Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001634

Physical Location & Seq

Genomic Coordinates Reverse (-)

12514091 .. 12514909

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGCTCTAGAAGAAGACCAAGACGACGTCGTTATAAACCCCGCCACAATGCTCCTCCGCGACGACGACTCCTACGAGGTCAAGATGGCGGAGAGCGAACAGCTCCGGCAGCATTCTCTGCCTTCGATCGAGTCCACAATCGTCACCAGGCAGCTCCCCTCGCAAGGTCTCTCCTTTCAGCTCTGGCCGGCGGCCACCACGCTCCTCACTCTCCTCGACGACCACCGCCGTGACCCCACCACGAGCCCCCTGGGCCCCACGCTCTCGGCGTTGGATTCCGGCCGGAGACTCAAGATCCTCGAACTAGGTTCTGGAACCGGCCTCGTCGGAATAGCCGCCGCCGCCACGCTCGGCGCGTGCGTCACGGTGACGGACCTCCCGCACGTCGTCGACAACCTAAAGTTCAATGCGGAACTAAACGCCGCCGTTTTGGGGGGGAGCGGCGGGAGTGTGAGAGTGGCGGCGCTGAGGTGGGGAGAGGCGGAGGACGCGGAGGCAATAGGGCGGGAGTTTGATATTGTATTGGCGTCGGATGTAGTGTATCACGACCACCTCTACGAGCCGCTGCTCAAAACGCTGTCGTTTCTGCTGTTGGGGGAGGGCGGCGTGGTGTTTGTGATGGCCCACTTGAGGAGGTGGAAGAAGGAGTCGGCCTTCTTCAAGAGGGCCAGGAAGCTTTTTGAGGTTGAGCTCTTGCACGTGGATCCTCCGTGCCAGGGATCGAGGGTGGGAGTTACTGTTTACCGTTTTACCGGGAAGCCAAGTAAGAAATTGTTGAATGGTGTCTCAGTGAACAATGTCAATGGCATTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009505 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0016787 GO:0017171 GO:0019538 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0048046 GO:0048316 GO:0048359 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

272

Amino Acids

29.52

Weight (kDa)

