCY	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	1050
RsaI	GTAC	4 cut(s)	476, 647, 891, 986
RsaNI	GTAC	4 cut(s)	475, 646, 890, 985
RseI	CAYNNNNRTG	1 cut(s)	411
Rsr2I	CGGWCCG	1 cut(s)	261
RsrII	CGGWCCG	1 cut(s)	261
SaqAI	TTAA	4 cut(s)	444, 627, 657, 741
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	66, 266, 328, 540, 582, 861
Sau96I	GGNCC	8 cut(s)	208, 256, 261, 302, 348, 356, 450, 972
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	6 cut(s)	197, 259, 346, 515, 711, 957
SfaNI	GCATC	5 cut(s)	204, 406, 672, 685, 751
SinI	GGWCC	6 cut(s)	208, 261, 302, 348, 356, 972
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	4 cut(s)	314, 435, 612, 667
SseBI	AGGCCT	1 cut(s)	992
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	2 cut(s)	689, 846
StuI	AGGCCT	1 cut(s)	992
StyD4I	CCNGG	6 cut(s)	195, 257, 344, 513, 709, 955
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	3 cut(s)	52, 108, 687
TaqI	TCGA	3 cut(s)	558, 568, 1018
TasI	AATT	4 cut(s)	314, 435, 612, 667
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	781, 872
Tru1I	TTAA	4 cut(s)	444, 627, 657, 741
Tru9I	TTAA	4 cut(s)	444, 627, 657, 741
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	379, 760, 776, 788
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	1005
VpaK11BI	GGWCC	6 cut(s)	208, 261, 302, 348, 356, 972
XapI	RAATTY	2 cut(s)	314, 435
XceI	RCATGY	2 cut(s)	725, 739
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	2 cut(s)	689, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.