Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

5774838 .. 5776007

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAAGAAGGCGCGCAACTATGTGAGGCGGCGAGGAACGGCGACACCGAGAAGCTGAAGGCTCTAATACTCGCCGGAGCTGACGTTACGTACTTCGACGGTGAAGGCCTCAATCCGCTGATGCACGCCGCCAAGCTGGGCCACGCCGACGCCGTCACTGCCCTTCTAGAAGCTGGCGCGCCCTGGAACGCCTTATCCCCCTCCAATCTCTCCGCCGGCGATTTCGCGATGGAAGCAGGCCACGAGGACGCCTACGACATCCTCCTCAATGCCGGGATTCAAGCTGAATTGGTACTCGGAACGATTGCGCGGAGGGAGAAGAAAGACGGGGATAGCGATGGTGATTATTTGGAAGACAGAGTGAGCTTTAGTGAGGATAAGCTTATGGACTCGAATTGTAAGGCGGTGATGATGGCGTGGGAGCATCCGTTAATGGAGGCACACGCGAAAGCGGTTTGTTCCGGAGGTGGCCATATATTGAACATTGGATTTGGAATGGGGCTTGTGGATACAGCCATTCAGAAATACTCCCCTGCTTCGCACACCATCGTTGAGGCTCACCCGGAGGTTTATCAGCGTATGATTCGAACCGGTTGGGCTCAGAAGGATAATGTGAACATAATATTCGGTCGATGGCAGGATGTGCTACCTCAGCTTAAATCATATGATGGGATTTTCTTTGACACCTACGGAGAGTACTACGAAGACCTGAGAGAGTTCCACCAGCATCTTCCCGTGTTGTTGAAGCCTGGGGGAATCTACTCGTTCTTCAATGGCCTTTGCGGAGGTAATGCGTTCTTCCATGTTGTGTACTGTCATTTGGTCTCTCTAGAGCTTCAGAATTTGGGGTACTCTACACAGTTCATTCCATTGCCTGTCAAGGATTGTTTAGGAGACGAAGTTTGGGAAGGTGTCAAACAAAAGTATTGGCAGCTCGATACTTATTACCTCCCTGTTTGTCAGTCTGTAGATGATACGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

328

Amino Acids

36.18

Weight (kDa)