5.53

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	54 - 225	6.4e-31	Lysine methyltransferase
Methyltransf_23	PF13489	94 - 219	9.5e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67360
fragaria_vesca	FvH4_1g17150 FvH4_2g33321 FvH4_2g33321 FvH4_2g33321 FvH4_2g33321 FvH4_2g33340
malus_domestica	MD08G1087900.v1.1 MD08G1088000.v1.1 MD15G1072700.v1.1 MD15G1292900.v1.1
prunus_persica	Prupe.1G425400_v2.0.a1 Prupe.1G425500_v2.0.a1 Prupe.1G425600_v2.0.a1 Prupe.1G425700_v2.0.a1 Prupe.6G224600_v2.0.a1
pyrus_communis	pycom08g07160 pycom15g06800 pycom15g25580
rosa_chinensis	RchiOBHm_Chr2g0107331 RchiOBHm_Chr6g0309241 RchiOBHm_Chr6g0309251
rosa_laevigata	RLG00000010577 RLG00000010578 RLG00000017570
rosa_multiflora	Rmu_co8090004.1_g000001 Rmu_co8331721.1_g000001 Rmu_sc0007504.1_g000002 Rmu_sc0015692.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136430 Rroxscaffold_7G00159520 Rroxscaffold_7G00159530
rosa_rugosa	Rorug02G0142100 Rorug06G0370500 Rorug06G0370600
rosa_samantha	Rh2AG192800 Rh2BG204900 Rh2CG198000 Rh2DG200000 Rh6AG483900 Rh6AG484000 Rh6BG492900 Rh6BG493000 Rh6CG497800 Rh6CG497900 Rh6DG484400 Rh6DG484600
rosa_wichuraiana	Rw2G015270 Rw6G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AatII	GACGTC	1 cut(s)	33
AccBSI	CCGCTC	2 cut(s)	8, 444
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	3 cut(s)	63, 359, 494
AclWI	GGATC	4 cut(s)	292, 701, 714, 730
AcoI	YGGCCR	4 cut(s)	3, 188, 195, 283
AcvI	CACGTG	1 cut(s)	703
AcyI	GRCGYC	2 cut(s)	30, 530
AfiI	CCNNNNNNNGG	4 cut(s)	167, 435, 633, 719
AgsI	TTSAA	3 cut(s)	409, 664, 781
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	4 cut(s)	149, 252, 671, 717
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	5 cut(s)	106, 157, 184, 679, 694
AluI	AGCT	5 cut(s)	106, 157, 184, 679, 694
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	3 cut(s)	176, 283, 793
AlwI	GGATC	4 cut(s)	292, 701, 714, 730
AoxI	GGCC	9 cut(s)	3, 188, 195, 256, 283, 322, 624, 654, 669
ApaI	GGGCCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	112, 154, 568
AspLEI	GCGC	2 cut(s)	359, 469
AspS9I	GGNCC	5 cut(s)	256, 257, 376, 625, 669
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	2 cut(s)	139, 382
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	706
BanII	GRGCYC	3 cut(s)	251, 260, 696
BauI	CACGAG	1 cut(s)	244
BbrPI	CACGTG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	696
BbvCI	CCTCAGC	1 cut(s)	470
BbvI	GCAGC	3 cut(s)	124, 166, 555
BccI	CCATC	2 cut(s)	82, 616
BceAI	ACGGC	2 cut(s)	216, 413
BciT130I	CCWGG	4 cut(s)	151, 254, 673, 719
BcnI	CCSGG	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	176, 283, 793
BfaI	CTAG	2 cut(s)	11, 308
BfoI	RGCGCY	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	255
Bme1390I	CCNGG	5 cut(s)	151, 254, 673, 719, 757
Bme18I	GGWCC	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	5 cut(s)	256, 257, 376, 625, 669
BmiI	GGNNCC	4 cut(s)	258, 259, 319, 708
BmrFI	CCNGG	5 cut(s)	151, 254, 673, 719, 757
BpiI	GAAGAC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	278, 652
BpuMI	CCSGG	1 cut(s)	757
BsaAI	YACGTR	1 cut(s)	703
BsaHI	GRCGYC	2 cut(s)	30, 530
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	252, 253, 718
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 726, 756
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 435, 633, 719
Bse118I	RCCGGY	2 cut(s)	190, 320
BseBI	CCWGG	4 cut(s)	151, 254, 673, 719
BseDI	CCNNGG	3 cut(s)	252, 253, 718
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	4 cut(s)	167, 435, 633, 719
BseMII	CTCAG	2 cut(s)	461, 804
