Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001634

Physical Location & Seq

Genomic Coordinates Forward (+)

2763567 .. 2764567

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGATATGAGCTTCATACAACTCGGACACCAGAATTTCTTCGATTAACAGGACAATATGAAGCTGTCTTCCTAGCATCAGGCAATGTGAGTGAGGTGGTCATCGGACTTGTAGACACTGGTGTATGGCCTGAGAGCAAAAGCTACAATGACAAGGGTCTTGCACCTGTGCCAAGGAGCTGGAAAGGGCAGTGCGAGGAGGTTCAGGACTTCAACTCCTCAAGCTGCAACAGGAAACTGATTGGCGCCAGGTTTTTCTCAAAAGGGTATGAAGCAGCACTTGGACACATGAATGAAAAGTTAGAATCAAGATCACCACGAGATGATGACGGCCATGGAACTCACACCTCCAGCATTGCAGCTGGATCCCCTGTTCTAGGAGCTAGCCTCTTTGGTTACGCGTCAGGGACAGCACGGGGAATGGCTGCACAAGCTCGTGTTGCCACATATAAGGCATGCTGGCTTAGAGTTTGTTTCAGCTCTGATGTTCTAGCCGCAATGGACAAGGCTATTAAAGATGGTGTCAACATTTTATCCTTGTCTTTGTCTTTTCCGGGAGCACAATACGAGGATTTCTCCACAGACATTGTTGCTATTGGAGCTTTTTCTGCCATGACCAAGGGAGTATTTGTGTCATGTTCAGCTGGAAATGATGGGCCAATTTCCTATACCTCATCCAACAATACACCTCGGATAACCACTGTGGGTGCTGGAACACTAGACCGGGACTTCCCTGCTTATGTTAGTCTTGGAAATGGAAAGAAATACAGAGGTATAGCACTTGATCGCGGTATAGCATCATCATCTAGTGGGTTACATCCCCTTGTTTATGCTTCTAATGCAAGTAACTCCACAAGTGGTGATCAATGCTCTCCTAACAGTTTGATTCCTGAGATGGTTGCTGGGAAAATTGTGGGTCAGAAAGAGTGTGGTGGTAAAAAAGGCTGGTGGGGTAGGGATGATTATGGCAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

326

Amino Acids

34.55

Weight (kDa)