4.69

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	14, 179, 227, 310, 446
AccIII	TCCGGA	1 cut(s)	461
AciI	CCGC	8 cut(s)	29, 116, 129, 213, 310, 404, 452, 783
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	2 cut(s)	77, 821
AcyI	GRCGYC	2 cut(s)	150, 249
AfaI	GTAC	5 cut(s)	92, 294, 698, 812, 851
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	281, 481, 745, 772
AjnI	CCWGG	2 cut(s)	182, 748
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
Alw26I	GTCTC	2 cut(s)	829, 888
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	5 cut(s)	106, 139, 238, 469, 775
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	1 cut(s)	841
AscI	GGCGCGCC	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	590
AspLEI	GCGC	5 cut(s)	14, 16, 179, 181, 310
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	2 cut(s)	274, 563
AsuHPI	GGTGA	4 cut(s)	113, 353, 418, 551
AsuII	TTCGAA	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	360, 711
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	6 cut(s)	223, 332, 406, 554, 627, 662
BceAI	ACGGC	2 cut(s)	55, 137
BciT130I	CCWGG	2 cut(s)	184, 750
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	2 cut(s)	274, 563
BcoDI	GTCTC	2 cut(s)	829, 888
BfaI	CTAG	2 cut(s)	167, 830
BfmI	CTRYAG	1 cut(s)	966
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	3 cut(s)	30, 129, 932
BlsI	GCNGC	3 cut(s)	31, 130, 933
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	4 cut(s)	184, 274, 563, 750
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	4 cut(s)	184, 274, 563, 750
BmsI	GCATC	3 cut(s)	111, 433, 736
BpiI	GAAGAC	2 cut(s)	360, 711
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	586
BpuMI	CCSGG	2 cut(s)	274, 563
BsaAI	YACGTR	1 cut(s)	90
BsaHI	GRCGYC	2 cut(s)	150, 249
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	182, 749
BsaWI	WCCGGW	2 cut(s)	461, 590
BsaXI	ACNNNNNCTCC	6 cut(s)	69, 99, 413, 443, 885, 915
Bse118I	RCCGGY	2 cut(s)	215, 590
Bse3DI	GCAATG	1 cut(s)	869
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	184, 750
BseDI	CCNNGG	2 cut(s)	182, 749
BseGI	GGATG	3 cut(s)	258, 424, 646
BseMI	GCAATG	1 cut(s)	869
BseMII	CTCAG	3 cut(s)	614, 665, 701
BsePI	GCGCGC	2 cut(s)	12, 177
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	943
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	5 cut(s)	14, 179, 227, 310, 446
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	5 cut(s)	108, 141, 240, 471, 777
BshTI	ACCGGT	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	631
BsiSI	CCGG	6 cut(s)	75, 216, 273, 462, 563, 591
BsmAI	GTCTC	2 cut(s)	829, 888
BsmBI	CGTCTC	1 cut(s)	888
BsnI	GGCC	5 cut(s)	108, 141, 240, 471, 777
Bso31I	GGTCTC	1 cut(s)	829
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp13I	TCCGGA	1 cut(s)	461
Bsp68I	TCGCGA	1 cut(s)	227
BspACI	CCGC	8 cut(s)	29, 116, 129, 213, 310, 404, 452, 783
BspANI	GGCC	5 cut(s)	108, 141, 240, 471, 777
BspCNI	CTCAG	3 cut(s)	613, 664, 702
BspEI	TCCGGA	1 cut(s)	461
BspFNI	CGCG	5 cut(s)	14, 179, 227, 310, 446
BspT104I	TTCGAA	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	869
BsrFI	RCCGGY	2 cut(s)	215, 590
BssAI	RCCGGY	2 cut(s)	215, 590
BssECI	CCNNGG	2 cut(s)	182, 749
BssHII	GCGCGC	2 cut(s)	12, 177
BssNI	GRCGYC	2 cut(s)	150, 249
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	184, 750
Bst4CI	ACNGT	3 cut(s)	101, 815, 861
BstACI	GRCGYC	2 cut(s)	150, 249
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstBAI	YACGTR	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	6 cut(s)	14, 126, 175, 179, 217, 238
BstDEI	CTNAG	3 cut(s)	600, 651, 710
BstF5I	GGATG	3 cut(s)	258, 424, 646
BstFNI	CGCG	5 cut(s)	14, 179, 227, 310, 446
BstHHI	GCGC	5 cut(s)	14, 16, 179, 181, 310
BstMAI	GTCTC	2 cut(s)	829, 888
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 233, 643, 652
BstNI	CCWGG	2 cut(s)	184, 750
BstSCI	CCNGG	4 cut(s)	182, 272, 561, 748
BstSFI	CTRYAG	1 cut(s)	966
BstSNI	TACGTA	1 cut(s)	90
BstUI	CGCG	5 cut(s)	14, 179, 227, 310, 446
BstV1I	GCAGC	1 cut(s)	943
BstV2I	GAAGAC	2 cut(s)	360, 711
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	5 cut(s)	108, 141, 240, 471, 777
BtgZI	GCGATG	2 cut(s)	242, 351
BtsCI	GGATG	3 cut(s)	258, 424, 646
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	227
Cac8I	GCNNGC	6 cut(s)	14, 126, 175, 179, 217, 238
CfoI	GCGC	5 cut(s)	14, 16, 179, 181, 310
Cfr10I	RCCGGY	2 cut(s)	215, 590
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	2 cut(s)	158, 257
Csp6I	GTAC	5 cut(s)	91, 293, 697, 811, 850
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	1 cut(s)	803
CviQI	GTAC	5 cut(s)	91, 293, 697, 811, 850
DdeI	CTNAG	3 cut(s)	600, 651, 710