BseRI	GAGGAG	4 cut(s)	47, 197, 206, 649
BseSI	GKGCMC	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	124, 166, 555
Bsh1236I	CGCG	3 cut(s)	63, 359, 494
Bsh1285I	CGRYCG	2 cut(s)	132, 286
BshFI	GGCC	9 cut(s)	5, 190, 197, 258, 285, 324, 626, 656, 671
BsiEI	CGRYCG	2 cut(s)	132, 286
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	6 cut(s)	109, 191, 282, 286, 321, 756
BslI	CCNNNNNNNGG	4 cut(s)	167, 435, 633, 719
BsmAI	GTCTC	3 cut(s)	176, 283, 793
BsmI	GAATGC	2 cut(s)	115, 810
BsnI	GGCC	9 cut(s)	5, 190, 197, 258, 285, 324, 626, 656, 671
Bso31I	GGTCTC	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	3 cut(s)	251, 260, 696
Bsp143I	GATC	4 cut(s)	129, 297, 706, 722
BspANI	GGCC	9 cut(s)	5, 190, 197, 258, 285, 324, 626, 656, 671
BspCNI	CTCAG	2 cut(s)	462, 803
BspFNI	CGCG	3 cut(s)	63, 359, 494
BspLI	GGNNCC	4 cut(s)	258, 259, 319, 708
BspPI	GGATC	4 cut(s)	292, 701, 714, 730
BspTNI	GGTCTC	1 cut(s)	176
BsrBI	CCGCTC	2 cut(s)	8, 444
BsrFI	RCCGGY	2 cut(s)	190, 320
BssAI	RCCGGY	2 cut(s)	190, 320
BssECI	CCNNGG	3 cut(s)	252, 253, 718
BssMI	GATC	4 cut(s)	129, 297, 706, 722
BssNI	GRCGYC	2 cut(s)	30, 530
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	4 cut(s)	151, 254, 673, 719
Bst4CI	ACNGT	3 cut(s)	370, 742, 749
BstACI	GRCGYC	2 cut(s)	30, 530
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	192, 361
BstDEI	CTNAG	2 cut(s)	470, 790
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	3 cut(s)	63, 359, 494
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	359, 469
BstKTI	GATC	4 cut(s)	132, 300, 709, 725
BstMAI	GTCTC	3 cut(s)	176, 283, 793
BstMBI	GATC	4 cut(s)	129, 297, 706, 722
BstMCI	CGRYCG	2 cut(s)	132, 286
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 121, 163, 255, 344, 491, 577
BstNI	CCWGG	4 cut(s)	151, 254, 673, 719
BstSCI	CCNGG	5 cut(s)	149, 252, 671, 717, 755
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	3 cut(s)	63, 359, 494
BstV1I	GCAGC	3 cut(s)	124, 166, 555
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	297, 706
BstYI	RGATCY	2 cut(s)	297, 706
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	9 cut(s)	5, 190, 197, 258, 285, 324, 626, 656, 671
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	2 cut(s)	192, 361
CfoI	GCGC	2 cut(s)	359, 469
Cfr10I	RCCGGY	2 cut(s)	190, 320
Cfr13I	GGNCC	5 cut(s)	256, 257, 376, 625, 669
CseI	GACGC	3 cut(s)	352, 500, 519
DdeI	CTNAG	2 cut(s)	470, 790
DpnI	GATC	4 cut(s)	131, 299, 708, 724
DpnII	GATC	4 cut(s)	129, 297, 706, 722
EaeI	YGGCCR	4 cut(s)	3, 188, 195, 283
EagI	CGGCCG	1 cut(s)	283
EciI	GGCGGA	2 cut(s)	107, 500
Ecl136II	GAGCTC	1 cut(s)	694
EclXI	CGGCCG	1 cut(s)	283
Eco24I	GRGCYC	3 cut(s)	251, 260, 696
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	694
Eco72I	CACGTG	1 cut(s)	703
EcoICRI	GAGCTC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	4 cut(s)	149, 252, 671, 717
EcoT38I	GRGCYC	3 cut(s)	251, 260, 696
FaiI	YATR	1 cut(s)	38
FauI	CCCGC	4 cut(s)	52, 390, 440, 501
FblI	GTMKAC	1 cut(s)	393
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	3 cut(s)	251, 260, 696
FspBI	CTAG	2 cut(s)	11, 308
GlaI	GCGC	2 cut(s)	358, 468
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	9 cut(s)	5, 190, 197, 258, 285, 324, 626, 656, 671
HapII	CCGG	6 cut(s)	109, 191, 282, 286, 321, 756
HgaI	GACGC	3 cut(s)	352, 500, 519
HhaI	GCGC	2 cut(s)	359, 469
Hin1I	GRCGYC	2 cut(s)	30, 530
Hin6I	GCGC	2 cut(s)	357, 467
HinP1I	GCGC	2 cut(s)	357, 467
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	5 cut(s)	71, 134, 278, 291, 650
HpaII	CCGG	6 cut(s)	109, 191, 282, 286, 321, 756
HphI	GGTGA	2 cut(s)	139, 382