8.09

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	32 - 290	1.3e-18	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67360
fragaria_vesca	FvH4_1g17150 FvH4_2g33321 FvH4_2g33321 FvH4_2g33321 FvH4_2g33321 FvH4_2g33340
malus_domestica	MD08G1087900.v1.1 MD08G1088000.v1.1 MD15G1072700.v1.1 MD15G1292900.v1.1
prunus_persica	Prupe.1G425400_v2.0.a1 Prupe.1G425500_v2.0.a1 Prupe.1G425600_v2.0.a1 Prupe.1G425700_v2.0.a1 Prupe.6G224600_v2.0.a1
pyrus_communis	pycom08g07160 pycom15g06800 pycom15g25580
rosa_chinensis	RchiOBHm_Chr2g0107331 RchiOBHm_Chr6g0309241 RchiOBHm_Chr6g0309251
rosa_laevigata	RLG00000010577 RLG00000010578 RLG00000017570
rosa_multiflora	Rmu_co8090004.1_g000001 Rmu_co8331721.1_g000001 Rmu_sc0007504.1_g000002 Rmu_sc0015692.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136430 Rroxscaffold_7G00159520 Rroxscaffold_7G00159530
rosa_rugosa	Rorug02G0142100 Rorug06G0370500 Rorug06G0370600
rosa_samantha	Rh2AG192800 Rh2BG204900 Rh2CG198000 Rh2DG200000 Rh6AG483900 Rh6AG484000 Rh6BG492900 Rh6BG493000 Rh6CG497800 Rh6CG497900 Rh6DG484400 Rh6DG484600
rosa_wichuraiana	Rw2G015270 Rw6G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	401, 789
AciI	CCGC	2 cut(s)	495, 789
AclWI	GGATC	2 cut(s)	360, 373
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
Alw21I	GWGCWC	1 cut(s)	562
AlwI	GGATC	2 cut(s)	360, 373
AoxI	GGCC	3 cut(s)	128, 331, 656
ApeKI	GCWGC	4 cut(s)	225, 275, 359, 425
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	2 cut(s)	555, 725
AsuHPI	GGTGA	2 cut(s)	306, 872
AsuNHI	GCTAGC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	245
BauI	CACGAG	2 cut(s)	318, 435
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	4 cut(s)	212, 287, 371, 412
BccI	CCATC	3 cut(s)	512, 647, 889
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	250
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	2 cut(s)	555, 725
BfaI	CTAG	6 cut(s)	74, 377, 384, 491, 719, 807
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	5 cut(s)	226, 276, 360, 426, 495
BlsI	GCNGC	5 cut(s)	227, 277, 361, 427, 496
Bme1390I	CCNGG	3 cut(s)	250, 555, 725
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	2 cut(s)	247, 367
BmrFI	CCNGG	3 cut(s)	250, 555, 725
BmsI	GCATC	2 cut(s)	86, 806
BmtI	GCTAGC	1 cut(s)	387
BoxI	GACNNNNGTC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	61
BplI	GAGNNNNNCTC	4 cut(s)	372, 404, 560, 592
BpmI	CTGGAG	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	2 cut(s)	555, 725
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	173, 334, 618, 689
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	3 cut(s)	91, 354, 504
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	4 cut(s)	173, 334, 618, 689
BseGI	GGATG	3 cut(s)	674, 817, 964
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	3 cut(s)	91, 354, 504
BseMII	CTCAG	2 cut(s)	123, 882
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	208, 212
BseXI	GCAGC	4 cut(s)	212, 287, 371, 412
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	2 cut(s)	401, 789
BshFI	GGCC	3 cut(s)	130, 333, 658
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	554, 724
BslFI	GGGAC	2 cut(s)	421, 740
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	421, 740
BsnI	GGCC	3 cut(s)	130, 333, 658
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	311, 365, 784, 862
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	2 cut(s)	495, 789
BspANI	GGCC	3 cut(s)	130, 333, 658
BspCNI	CTCAG	2 cut(s)	124, 883
BspFNI	CGCG	2 cut(s)	401, 789
BspLI	GGNNCC	2 cut(s)	247, 367
BspOI	GCTAGC	1 cut(s)	387
BspPI	GGATC	2 cut(s)	360, 373
BspT107I	GGYRCC	1 cut(s)	245
BsrDI	GCAATG	3 cut(s)	91, 354, 504
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	4 cut(s)	173, 334, 618, 689
BssMI	GATC	4 cut(s)	311, 365, 784, 862
BssNI	GRCGYC	1 cut(s)	246
BssSI	CACGAG	2 cut(s)	318, 435
BssT1I	CCWWGG	3 cut(s)	173, 334, 618
Bst2BI	CACGAG	2 cut(s)	318, 435
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	703, 881
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	385, 457, 461
BstDEI	CTNAG	3 cut(s)	132, 464, 891
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	674, 817, 964
BstFNI	CGCG	2 cut(s)	401, 789
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	4 cut(s)	314, 368, 787, 865
BstMBI	GATC	4 cut(s)	311, 365, 784, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	431, 440, 599, 608, 839
BstNI	CCWGG	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	459
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	3 cut(s)	248, 553, 723
BstUI	CGCG	2 cut(s)	401, 789
BstV1I	GCAGC	4 cut(s)	212, 287, 371, 412