EaeI	YGGCCR	1 cut(s)	469
EciI	GGCGGA	1 cut(s)	202
Eco105I	TACGTA	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	829
Eco57I	CTGAAG	2 cut(s)	77, 821
EcoRII	CCWGG	2 cut(s)	182, 748
EcoT38I	GRGCYC	1 cut(s)	601
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	1 cut(s)	806
FaiI	YATR	9 cut(s)	22, 386, 474, 476, 581, 620, 664, 666, 804
FatI	CATG	1 cut(s)	802
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	3 cut(s)	30, 129, 932
FokI	GGATG	3 cut(s)	245, 411, 653
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	30, 129, 932
FspBI	CTAG	2 cut(s)	167, 830
GlaI	GCGC	5 cut(s)	13, 15, 178, 180, 309
GluI	GCNGC	3 cut(s)	30, 129, 932
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	5 cut(s)	108, 141, 240, 471, 777
HapII	CCGG	6 cut(s)	75, 216, 273, 462, 563, 591
HgaI	GACGC	2 cut(s)	158, 257
HhaI	GCGC	5 cut(s)	14, 16, 179, 181, 310
Hin1I	GRCGYC	2 cut(s)	150, 249
Hin1II	CATG	1 cut(s)	806
Hin6I	GCGC	5 cut(s)	12, 14, 177, 179, 308
HinP1I	GCGC	5 cut(s)	12, 14, 177, 179, 308
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	277, 389, 583, 756
HpaII	CCGG	6 cut(s)	75, 216, 273, 462, 563, 591
HphI	GGTGA	4 cut(s)	113, 353, 418, 551
Hpy166II	GTNNAC	2 cut(s)	616, 811
Hpy188I	TCNGA	4 cut(s)	299, 522, 603, 840
Hpy188III	TCNNGA	4 cut(s)	167, 226, 462, 830
Hpy8I	GTNNAC	2 cut(s)	616, 811
Hpy99I	CGWCG	2 cut(s)	101, 152
HpyAV	CCTTC	5 cut(s)	52, 98, 173, 598, 902
HpyCH4III	ACNGT	3 cut(s)	101, 815, 861
HpyCH4IV	ACGT	2 cut(s)	84, 89
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 233, 643, 652
HpyF3I	CTNAG	3 cut(s)	600, 651, 710
HpySE526I	ACGT	2 cut(s)	84, 89
Hsp92I	GRCGYC	2 cut(s)	150, 249
Hsp92II	CATG	1 cut(s)	806
HspAI	GCGC	5 cut(s)	12, 14, 177, 179, 308
Kpn2I	TCCGGA	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	77, 421
Lsp1109I	GCAGC	1 cut(s)	943
LweI	GCATC	3 cut(s)	111, 433, 736
MaeI	CTAG	2 cut(s)	167, 830
MaeII	ACGT	2 cut(s)	84, 89
MaeIII	GTNAC	2 cut(s)	85, 154
MboII	GAAGA	7 cut(s)	17, 331, 365, 716, 722, 760, 790
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	3 cut(s)	287, 394, 841
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	471
MreI	CGCCGGCG	1 cut(s)	215
MroI	TCCGGA	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	2 cut(s)	431, 657
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	6 cut(s)	75, 216, 273, 462, 563, 591
MspR9I	CCNGG	4 cut(s)	184, 274, 563, 750
MvaI	CCWGG	2 cut(s)	184, 750
MvnI	CGCG	5 cut(s)	14, 179, 227, 310, 446
MwoI	GCNNNNNNNGC	4 cut(s)	158, 233, 643, 652
NaeI	GCCGGC	1 cut(s)	217
NciI	CCSGG	2 cut(s)	274, 563
NdeI	CATATG	1 cut(s)	664
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	806
NmuCI	GTSAC	1 cut(s)	154
NruI	TCGCGA	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	586
PalAI	GGCGCGCC	1 cut(s)	177
PauI	GCGCGC	2 cut(s)	12, 177
PceI	AGGCCT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 150, 333
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	277, 583, 756
PflFI	GACNNNGTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	31, 130, 933
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	182, 748
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	182, 748
PspPI	GGNCC	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	152
PteI	GCGCGC	2 cut(s)	12, 177
RruI	TCGCGA	1 cut(s)	227
RsaI	GTAC	5 cut(s)	92, 294, 698, 812, 851
RsaNI	GTAC	5 cut(s)	91, 293, 697, 811, 850
SaqAI	TTAA	2 cut(s)	431, 657
SatI	GCNGC	3 cut(s)	30, 129, 932
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	4 cut(s)	184, 274, 563, 750
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	111, 433, 736
SfcI	CTRYAG	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	586
SgrAI	CRCCGGYG	1 cut(s)	215
SgsI	GGCGCGCC	1 cut(s)	177
SnaBI	TACGTA	1 cut(s)	90
Sse9I	AATT	3 cut(s)	287, 394, 841
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	8 cut(s)	29, 116, 129, 213, 310, 404, 452, 783
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	167, 830
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	182, 272, 561, 748
TaaI	ACNGT	3 cut(s)	101, 815, 861
TaiI	ACGT	2 cut(s)	87, 92
TaqI	TCGA	5 cut(s)	96, 392, 586, 631, 936
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	287, 394, 841
TatI	WGTACW	2 cut(s)	696, 810
TauI	GCSGC	2 cut(s)	32, 131
TfiI	GAWTC	3 cut(s)	277, 583, 756
Tru1I	TTAA	2 cut(s)	431, 657
Tru9I	TTAA	2 cut(s)	431, 657
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	931
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	853
TspGWI	ACGGA	2 cut(s)	417, 705
TspRI	CASTG	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	841
XbaI	TCTAGA	2 cut(s)	166, 829
XspI	CTAG	2 cut(s)	167, 830
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.