Hpy166II	GTNNAC	4 cut(s)	138, 394, 745, 796
Hpy188I	TCNGA	2 cut(s)	332, 535
Hpy188III	TCNNGA	6 cut(s)	11, 85, 295, 315, 548, 664
Hpy8I	GTNNAC	4 cut(s)	138, 394, 745, 796
Hpy99I	CGWCG	9 cut(s)	32, 35, 68, 71, 224, 332, 392, 395, 535
HpyAV	CCTTC	3 cut(s)	135, 640, 667
HpyCH4III	ACNGT	3 cut(s)	370, 742, 749
HpyCH4IV	ACGT	3 cut(s)	30, 387, 702
HpyCH4V	TGCA	1 cut(s)	700
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 121, 163, 255, 344, 491, 577
HpyF3I	CTNAG	2 cut(s)	470, 790
HpySE526I	ACGT	3 cut(s)	30, 387, 702
Hsp92I	GRCGYC	2 cut(s)	30, 530
HspAI	GCGC	2 cut(s)	357, 467
KroI	GCCGGC	1 cut(s)	190
KroNI	GCCGGC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	129, 297, 706, 722
LmnI	GCTCC	5 cut(s)	60, 111, 162, 210, 441
Lsp1109I	GCAGC	3 cut(s)	124, 166, 555
MaeI	CTAG	2 cut(s)	11, 308
MaeII	ACGT	3 cut(s)	30, 387, 702
MaeIII	GTNAC	5 cut(s)	145, 233, 364, 370, 736
MalI	GATC	4 cut(s)	131, 299, 708, 724
MbiI	CCGCTC	2 cut(s)	8, 444
MboI	GATC	4 cut(s)	129, 297, 706, 722
MboII	GAAGA	4 cut(s)	26, 29, 652, 655
MflI	RGATCY	2 cut(s)	297, 706
MhlI	GDGCHC	3 cut(s)	251, 260, 696
MluCI	AATT	1 cut(s)	773
MlyI	GAGTC	4 cut(s)	65, 143, 285, 659
MmeI	TCCRAC	3 cut(s)	255, 310, 513
MroNI	GCCGGC	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	6 cut(s)	109, 191, 282, 286, 321, 756
MspR9I	CCNGG	5 cut(s)	151, 254, 673, 719, 757
Mva1269I	GAATGC	2 cut(s)	115, 810
MvaI	CCWGG	4 cut(s)	151, 254, 673, 719
MvnI	CGCG	3 cut(s)	63, 359, 494
MwoI	GCNNNNNNNGC	7 cut(s)	112, 121, 163, 255, 344, 491, 577
NaeI	GCCGGC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	757
NdeII	GATC	4 cut(s)	129, 297, 706, 722
NgoMIV	GCCGGC	1 cut(s)	190
NlaIV	GGNNCC	4 cut(s)	258, 259, 319, 708
NmeAIII	GCCGAG	2 cut(s)	248, 333
NmuCI	GTSAC	4 cut(s)	145, 233, 364, 370
OliI	CACNNNNGTG	1 cut(s)	231
PasI	CCCWGGG	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 269, 356, 360
PctI	GAATGC	2 cut(s)	115, 810
PdiI	GCCGGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	29
Ple19I	CGATCG	1 cut(s)	132
PleI	GAGTC	4 cut(s)	65, 142, 285, 658
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
PpsI	GAGTC	4 cut(s)	65, 142, 285, 658
Ppu21I	YACGTR	1 cut(s)	703
PsiI	TTATAA	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	4 cut(s)	149, 252, 671, 717
PspCI	CACGTG	1 cut(s)	703
PspGI	CCWGG	4 cut(s)	149, 252, 671, 717
PspN4I	GGNNCC	4 cut(s)	258, 259, 319, 708
PspOMI	GGGCCC	1 cut(s)	256
PspPI	GGNCC	5 cut(s)	256, 257, 376, 625, 669
PsuI	RGATCY	2 cut(s)	297, 706
PsyI	GACNNNGTC	1 cut(s)	29
PvuI	CGATCG	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	696
SalI	GTCGAC	1 cut(s)	392
Sau3AI	GATC	4 cut(s)	129, 297, 706, 722
Sau96I	GGNCC	5 cut(s)	256, 257, 376, 625, 669
SchI	GAGTC	4 cut(s)	65, 143, 285, 659
ScrFI	CCNGG	5 cut(s)	151, 254, 673, 719, 757
SduI	GDGCHC	3 cut(s)	251, 260, 696
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	293, 631
SmoI	CTYRAG	2 cut(s)	293, 631
Sse9I	AATT	1 cut(s)	773
SspMI	CTAG	2 cut(s)	11, 308
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	5 cut(s)	149, 252, 671, 717, 755
TaaI	ACNGT	3 cut(s)	370, 742, 749
TaiI	ACGT	3 cut(s)	33, 390, 705
TaqI	TCGA	6 cut(s)	128, 132, 219, 303, 393, 725
TasI	AATT	1 cut(s)	773
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	4 cut(s)	145, 233, 364, 370
TseI	GCWGC	3 cut(s)	112, 154, 568
Tsp45I	GTSAC	4 cut(s)	145, 233, 364, 370
TspGWI	ACGGA	2 cut(s)	389, 702
TspRI	CASTG	1 cut(s)	798
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	376
XbaI	TCTAGA	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	2 cut(s)	11, 308
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.