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	130, 333, 658
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	674, 817, 964
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	3 cut(s)	117, 197, 699
Cac8I	GCNNGC	3 cut(s)	385, 457, 461
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	390
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	5 cut(s)	289, 335, 456, 613, 636
DdeI	CTNAG	3 cut(s)	132, 464, 891
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	4 cut(s)	313, 367, 786, 864
DpnII	GATC	4 cut(s)	311, 365, 784, 862
EaeI	YGGCCR	1 cut(s)	331
Eco130I	CCWWGG	3 cut(s)	173, 334, 618
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	3 cut(s)	173, 334, 618
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
ErhI	CCWWGG	3 cut(s)	173, 334, 618
FaeI	CATG	5 cut(s)	292, 338, 459, 616, 639
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	421, 740
FatI	CATG	5 cut(s)	288, 334, 455, 612, 635
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	226, 276, 360, 426, 495
FokI	GGATG	3 cut(s)	661, 804, 971
Fsp4HI	GCNGC	5 cut(s)	226, 276, 360, 426, 495
FspBI	CTAG	6 cut(s)	74, 377, 384, 491, 719, 807
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	5 cut(s)	226, 276, 360, 426, 495
GsaI	CCCAGC	1 cut(s)	906
GsuI	CTGGAG	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	130, 333, 658
HapII	CCGG	2 cut(s)	554, 724
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	292, 338, 459, 616, 639
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	305, 886
HpaII	CCGG	2 cut(s)	554, 724
HphI	GGTGA	2 cut(s)	306, 872
Hpy166II	GTNNAC	2 cut(s)	115, 526
Hpy188I	TCNGA	5 cut(s)	27, 107, 484, 693, 921
Hpy188III	TCNNGA	3 cut(s)	206, 309, 890
Hpy8I	GTNNAC	2 cut(s)	115, 526
HpyCH4III	ACNGT	2 cut(s)	703, 881
HpyCH4V	TGCA	5 cut(s)	164, 228, 359, 428, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	431, 440, 599, 608, 839
HpyF3I	CTNAG	3 cut(s)	132, 464, 891
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	292, 338, 459, 616, 639
HspAI	GCGC	1 cut(s)	246
KasI	GGCGCC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	4 cut(s)	311, 365, 784, 862
LmnI	GCTCC	4 cut(s)	177, 380, 557, 599
Lsp1109I	GCAGC	4 cut(s)	212, 287, 371, 412
LweI	GCATC	2 cut(s)	86, 806
MaeI	CTAG	6 cut(s)	74, 377, 384, 491, 719, 807
MaeIII	GTNAC	3 cut(s)	395, 813, 845
MalI	GATC	4 cut(s)	313, 367, 786, 864
MboI	GATC	4 cut(s)	311, 365, 784, 862
MboII	GAAGA	2 cut(s)	32, 61
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	3 cut(s)	35, 660, 909
MluI	ACGCGT	1 cut(s)	399
Mly113I	GGCGCC	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	702
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	2 cut(s)	47, 513
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	2 cut(s)	362, 644
MspI	CCGG	2 cut(s)	554, 724
MspR9I	CCNGG	3 cut(s)	250, 555, 725
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	2 cut(s)	401, 789
MwoI	GCNNNNNNNGC	5 cut(s)	431, 440, 599, 608, 839
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	2 cut(s)	555, 725
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	4 cut(s)	311, 365, 784, 862
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	5 cut(s)	292, 338, 459, 616, 639
NlaIV	GGNNCC	2 cut(s)	247, 367
NspI	RCATGY	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	305, 886
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	5 cut(s)	227, 277, 361, 427, 496
PluTI	GGCGCC	1 cut(s)	249
PshAI	GACNNNNGTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	247, 367
PspPI	GGNCC	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	365
PvuII	CAGCTG	2 cut(s)	362, 644
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	47, 513
SatI	GCNGC	5 cut(s)	226, 276, 360, 426, 495
Sau3AI	GATC	4 cut(s)	311, 365, 784, 862
Sau96I	GGNCC	1 cut(s)	656
ScrFI	CCNGG	3 cut(s)	250, 555, 725
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	86, 806
SfoI	GGCGCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	3 cut(s)	35, 660, 909
SsiI	CCGC	2 cut(s)	495, 789
SspDI	GGCGCC	1 cut(s)	245
SspMI	CTAG	6 cut(s)	74, 377, 384, 491, 719, 807
StyD4I	CCNGG	3 cut(s)	248, 553, 723
StyI	CCWWGG	3 cut(s)	173, 334, 618
TaaI	ACNGT	2 cut(s)	703, 881
TaqI	TCGA	1 cut(s)	43
TasI	AATT	3 cut(s)	35, 660, 909
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	305, 886
Tru1I	TTAA	2 cut(s)	47, 513
Tru9I	TTAA	2 cut(s)	47, 513
TscAI	CASTG	3 cut(s)	124, 197, 706
TseI	GCWGC	4 cut(s)	225, 275, 359, 425
TspDTI	ATGAA	5 cut(s)	5, 75, 285, 305, 309
TspRI	CASTG	3 cut(s)	124, 197, 706
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	6 cut(s)	74, 377, 384, 491, 719, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.